Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 221218988
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221218988 protein tyrosine phosphatase, mitochondrial 1
isoform 2 [Homo sapiens]
(151 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221218988 protein tyrosine phosphatase, mitochondrial 1 isofo... 315 9e-87
gi|148224884 protein tyrosine phosphatase, mitochondrial 1 isofo... 120 4e-28
gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo ... 31 0.35
gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo ... 31 0.35
gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo ... 31 0.35
gi|33286436 gametogenetin [Homo sapiens] 31 0.35
gi|153792351 ADAM metallopeptidase with thrombospondin type 1 mo... 30 0.78
gi|28557723 hypothetical protein LOC283416 [Homo sapiens] 30 0.78
gi|157412249 RUN and SH3 domain containing 1 isoform c [Homo sap... 30 1.0
gi|157412245 RUN and SH3 domain containing 1 isoform a [Homo sap... 30 1.0
gi|42476123 RUN and SH3 domain containing 1 isoform d [Homo sapi... 30 1.0
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|46409434 hypothetical protein LOC388759 [Homo sapiens] 30 1.0
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 30 1.0
gi|150418009 transforming, acidic coiled-coil containing protein... 30 1.0
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 30 1.0
gi|38373682 pleckstrin homology domain containing family G membe... 30 1.0
gi|111154084 pleckstrin homology domain containing family G memb... 30 1.0
gi|111154088 pleckstrin homology domain containing family G memb... 30 1.0
gi|111154080 pleckstrin homology domain containing family G memb... 30 1.0
gi|111154078 pleckstrin homology domain containing family G memb... 30 1.0
gi|17149834 sortilin 1 preproprotein [Homo sapiens] 29 1.3
gi|84993742 tripartite motif-containing 71 [Homo sapiens] 29 1.3
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 29 1.7
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 29 1.7
gi|239755172 PREDICTED: hypothetical protein [Homo sapiens] 29 1.7
gi|239749673 PREDICTED: hypothetical protein XP_002347141 [Homo ... 29 1.7
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 29 1.7
gi|239743940 PREDICTED: hypothetical protein XP_002342994 [Homo ... 29 1.7
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ... 29 1.7
>gi|221218988 protein tyrosine phosphatase, mitochondrial 1 isoform
2 [Homo sapiens]
Length = 151
Score = 315 bits (807), Expect = 9e-87
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MAATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQVS 60
MAATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQVS
Sbjct: 1 MAATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQVS 60
Query: 61 RAGEPGPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGRERARGDHHERGVRDEVPVQLF 120
RAGEPGPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGRERARGDHHERGVRDEVPVQLF
Sbjct: 61 RAGEPGPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGRERARGDHHERGVRDEVPVQLF 120
Query: 121 TGAQMESRGGCKSHRQDPVIHPHQAWPAGCS 151
TGAQMESRGGCKSHRQDPVIHPHQAWPAGCS
Sbjct: 121 TGAQMESRGGCKSHRQDPVIHPHQAWPAGCS 151
>gi|148224884 protein tyrosine phosphatase, mitochondrial 1
isoform 1 [Homo sapiens]
Length = 201
Score = 120 bits (301), Expect = 4e-28
Identities = 58/59 (98%), Positives = 59/59 (100%)
Query: 1 MAATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQV 59
MAATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQ+
Sbjct: 1 MAATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQL 59
>gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo
sapiens]
Length = 221
Score = 31.2 bits (69), Expect = 0.35
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 51 PLRSLTRQVSRAGEP----GPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGRE 100
