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Search of human proteins with 222080060
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222080060 Smith-Magenis syndrome chromosome region,
candidate 7 isoform 3 [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222080060 Smith-Magenis syndrome chromosome region, candidate... 421 e-118
gi|222080058 Smith-Magenis syndrome chromosome region, candidate... 203 9e-53
gi|22538488 Smith-Magenis syndrome chromosome region, candidate ... 203 9e-53
gi|22129774 hypothetical protein LOC54471 [Homo sapiens] 79 4e-15
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 40 0.001
gi|24308115 interferon regulatory factor 2 binding protein 1 [Ho... 40 0.002
gi|148276998 zinc finger protein 628 [Homo sapiens] 40 0.002
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 39 0.002
gi|110832843 TBP-associated factor 4 [Homo sapiens] 39 0.002
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 39 0.004
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 39 0.004
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 39 0.004
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 38 0.005
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 38 0.005
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 38 0.005
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 38 0.005
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 38 0.007
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 37 0.009
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 37 0.009
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 37 0.009
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 37 0.009
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 37 0.009
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 37 0.009
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 37 0.009
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 37 0.009
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 37 0.009
gi|89257348 homeo box HB9 [Homo sapiens] 37 0.012
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 37 0.012
gi|169214023 PREDICTED: hypothetical protein [Homo sapiens] 37 0.015
gi|169214468 PREDICTED: hypothetical protein [Homo sapiens] 37 0.015
>gi|222080060 Smith-Magenis syndrome chromosome region, candidate 7
isoform 3 [Homo sapiens]
Length = 205
Score = 421 bits (1083), Expect = e-118
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE 60
MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE
Sbjct: 1 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE 60
Query: 61 DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSP 120
DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSP
Sbjct: 61 DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSP 120
Query: 121 GGFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAG 180
GGFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAG
Sbjct: 121 GGFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAG 180
Query: 181 PVEPGAGRGHCGEGPSLLGRAQDAA 205
PVEPGAGRGHCGEGPSLLGRAQDAA
Sbjct: 181 PVEPGAGRGHCGEGPSLLGRAQDAA 205
>gi|222080058 Smith-Magenis syndrome chromosome region, candidate 7
isoform 2 [Homo sapiens]
Length = 465
Score = 203 bits (516), Expect = 9e-53
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE 60
MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE
Sbjct: 12 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE 71
Query: 61 DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAP 103
DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAP
Sbjct: 72 DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAP 114
>gi|22538488 Smith-Magenis syndrome chromosome region, candidate 7
isoform 1 [Homo sapiens]
Length = 454
Score = 203 bits (516), Expect = 9e-53
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE 60
MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE
Sbjct: 1 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE 60
