Guide to the Human Genome
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Name: LOC652522 Sequence: fasta or formatted (1140aa) NCBI GI: 169218196
Description:

PREDICTED: similar to Werner syndrome ATP-dependent helicase, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         53           2
 C cysteine            2.5         28           2
 D aspartate           5.6         64           3
 E glutamate           8.6         98           4
 F phenylalanine       2.8         32           1
 G glycine             5.3         60           2
 H histidine           2.6         30           2
 I isoleucine          6.3         72           2
 K lysine              7.6         87           2
 L leucine             9.9        113           2
 M methionine          3.2         37           2
 N asparagine          4.5         51           2
 P proline             4.1         47           2
 Q glutamine           4.4         50           2
 R arginine            4.8         55           2
 S serine              9.0        103           3
 T threonine           5.2         59           2
 V valine              5.3         60           1
 W tryptophan          1.0         11           2
 Y tyrosine            2.6         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Werner syndrome ATP-dependent... 
WRN                   0.999   Werner syndrome protein 
RECQL                 0.099   RecQ protein-like 
RECQL                 0.099   RecQ protein-like 
BLM                   0.087   Bloom syndrome protein 
RECQL5                0.084   RecQ protein-like 5 isoform 1 
RECQL5                0.083   RecQ protein-like 5 isoform 3 
RECQL5                0.083   RecQ protein-like 5 isoform 2 
RECQL4                0.063   RecQ protein-like 4 
DDX46                 0.017   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
DDX3X                 0.015   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX17                 0.015   DEAD box polypeptide 17 isoform 3 
DDX17                 0.015   DEAD box polypeptide 17 isoform 1 
DDX3Y                 0.014   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.014   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
DDX42                 0.014   DEAD box polypeptide 42 protein 
DDX42                 0.014   DEAD box polypeptide 42 protein 
DDX50                 0.013   nucleolar protein GU2 
EIF4A3                0.013   eukaryotic translation initiation factor 4A, isoform ...
DDX5                  0.013   DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 
DDX43                 0.012   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
DDX52                 0.012   ATP-dependent RNA helicase ROK1 isoform b 
DDX52                 0.012   ATP-dependent RNA helicase ROK1 isoform a 
DDX6                  0.012   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
DDX59                 0.011   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
EIF4A1                0.011   eukaryotic translation initiation factor 4A isoform 1...
DDX23                 0.011   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DDX54                 0.011   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX54                 0.011   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...
DDX24                 0.011   DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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