P R+L R R G GP P PR S P P G +++ A AAG G E
Sbjct: 96 PARTLRRGEGRGGPAQGARGPTPTPRGSAPPRPPGPHLRVVAAHLAWAAGGGAE 149
>gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo
sapiens]
Length = 221
Score = 31.2 bits (69), Expect = 0.35
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 51 PLRSLTRQVSRAGEP----GPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGRE 100
P R+L R R G GP P PR S P P G +++ A AAG G E
Sbjct: 96 PARTLRRGEGRGGPAQGARGPTPTPRGSAPPRPPGPHLRVVAAHLAWAAGGGAE 149
>gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo
sapiens]
Length = 221
Score = 31.2 bits (69), Expect = 0.35
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 51 PLRSLTRQVSRAGEP----GPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGRE 100
P R+L R R G GP P PR S P P G +++ A AAG G E
Sbjct: 96 PARTLRRGEGRGGPAQGARGPTPTPRGSAPPRPPGPHLRVVAAHLAWAAGGGAE 149
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 31.2 bits (69), Expect = 0.35
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 30 PGRAHRDWYHRIDPTVLLGALPLRSLTRQVSRAGEPGPLPRPRRSVPVGPLGSP-PSLLS 88
PG H++ + PT A P +A P P P P + P P+ +P P+
Sbjct: 467 PGLGHKE--SALAPT----AAPALPPALAADQAPAPSPAPAPTVAEPSPPVSAPAPAAAP 520
Query: 89 HLFASAAGTGRERARGDHHERGVRDEVPVQLFTGAQMESRGG 130
+ G ARG + G+ + P + T +S GG
Sbjct: 521 IKTRTRRNKGSRAARGATRKDGLHGDGPRERATATVPDSSGG 562
>gi|153792351 ADAM metallopeptidase with thrombospondin type 1
motif, 8 preproprotein [Homo sapiens]
Length = 889
Score = 30.0 bits (66), Expect = 0.78
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 63 GEPGPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGRERARGDHHE 108
G G L +P R GP G+ P + G G+ + RGDH E
Sbjct: 139 GAGGSLAQPHRLQRWGPAGARPLPRGPEWEVETGEGQRQERGDHQE 184
>gi|28557723 hypothetical protein LOC283416 [Homo sapiens]
Length = 131
Score = 30.0 bits (66), Expect = 0.78
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 61 RAGEPGPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGRERARGDHHERGVRDEVP 116
R PGP PR GPL +P H +AAG+ +++ R H R VP
Sbjct: 56 RVRYPGPHPRRAVEPAAGPLSAPIIAGGHPAEAAAGSAKQQPR--HSREVPRPPVP 109
>gi|157412249 RUN and SH3 domain containing 1 isoform c [Homo
sapiens]
Length = 492
Score = 29.6 bits (65), Expect = 1.0
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 8 EAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQVSRAGEPG- 66
+AGL +L+ PT ++L RG P + +LL PL LT + E
Sbjct: 209 DAGLLSLLYLPTGFFSLARGGCPS---------LSTELLLLLQPLSVLTFHLDLLFEHHH 259
Query: 67 --PLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGR 99
PL P+ P GP PP+L + A GR
Sbjct: 260 HLPLGPPQAPAPPGP---PPALQQTMQAMLHFGGR 291
>gi|157412245 RUN and SH3 domain containing 1 isoform a [Homo
sapiens]
Length = 902
Score = 29.6 bits (65), Expect = 1.0
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 8 EAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQVSRAGEPG- 66
+AGL +L+ PT ++L RG P + +LL PL LT + E
Sbjct: 619 DAGLLSLLYLPTGFFSLARGGCPS---------LSTELLLLLQPLSVLTFHLDLLFEHHH 669
Query: 67 --PLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGR 99
PL P+ P GP PP+L + A GR
Sbjct: 670 HLPLGPPQAPAPPGP---PPALQQTMQAMLHFGGR 701
>gi|42476123 RUN and SH3 domain containing 1 isoform d [Homo
sapiens]
Length = 433
Score = 29.6 bits (65), Expect = 1.0
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 8 EAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQVSRAGEPG- 66
+AGL +L+ PT ++L RG P + +LL PL LT + E
Sbjct: 150 DAGLLSLLYLPTGFFSLARGGCPS---------LSTELLLLLQPLSVLTFHLDLLFEHHH 200
Query: 67 --PLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGR 99
PL P+ P GP PP+L + A GR
Sbjct: 201 HLPLGPPQAPAPPGP---PPALQQTMQAMLHFGGR 232
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 29.6 bits (65), Expect = 1.0