Query: 61 DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAP 103
DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAP
Sbjct: 61 DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAP 103
>gi|22129774 hypothetical protein LOC54471 [Homo sapiens]
Length = 463
Score = 78.6 bits (192), Expect = 4e-15
Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 6/105 (5%)
Query: 1 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRA----TS 56
MA +++GK+ D G+G+ +DF+L+NARLVLGVGGAA+LGIATLAVKR DRA TS
Sbjct: 1 MAGAGERKGKK-DDNGIGTAIDFVLSNARLVLGVGGAAMLGIATLAVKRMYDRAISAPTS 59
Query: 57 PRDEDDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSS 101
P + SW+E + + +P L R LS+ + L SS
Sbjct: 60 PTRLSHSGKRSWEEPNWM-GSPRLLNRDMKTGLSRSLQTLPTDSS 103
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.4 bits (93), Expect = 0.001
Identities = 37/100 (37%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 98 PSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGAA 157
P P A+G R P P P G G R GA G +E PG + GA
Sbjct: 982 PGKQGPSGASGERGPP--GPMGPPGLAGPPGESGREGAPG--AEGSPGRD----GSPGAK 1033
Query: 158 LRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCGE-GPS 196
R G GP +PGA GA GPV P G GE GP+
Sbjct: 1034 GDRGETGPAGPPGAPGAPGA-PGPVGPAGKSGDRGETGPA 1072
Score = 38.1 bits (87), Expect = 0.005
Identities = 35/92 (38%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 111 AGPCDHPSSPGGFGQTA--------GWRHRPGAAGLLSEQVPGTALWGIRAWGAALRRAA 162
AGP P SPG G G R RPGA G P A A GAA
Sbjct: 283 AGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPG------PAGARGNDGATGAAGPPGP 336
Query: 163 GGGCGPCASPGATGA--GAGPVEPGAGRGHCG 192
G GP PGA GA AGP P G G
Sbjct: 337 TGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQG 368
Score = 35.4 bits (80), Expect = 0.034
Identities = 39/135 (28%), Positives = 45/135 (33%), Gaps = 21/135 (15%)
Query: 82 PRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDH----PSSPGGFGQTAGWRHRPGAAG 137
P PP P S P G R P D P P GF G +PGA G
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKG 827
Query: 138 LLSEQ-------VPGTA--------LWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPV 182
+ PG A + + A GA R + G G PGA G GP
Sbjct: 828 EPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGR-VGPP 886
Query: 183 EPGAGRGHCG-EGPS 196
P G G GP+
Sbjct: 887 GPSGNAGPPGPPGPA 901
Score = 33.9 bits (76), Expect = 0.099
Identities = 43/132 (32%), Positives = 50/132 (37%), Gaps = 24/132 (18%)
Query: 78 PHLQPRPPPAALSQ-----PVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQT--AGWR 130
P P PP A Q P P P +S P GP P PG G AG
Sbjct: 186 PRGLPGPPGAPGPQGFQGPPGEPGEPGASGP-------MGPRGPPGPPGKNGDDGEAGKP 238
Query: 131 HRPGAAGLLSEQ----VPGTA----LWGIRAW-GAALRRAAGGGCGPCASPGATGAGAGP 181
RPG G Q +PGTA + G R + G + G GP PG+ G P
Sbjct: 239 GRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAP 298
Query: 182 VEPGAGRGHCGE 193
+ G RG GE
Sbjct: 299 GQMGP-RGLPGE 309
Score = 33.9 bits (76), Expect = 0.099
Identities = 34/123 (27%), Positives = 42/123 (34%), Gaps = 3/123 (2%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDH--PSSPGGFGQTAGWRHRP 133
A + PR P +P P P+ + + A AGP P+ P GF G +
Sbjct: 297 APGQMGPRGLPGERGRPGAP-GPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEA 355
Query: 134 GAAGLLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCGE 193
G G + P G A G G PGA GA P GA
Sbjct: 356 GPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGAR 415
Query: 194 GPS 196
GPS
Sbjct: 416 GPS 418
Score = 32.3 bits (72), Expect = 0.29
Identities = 35/114 (30%), Positives = 36/114 (31%), Gaps = 8/114 (7%)
Query: 85 PPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQVP 144
PP A QP P + AG GP PG G PGA G P
Sbjct: 816 PPGADGQPGAKGEPGDAGAKGDAG-PPGPAGPAGPPGPIGNVGA----PGAKGARGSAGP 870
Query: 145 GTALWGIRAWGAALRRAAGGGCGPCASPGATG--AGAGPVEPGAGRGHCGE-GP 195
A A G G GP PG G G GP G GE GP
Sbjct: 871 PGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGP 924