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 30 PGRAHRDWYH-RIDPTVL--LGALPLRSLTRQVSRAGEPGPLPRPRRSVPVGPLGSPPSL 86
PGR R + P+V L PLR R G+ GP P P R +P P G +
Sbjct: 84 PGRRGRATTRGEVQPSVRPPLSHRPLRGGGMGRGRPGK-GPPPNPSRRLPPAPPGGRRTW 142
Query: 87 LSHLFA--SAAGTGRER 101
LS L +A G GR R
Sbjct: 143 LSALATGPAAGGAGRRR 159
>gi|46409434 hypothetical protein LOC388759 [Homo sapiens]
Length = 237
Score = 29.6 bits (65), Expect = 1.0
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 53 RSLTRQVSRAGEPGPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGRERARGDHH-ERGV 111
RSL Q R P P P P P GP SP SL +A ARG + + G
Sbjct: 119 RSLREQKQRRAGPDPTPSP-APPPAGPRPSPGSL-----GPSAPAAPRTARGAYELQGGA 172
Query: 112 RDEVPVQLFTGA 123
+ P Q GA
Sbjct: 173 SQDGPGQAAVGA 184
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 29.6 bits (65), Expect = 1.0
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 10 GLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQVSRAGEPGPLP 69
G A++ L+Y G PGR R R DP A P R + + +R P P P
Sbjct: 53 GAAQIRAAEVLVY----GAPPGRVSR-LLERFDPP----AAPRRRGSPERARPPPPPPPP 103
Query: 70 RPRRSVPVGPLGSPPS 85
P R P P SPP+
Sbjct: 104 APPRPPPAAP--SPPA 117
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 29.6 bits (65), Expect = 1.0
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 39 HRIDPTVLLGALPLRSLTRQVSRAGEPGPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTG 98
H + P V LP + + +V P PLP+ GP G H +++
Sbjct: 507 HEVQPGVPPPPLP-KEQSHEVQPGAPPPPLPKAPSESARGPPGPTDGAKVHEDSTSPAVA 565
Query: 99 RERARGDHHERGVRDEVP 116
+E +R G ++E P
Sbjct: 566 KEGSRSPGDSPGGKEEAP 583
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 29.6 bits (65), Expect = 1.0
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 10 GLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQVSRAGEPGPLP 69
G A++ L+Y G PGR R R DP A P R + + +R P P P
Sbjct: 53 GAAQIRAAEVLVY----GAPPGRVSR-LLERFDPP----AAPRRRGSPERARPPPPPPPP 103
Query: 70 RPRRSVPVGPLGSPPS 85
P R P P SPP+
Sbjct: 104 APPRPPPAAP--SPPA 117
>gi|38373682 pleckstrin homology domain containing family G member 5
isoform a [Homo sapiens]
Length = 1006
Score = 29.6 bits (65), Expect = 1.0
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 38 YHRIDPTVLLGALPLRSLTRQVSRAGE------PGPLPRPRRSVPVGPLGSPPSLL 87
Y + PT L + + V RA E P P PR RR PV L PP LL
Sbjct: 819 YGTLSPTSLQDFVAPGPMAELVPRAPESPRVPSPPPSPRLRRRTPVQLLSCPPHLL 874
>gi|111154084 pleckstrin homology domain containing family G member
5 isoform b [Homo sapiens]
Length = 1083
Score = 29.6 bits (65), Expect = 1.0
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 38 YHRIDPTVLLGALPLRSLTRQVSRAGE------PGPLPRPRRSVPVGPLGSPPSLL 87
Y + PT L + + V RA E P P PR RR PV L PP LL
Sbjct: 896 YGTLSPTSLQDFVAPGPMAELVPRAPESPRVPSPPPSPRLRRRTPVQLLSCPPHLL 951
>gi|111154088 pleckstrin homology domain containing family G member
5 isoform a [Homo sapiens]
Length = 1006
Score = 29.6 bits (65), Expect = 1.0
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 38 YHRIDPTVLLGALPLRSLTRQVSRAGE------PGPLPRPRRSVPVGPLGSPPSLL 87
Y + PT L + + V RA E P P PR RR PV L PP LL
Sbjct: 819 YGTLSPTSLQDFVAPGPMAELVPRAPESPRVPSPPPSPRLRRRTPVQLLSCPPHLL 874
>gi|111154080 pleckstrin homology domain containing family G member
5 isoform a [Homo sapiens]
Length = 1006
Score = 29.6 bits (65), Expect = 1.0
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 38 YHRIDPTVLLGALPLRSLTRQVSRAGE------PGPLPRPRRSVPVGPLGSPPSLL 87
Y + PT L + + V RA E P P PR RR PV L PP LL
Sbjct: 819 YGTLSPTSLQDFVAPGPMAELVPRAPESPRVPSPPPSPRLRRRTPVQLLSCPPHLL 874
>gi|111154078 pleckstrin homology domain containing family G member
5 isoform c [Homo sapiens]
Length = 1062
Score = 29.6 bits (65), Expect = 1.0
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 38 YHRIDPTVLLGALPLRSLTRQVSRAGE------PGPLPRPRRSVPVGPLGSPPSLL 87
Y + PT L + + V RA E P P PR RR PV L PP LL
Sbjct: 875 YGTLSPTSLQDFVAPGPMAELVPRAPESPRVPSPPPSPRLRRRTPVQLLSCPPHLL 930
>gi|17149834 sortilin 1 preproprotein [Homo sapiens]
Length = 831
Score = 29.3 bits (64), Expect = 1.3
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 37 WYHRIDPTVLLGALPLRSLTRQVSRAGEPGPLPRPRRSVPVGPLGSPPSLLSHLFASAAG 96
W H + +LL LP +L++ A P P PR S P+G + + G
Sbjct: 14 WPHGLGLLLLLQLLPPSTLSQDRLDAPPPPAAPLPRWSGPIGVSWGLRAAAAGGAFPRGG 73
Query: 97 TGRERARGDHHERG-VRDEV 115
R A G+ E G VRD V
Sbjct: 74 RWRRSAPGEDEECGRVRDFV 93
>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
Length = 868
Score = 29.3 bits (64), Expect = 1.3
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 34 HRDWYHRIDPTVLLGALPLRSLTRQVSRAGEPGPLPRPRRSVPVGPLGSPPSLL 87
HR H P A PL +A +P P P RS P GP SP +LL
Sbjct: 149 HRHHAHHAHPRASASAPPL-------PQAPQP---PAPSRSAPGGPAASPSALL 192
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 28.9 bits (63), Expect = 1.7
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 61 RAGEPGPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGRERARG 104
R GEPG P P GP G PP L + A AG E+A G
Sbjct: 151 RDGEPGTPGNPGPPGPPGPPG-PPGLGGNFAAQMAGGFDEKAGG 193
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 28.9 bits (63), Expect = 1.7
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 61 RAGEPGPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGRERARG 104
R GEPG P P GP G PP L + A AG E+A G
Sbjct: 82 RDGEPGTPGNPGPPGPPGPPG-PPGLGGNFAAQMAGGFDEKAGG 124
>gi|239755172 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 28.9 bits (63), Expect = 1.7
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 62 AGEPGPLPRPRRSVP-----VGPLGSPPSLLSHLFASAAGTGRERARGDH 106
AG P PLP P P VGP SPPS + +A+ T R DH
Sbjct: 140 AGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRT--SVLRSDH 187
>gi|239749673 PREDICTED: hypothetical protein XP_002347141 [Homo
sapiens]
Length = 295
Score = 28.9 bits (63), Expect = 1.7
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 62 AGEPGPLPRPRRSVP-----VGPLGSPPSLLSHLFASAAGTGRERARGDH 106
AG P PLP P P VGP SPPS + +A+ T R DH
Sbjct: 170 AGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRT--SVLRSDH 217
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 28.9 bits (63), Expect = 1.7
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 47 LGALPLRSLTRQVSRAGEPGPLPRPRRSVPVGP--LGSPPSLLSHLFASAA----GTGRE 100
+GA + R+ EPGP R R+ P GP L PP+ SHL +S A G
Sbjct: 435 VGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPA--SHLGSSPAQAPSGEAGR 492
Query: 101 RARG 104
RA G
Sbjct: 493 RAGG 496
>gi|239743940 PREDICTED: hypothetical protein XP_002342994 [Homo
sapiens]
Length = 295
Score = 28.9 bits (63), Expect = 1.7
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 62 AGEPGPLPRPRRSVP-----VGPLGSPPSLLSHLFASAAGTGRERARGDH 106
AG P PLP P P VGP SPPS + +A+ T R DH
Sbjct: 170 AGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRT--SVLRSDH 217
>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
sapiens]
Length = 585
Score = 28.9 bits (63), Expect = 1.7
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 47 LGALPLRSLTRQVSRAGEPGPLPRPRRSVPVGP--LGSPPSLLSHLFASAA----GTGRE 100
+GA + R+ EPGP R R+ P GP L PP+ SHL +S A G
Sbjct: 435 VGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPA--SHLGSSPAQAPSGEAGR 492
Query: 101 RARG 104
RA G
Sbjct: 493 RAGG 496
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,970,885
Number of Sequences: 37866
Number of extensions: 384482
Number of successful extensions: 2176
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2022
Number of HSP's gapped (non-prelim): 220
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.