Score = 32.0 bits (71), Expect = 0.38
Identities = 37/118 (31%), Positives = 40/118 (33%), Gaps = 16/118 (13%)
Query: 82 PRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTA--GWRHRPGAAGLL 139
P PP P AP S A G GP PG G+ G R PG GL
Sbjct: 423 PGGPPGPKGNSGEPGAPGSKGDTGAKG-EPGPVGVQGPPGPAGEEGKRGARGEPGPTGLP 481
Query: 140 ----------SEQVPGTALWGIRA-WGAALRRAAGGGCGPCASPGATGAGAGPVEPGA 186
S PG G+ G A R + G GP SPG G PGA
Sbjct: 482 GPPGERGGPGSRGFPGAD--GVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 537
Score = 32.0 bits (71), Expect = 0.38
Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 112 GPCDHPSSPGGFGQT-----AGWRHRPGAAGLLSEQ----VPGTALWGIRAWGAALRRAA 162
GP P SPG G + AG R PG+AG + +PG G R
Sbjct: 1118 GPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPI-------GPPGPRGR 1170
Query: 163 GGGCGPCASPGATGAGAGPVEPGAG 187
G GP PG G P P AG
Sbjct: 1171 TGDAGPVGPPGPPGPPGPPGPPSAG 1195
Score = 29.3 bits (64), Expect = 2.4
Identities = 32/115 (27%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 84 PPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQ- 142
P PA + P P+ + + A AGP PG G+ PG +G
Sbjct: 841 PGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGP----PGPSGNAGPPG 896
Query: 143 VPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCG-EGPS 196
PG A G + G GP PG G GP P +G G +GP+
Sbjct: 897 PPGPA-------GKEGGKGPRGETGPAGRPGEVGP-PGPPGPAGEKGSPGADGPA 943
Score = 28.5 bits (62), Expect = 4.2
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 18/84 (21%)
Query: 103 PGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGAALRRAA 162
PG A AGP +P + G +PGA G + PG A A G R
Sbjct: 376 PGPAGA--AGPAGNPGADG----------QPGAKG--ANGAPGIA----GAPGFPGARGP 417
Query: 163 GGGCGPCASPGATGAGAGPVEPGA 186
G GP PG G P PG+
Sbjct: 418 SGPQGPGGPPGPKGNSGEPGAPGS 441
Score = 28.1 bits (61), Expect = 5.5
Identities = 40/137 (29%), Positives = 44/137 (32%), Gaps = 34/137 (24%)
Query: 75 KATPHLQPRPPPAAL-------SQPVLPLAPSSSAPGEAAGL--RAGPCDHPSSPG---- 121
K +P RP A L P P + P AG R GP P + G
Sbjct: 520 KGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGV 579
Query: 122 -GFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAG 180
GF G PG AG VPG G GP G GA G
Sbjct: 580 MGFPGPKGAAGEPGKAG--ERGVPGPP----------------GAVGPAGKDGEAGA-QG 620
Query: 181 PVEPGAGRGHCGE-GPS 196
P P G GE GP+
Sbjct: 621 PPGPAGPAGERGEQGPA 637
>gi|24308115 interferon regulatory factor 2 binding protein 1 [Homo
sapiens]
Length = 584
Score = 39.7 bits (91), Expect = 0.002
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 21/131 (16%)
Query: 67 SWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQT 126
S++E + +A P P P PAAL P P APS + L P +SP G+
Sbjct: 340 SFREPAPAEALPQQYPEPAPAALCGPP-PRAPSRN-------LAPTPRRRKASPEPEGEA 391
Query: 127 AG--------WRHRPGAAGLLSEQVPG-----TALWGIRAWGAALRRAAGGGCGPCASPG 173
AG RH G S + PG AL + + GGG GP + G
Sbjct: 392 AGKMTTEEQQQRHWVAPGGPYSAETPGVPSPIAALKNVAEALGHSPKDPGGGGGPVRAGG 451
Query: 174 ATGAGAGPVEP 184
A+ A + +P
Sbjct: 452 ASPAASSTAQP 462
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 39.7 bits (91), Expect = 0.002
Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 80 LQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLL 139
+QP PP + P L L PSSSA R G P + G GQ AG PG GL
Sbjct: 724 VQPPTPPPPPAPPKLILLPSSSAGAGGGRARQG----PRAVGKAGQGAGVVWLPGPGGL- 778
Query: 140 SEQVPGTALWGIRAWGAA---LRRAAGGGCGP 168
V G A G G + L+ GG GP
Sbjct: 779 --GVQGAASAGASGTGQSLIVLQNVGGGEAGP 808
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 39.3 bits (90), Expect = 0.002
Identities = 33/107 (30%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 78 PHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAG 137
P P PPP P P P S P A G GP P P G G PG A
Sbjct: 170 PPPPPGPPPPP-GPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAPGLAA 228
Query: 138 LLSEQVPGTALWGIRAWGAALRR------AAGGGCGPCASPGATGAG 178
++ GA LR+ A+GG P A G +G G
Sbjct: 229 AIA--------------GAKLRKVSKQEEASGGPTAPKAESGRSGGG 261
Score = 27.7 bits (60), Expect = 7.1
Identities = 38/141 (26%), Positives = 49/141 (34%), Gaps = 33/141 (23%)
Query: 84 PPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDH----------PSSP--GGFGQTAGWRH 131
PPP AL +P PS + + GP +H P +P GG G
Sbjct: 119 PPPPALPTWSVPNGPSPEEVEQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPP 178
Query: 132 RPG---AAGLLSEQVPGTALWGIRAWGAALRRAAGGGCGPC----ASPGATGAGAGPVEP 184
PG GL VP A AGGG P A+ G G GAG P
Sbjct: 179 PPGPPPPPGLPPSGVPAAA------------HGAGGGPPPAPPLPAAQGPGGGGAG--AP 224
Query: 185 GAGRGHCGEGPSLLGRAQDAA 205
G G + + ++A+
Sbjct: 225 GLAAAIAGAKLRKVSKQEEAS 245
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 39.3 bits (90), Expect = 0.002
Identities = 40/127 (31%), Positives = 47/127 (37%), Gaps = 23/127 (18%)
Query: 75 KATPHLQPRPPPAALSQPV-------------LPLAPSSSAPGEAAGLRAGPCDHPSSPG 121
+ P P PPPA ++P PL P+ AP AA LR P G
Sbjct: 80 EGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAP-PAAKLR------PPPEG 132
Query: 122 GFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGP 181
G A P AA + + P A A AAL AG G GP PG P
Sbjct: 133 SAGSCAPV---PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKP 189
Query: 182 VEPGAGR 188
PGA +
Sbjct: 190 AGPGAAQ 196
Score = 35.8 bits (81), Expect = 0.026
Identities = 30/102 (29%), Positives = 33/102 (32%), Gaps = 1/102 (0%)
Query: 84 PPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQV 143
PP + P P APS A A A P P +P + G P A
Sbjct: 241 PPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPP 300
Query: 144 PGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPG 185
G A AAGG G PG A A P PG
Sbjct: 301 AAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPA-PG 341
Score = 34.7 bits (78), Expect = 0.058
Identities = 41/133 (30%), Positives = 46/133 (34%), Gaps = 14/133 (10%)
Query: 79 HLQPRPPPA------ALSQPVLPLAPSSSA-PGEAAGLRAGPCDHPSSP--GGFGQTAGW 129
HL PR P AL V+ +P+ +A G AA P P P G G
Sbjct: 42 HLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGG 101
Query: 130 RHRPGAAGLLSEQVPGTALWGIRAWGAALRRAAGGGCGPCAS-PGATGAGAGPVEPGAGR 188
RPG VP G A LR G G CA P A AGP AG
Sbjct: 102 PQRPGPPSPRRPLVPA----GPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGP 157
Query: 189 GHCGEGPSLLGRA 201
+L RA
Sbjct: 158 AKPAGPAALAARA 170
Score = 27.7 bits (60), Expect = 7.1
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 15/80 (18%)
Query: 76 ATPHLQPRPPPAALSQPVLPLA----------PSSSAPGEAAG-----LRAGPCDHPSSP 120
A P + RPPP + P+ P+ + P + AG RAGP P
Sbjct: 120 APPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPG 179
Query: 121 GGFGQTAGWRHRPGAAGLLS 140
G G G PGAA L+
Sbjct: 180 PGPGPGPGKPAGPGAAQTLN 199
Score = 27.3 bits (59), Expect = 9.3
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 158 LRRAAGGGCGPCASPG--ATGAGAGPVEPGAGRGHCGEGPSLLGRAQ 202
+R AA G G G A AGAGP P G P GRA+
Sbjct: 50 VRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRAR 96
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 38.5 bits (88), Expect = 0.004
Identities = 39/126 (30%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGA 135
A P P P PA P P APG AG R P + ++ T G R R
Sbjct: 241 AQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLR-RGDC 299
Query: 136 AGLLSEQVPGTALWGIRAWGAALRRAAGGG---------CGPCASPGA---TGAGAGPVE 183
S Q P T+ G R RR GGG GP + PG GA +
Sbjct: 300 DRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLR 359
Query: 184 PGAGRG 189
G+G G
Sbjct: 360 AGSGEG 365
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 38.5 bits (88), Expect = 0.004
Identities = 39/126 (30%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGA 135
A P P P PA P P APG AG R P + ++ T G R R
Sbjct: 241 AQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLR-RGDC 299
Query: 136 AGLLSEQVPGTALWGIRAWGAALRRAAGGG---------CGPCASPGA---TGAGAGPVE 183
S Q P T+ G R RR GGG GP + PG GA +
Sbjct: 300 DRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLR 359
Query: 184 PGAGRG 189
G+G G
Sbjct: 360 AGSGEG 365
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 38.5 bits (88), Expect = 0.004
Identities = 39/126 (30%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGA 135
A P P P PA P P APG AG R P + ++ T G R R
Sbjct: 241 AQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLR-RGDC 299
Query: 136 AGLLSEQVPGTALWGIRAWGAALRRAAGGG---------CGPCASPGA---TGAGAGPVE 183
S Q P T+ G R RR GGG GP + PG GA +
Sbjct: 300 DRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLR 359
Query: 184 PGAGRG 189
G+G G
Sbjct: 360 AGSGEG 365
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 38.1 bits (87), Expect = 0.005
Identities = 32/96 (33%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 104 GEAAGLRA--------GPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWG 155
G+ AG RA G P G + R RPG A S G A WG G
Sbjct: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAP-SPPARGAAAWGRSGGG 67
Query: 156 AALRRAAGGGCGPC---ASPGATGAGAGPVEPGAGR 188
A + GG P A PG G G+G PG R
Sbjct: 68 PAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRR 103
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 38.1 bits (87), Expect = 0.005
Identities = 52/153 (33%), Positives = 61/153 (39%), Gaps = 36/153 (23%)
Query: 72 SLLKATPHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRH 131
+L +A+ QPRP P PV PGE GLR G P PG G+T
Sbjct: 1232 ALCQASFTTQPRPEPC----PVYCPKGQKGEPGEM-GLR-GQVGPPGDPGLPGRTGA--- 1282
Query: 132 RPGAAGLLSEQVPGTALW-GIRAW-GAALRRAAGGGCGPCASPGATGAGAGP-------- 181
PG G PG+A G R + GA R + G G +PGA G P
Sbjct: 1283 -PGPQG-----PPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGD 1336
Query: 182 ----------VEPGA-GRGHCGEGPSLLGRAQD 203
EPGA G+ GEGP L GR D
Sbjct: 1337 PGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGD 1369
Score = 32.3 bits (72), Expect = 0.29
Identities = 33/110 (30%), Positives = 38/110 (34%), Gaps = 18/110 (16%)
Query: 92 PVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTA--GWRHRPGAAGLLSEQVPGTALW 149
P P +P P G GP PG G+ G R PG AG S +PG A
Sbjct: 1458 PGQPGSPGEQGPRGPPGA-IGPKGDRGFPGPLGEAGEKGERGPPGPAG--SRGLPGVA-- 1512
Query: 150 GIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCGEGPSLLG 199
G GP PG TG EPG GP++ G
Sbjct: 1513 -----------GRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAG 1551
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 38.1 bits (87), Expect = 0.005
Identities = 37/111 (33%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Query: 82 PRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSE 141
P PP +P P AP A GL GP P S G GQ G PG+ G
Sbjct: 300 PPGPPGPAGEPGKPGAPGKPGTPGADGL-TGPDGSPGSIGSKGQK-GEPGVPGSRGFPGR 357
Query: 142 QVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCG 192
+PG G A G GP PG G GP P RG G
Sbjct: 358 GIPGPP----GPPGTAGLPGELGRVGPVGDPGRRGP-PGPPGPPGPRGTIG 403
Score = 32.7 bits (73), Expect = 0.22
Identities = 36/114 (31%), Positives = 40/114 (35%), Gaps = 25/114 (21%)
Query: 83 RPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQ 142
R PP P P P G R GP P PG G+ +PGA G
Sbjct: 268 RGPPGEQGPPGPPGPPGVPGIDGIDGDR-GPKGPPGPPGPAGEPG----KPGAPGK---- 318
Query: 143 VPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPG--AGRGHCGEG 194
PGT A G GP SPG+ G+ EPG RG G G
Sbjct: 319 -PGTP-------------GADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRG 358
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 38.1 bits (87), Expect = 0.005
Identities = 37/111 (33%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Query: 82 PRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSE 141
P PP +P P AP A GL GP P S G GQ G PG+ G
Sbjct: 57 PPGPPGPAGEPGKPGAPGKPGTPGADGL-TGPDGSPGSIGSKGQK-GEPGVPGSRGFPGR 114
Query: 142 QVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCG 192
+PG G A G GP PG G GP P RG G
Sbjct: 115 GIPGPP----GPPGTAGLPGELGRVGPVGDPGRRGP-PGPPGPPGPRGTIG 160
Score = 32.7 bits (73), Expect = 0.22
Identities = 36/114 (31%), Positives = 40/114 (35%), Gaps = 25/114 (21%)
Query: 83 RPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQ 142
R PP P P P G R GP P PG G+ +PGA G
Sbjct: 25 RGPPGEQGPPGPPGPPGVPGIDGIDGDR-GPKGPPGPPGPAGEPG----KPGAPGK---- 75
Query: 143 VPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPG--AGRGHCGEG 194
PGT A G GP SPG+ G+ EPG RG G G
Sbjct: 76 -PGTP-------------GADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRG 115
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 37.7 bits (86), Expect = 0.007
Identities = 43/133 (32%), Positives = 49/133 (36%), Gaps = 31/133 (23%)
Query: 85 PPAALSQPVLPLAPSSSAPGEAAGLRAGP-CDHPSSPGG---------FGQTAGWRHRPG 134
PPAA PV+P +P +P E G+ AGP C P GG G PG
Sbjct: 478 PPAASKAPVVP-SPVLQSPSEGLGMGAGPACPLPPLAGGEAFPFPSPEQGLALSGAGFPG 536
Query: 135 AAGLLS-----EQVPGTALWGIRAWGAALRRAAGGGCGP----CASPGATGAGAGPVEPG 185
G L Q P + L +G GGG P PG G P EP
Sbjct: 537 MLGALPLPLSLGQPPPSPLLNHSLFGVL---TGGGGQPPPEPLLPPPGGPGPPLAPGEP- 592
Query: 186 AGRGHCGEGPSLL 198
EGPSLL
Sbjct: 593 -------EGPSLL 598
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 37.4 bits (85), Expect = 0.009
Identities = 38/115 (33%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 84 PPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLS-EQ 142
P + SQ + SS+ G+ + R DHPSS G +GQ +G PG +S
Sbjct: 186 PQTGSYSQAPSQYSQQSSSYGQQSSFRQ---DHPSSMGVYGQESGGFSGPGENRSMSGPD 242
Query: 143 VPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCGEGPSL 197
G G G + R GGG G S G G G +PG G EGP L
Sbjct: 243 NRGRGRGGFDRGGMS-RGGRGGGRGGMGSAGERG---GFNKPG---GPMDEGPDL 290
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 37.4 bits (85), Expect = 0.009
Identities = 38/115 (33%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 84 PPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLS-EQ 142
P + SQ + SS+ G+ + R DHPSS G +GQ +G PG +S
Sbjct: 242 PQTGSYSQAPSQYSQQSSSYGQQSSFRQ---DHPSSMGVYGQESGGFSGPGENRSMSGPD 298
Query: 143 VPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCGEGPSL 197
G G G + R GGG G S G G G +PG G EGP L
Sbjct: 299 NRGRGRGGFDRGGMS-RGGRGGGRGGMGSAGERG---GFNKPG---GPMDEGPDL 346
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 37.4 bits (85), Expect = 0.009
Identities = 38/107 (35%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 92 PVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTA--GWRHRPGAAGLLSEQ-VPGTAL 148
PV P P S+ P G GP + +PG G G R PG AGL Q PGT
Sbjct: 1033 PVGP--PGSNGPVGEPGPE-GPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTP- 1088
Query: 149 WGIRAWGAALRRAAGGGCGPCASPGATGAGA--GPVEPGAGRGHCGE 193
+ A G A +R G GP PG G GP P +G G+
Sbjct: 1089 GPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGD 1135
Score = 32.3 bits (72), Expect = 0.29
Identities = 34/107 (31%), Positives = 35/107 (32%), Gaps = 16/107 (14%)
Query: 92 PVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQVPGTALWGI 151
PV P P + GP P PG G G R G G E
Sbjct: 217 PVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPI-GSRGPEGPPGKPGED--------- 266
Query: 152 RAWGAALRRAAGGGCGPCASPGATGAGAGPVEPG--AGRGHCG-EGP 195
G R G G SPGA G P PG RGH G EGP
Sbjct: 267 ---GEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGP 310
Score = 30.8 bits (68), Expect = 0.84
Identities = 36/110 (32%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 84 PPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLL-SEQ 142
P P + P+ P PGE + GP P + G G G R PG G S+
Sbjct: 485 PGPHGIQGPIGP-------PGEEG--KRGPRGDPGTVGPPGPV-GERGAPGNRGFPGSDG 534
Query: 143 VPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCG 192
+PG GA R G GP S G G P PGA RG G
Sbjct: 535 LPGPK-------GAQGERGPVGSSGPKGSQGDPGRPGEPGLPGA-RGLTG 576
Score = 28.5 bits (62), Expect = 4.2
Identities = 27/100 (27%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 98 PSSSAPGEAAGLRAGPCDHPSSPGGFGQTA--GWRHRPGAAGLLSEQVPGTALWGIRAWG 155
P P G+ G P +PG G+ G R G G E P + G
Sbjct: 362 PGKPGPMGPLGI-PGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPG 420
Query: 156 AALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCGEGP 195
A G GP SPG +G PG+ GP
Sbjct: 421 AIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGP 460
Score = 28.1 bits (61), Expect = 5.5
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 112 GPCDHPSSPGGFGQTA--GWRHRPGAAGLLSEQVPGTALWGIR---AWGAALRRAAGGGC 166
GP P G G T G + PG G+ P GI A G A A G
Sbjct: 741 GPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLP 800
Query: 167 GPCASPGATGAGAGPVEPG 185
GP PG G EPG
Sbjct: 801 GPLGPPGPAGPTGEKGEPG 819
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 37.4 bits (85), Expect = 0.009
Identities = 43/136 (31%), Positives = 48/136 (35%), Gaps = 30/136 (22%)
Query: 74 LKATPHLQPRP----------PPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGF 123
L P LQ RP PP A Q AP ++ A G P PS P G
Sbjct: 360 LPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAP--GPSGPPGS 417
Query: 124 GQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVE 183
G R PG G E+ GAA + G GP PGA G P
Sbjct: 418 VGAPGLRGTPGKDGERGEK------------GAAGEEGSPGPVGPRGDPGAPGLPGPP-- 463
Query: 184 PGAGRGHCGEGPSLLG 199
G+G GE P L G
Sbjct: 464 ---GKGKDGE-PGLRG 475
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 37.4 bits (85), Expect = 0.009
Identities = 34/100 (34%), Positives = 38/100 (38%), Gaps = 15/100 (15%)
Query: 106 AAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGAALRRAAGGG 165
AAG RAGP P G G+ A R P PGTA R A + RA GG
Sbjct: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSP---------APGTA----RGSPAGVERA--GG 137
Query: 166 CGPCASPGATGAGAGPVEPGAGRGHCGEGPSLLGRAQDAA 205
+S G A + P G G G L R AA
Sbjct: 138 ATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAA 177
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 37.4 bits (85), Expect = 0.009
Identities = 35/113 (30%), Positives = 45/113 (39%), Gaps = 16/113 (14%)
Query: 98 PSSSAPGEAAGLRA-GPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGA 156
P + PG G A GP P P G G A RPG + + +PG L + +G
Sbjct: 719 PPFNFPGNFGGSNAFGP---PIPPPGLGGGAFGDARPGMPSVGNSGLPGLGL-DVPGFGG 774
Query: 157 ALRRAAGG----------GCGPCASPGATGAGAGPVEPGAGRGHCGEGPSLLG 199
+G G GP + G G G+GP G+ GH G GP G
Sbjct: 775 GPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLG-GPPAFG 826
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 37.4 bits (85), Expect = 0.009
Identities = 35/113 (30%), Positives = 45/113 (39%), Gaps = 16/113 (14%)
Query: 98 PSSSAPGEAAGLRA-GPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGA 156
P + PG G A GP P P G G A RPG + + +PG L + +G
Sbjct: 719 PPFNFPGNFGGSNAFGP---PIPPPGLGGGAFGDARPGMPSVGNSGLPGLGL-DVPGFGG 774
Query: 157 ALRRAAGG----------GCGPCASPGATGAGAGPVEPGAGRGHCGEGPSLLG 199
+G G GP + G G G+GP G+ GH G GP G
Sbjct: 775 GPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLG-GPPAFG 826
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 37.4 bits (85), Expect = 0.009
Identities = 37/114 (32%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGA 135
A P QP PPP P P AP +AP L A P + P G + G P
Sbjct: 20 AEPPPQPPPPPPPTPPPGEP-APVPAAPRYLPPLPASP-ETPERAAGPSEPLG-EVAPRC 76
Query: 136 AGLLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRG 189
G ++++P L ++ G + A G GP P A A GP E AG G
Sbjct: 77 RG--ADELPPPPL-PLQPAGQEVAAAGDSGEGPRRLPEAAAAKGGPGESEAGAG 127
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 37.4 bits (85), Expect = 0.009
Identities = 43/136 (31%), Positives = 48/136 (35%), Gaps = 30/136 (22%)
Query: 74 LKATPHLQPRP----------PPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGF 123
L P LQ RP PP A Q AP ++ A G P PS P G
Sbjct: 878 LPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAP--GPSGPPGS 935
Query: 124 GQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVE 183
G R PG G E+ GAA + G GP PGA G P
Sbjct: 936 VGAPGLRGTPGKDGERGEK------------GAAGEEGSPGPVGPRGDPGAPGLPGPP-- 981
Query: 184 PGAGRGHCGEGPSLLG 199
G+G GE P L G
Sbjct: 982 ---GKGKDGE-PGLRG 993
Score = 28.5 bits (62), Expect = 4.2
Identities = 38/131 (29%), Positives = 43/131 (32%), Gaps = 26/131 (19%)
Query: 81 QPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLS 140
Q RP P+ ++ P GE + GP P PG Q G + GA G
Sbjct: 619 QGRPGPSGVAGP----------QGEKGDV--GPAGPPGVPGSVVQQEGLKGEQGAPGPRG 666
Query: 141 EQ-VPGTALWGIRA----------WGAALRRAAGGGCGPCASPGATGAGAGPVEPGA-GR 188
Q PG G R G R G GP PG G P PG G
Sbjct: 667 HQGAPGPP--GARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGVPGP 724
Query: 189 GHCGEGPSLLG 199
G P L G
Sbjct: 725 PGPGGSPGLPG 735
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 37.0 bits (84), Expect = 0.012
Identities = 36/125 (28%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 85 PPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQVP 144
PP A S PLA +S A+G G GG G + G G+ S + P
Sbjct: 17 PPRAASAQSAPLALVTSLAAAASGTGGGG-------GGGGASGG---TSGSCSPASSEPP 66
Query: 145 GTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRG----HCGEGPSLLGR 200
+RA + R C PG GAG G G G G H G +
Sbjct: 67 AAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAAAA 126
Query: 201 AQDAA 205
A AA
Sbjct: 127 AAAAA 131
Score = 28.1 bits (61), Expect = 5.5
Identities = 34/107 (31%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 88 ALSQPVLPLAPSSSAPGEAAG---LRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQV- 143
A S+P P AP+ E+ L A C PG G G G G
Sbjct: 61 ASSEP--PAAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGGPHHHAH 118
Query: 144 PGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGH 190
PG A A AA AA GG PG GAG A GH
Sbjct: 119 PGAAA----AAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGH 161
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 37.0 bits (84), Expect = 0.012
Identities = 51/179 (28%), Positives = 68/179 (37%), Gaps = 21/179 (11%)
Query: 26 ANARLVLGVGGAAVLG-IATLAVKRFIDRATSPRDEDDTKADSWKELSLLKATPHLQP-R 83
A A L+LGV AA+ G +A L +R + R P D A+ E L + L R
Sbjct: 48 AAACLLLGVQAAALQGRVAALEEERELLRRAGPPGALDAWAEPHLERLLREKLDGLAKIR 107
Query: 84 PPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPG-----GFGQTAGWRHRPGAAGL 138
A S+ V P P PG + G P PG G+ G +PG G
Sbjct: 108 TAREAPSECVCPPGP----PGRRG--KPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGP 161
Query: 139 LSEQ-VPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCGEGPS 196
E+ PG +G + G GP PG GA P + G +GP+
Sbjct: 162 KGEKGAPGD-------FGPRGDQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPA 213
>gi|169214023 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 36.6 bits (83), Expect = 0.015
Identities = 39/121 (32%), Positives = 40/121 (33%), Gaps = 25/121 (20%)
Query: 78 PHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAG 137
P L+PRP P A P P SS P P SP G HRP
Sbjct: 51 PALRPRPQPKAPPSSAAPPTPHSSIP-----------PRPPSPWGPRVWGAPTHRP---- 95
Query: 138 LLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCGEGPSL 197
AL G A A AAG GC P G A A G G PSL
Sbjct: 96 ---------ALKGTEAQLLAPGPAAGSGCWP-ELAGTESASAEREREGGGPRSIRPRPSL 145
Query: 198 L 198
L
Sbjct: 146 L 146
>gi|169214468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 36.6 bits (83), Expect = 0.015
Identities = 39/121 (32%), Positives = 40/121 (33%), Gaps = 25/121 (20%)
Query: 78 PHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAG 137
P L+PRP P A P P SS P P SP G HRP
Sbjct: 51 PALRPRPQPKAPPSSAAPPTPHSSIP-----------PRPPSPWGPRVWGAPTHRP---- 95
Query: 138 LLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCGEGPSL 197
AL G A A AAG GC P G A A G G PSL
Sbjct: 96 ---------ALKGTEAQLLAPGPAAGSGCWP-ELAGTESASAEREREGGGPRSIRPRPSL 145
Query: 198 L 198
L
Sbjct: 146 L 146
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,566,208
Number of Sequences: 37866
Number of extensions: 654539
Number of successful extensions: 6265
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 615
Number of HSP's that attempted gapping in prelim test: 4779
Number of HSP's gapped (non-prelim): 1831
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.