Guide to the Human Genome
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Name: C12orf61 Sequence: fasta or formatted (131aa) NCBI GI: 28557723
Description:

hypothetical protein LOC283416

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.3         24           3
 C cysteine            1.5          2           1
 D aspartate           0.8          1           1
 E glutamate           4.6          6           1
 F phenylalanine       0.0          0           0
 G glycine             9.2         12           2
 H histidine           3.8          5           1
 I isoleucine          1.5          2           2
 K lysine              3.1          4           1
 L leucine             6.9          9           1
 M methionine          0.8          1           1
 N asparagine          0.8          1           1
 P proline            16.8         22           2
 Q glutamine           4.6          6           2
 R arginine            9.9         13           2
 S serine              8.4         11           2
 T threonine           3.1          4           1
 V valine              4.6          6           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC283416 
CDKN1C                0.077   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.077   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.077   cyclin-dependent kinase inhibitor 1C isoform a 
TAF4                  0.077   TBP-associated factor 4 
SAMD1                 0.073   sterile alpha motif domain containing 1 
C6orf132              0.073   PREDICTED: chromosome 6 open reading frame 132 [Hom...
LOC100131455          0.073   PREDICTED: hypothetical protein 
C6orf132              0.073   PREDICTED: chromosome 6 open reading frame 132 [Hom...
LOC100131455          0.073   PREDICTED: hypothetical protein 
C6orf132              0.073   PREDICTED: hypothetical protein LOC647024 
LOC100131455          0.073   PREDICTED: hypothetical protein 
RALGDS                0.069   ral guanine nucleotide dissociation stimulator isofo...
RALGDS                0.069   ral guanine nucleotide dissociation stimulator isof...
LOC645602             0.065   PREDICTED: hypothetical protein 
LOC645602             0.065   PREDICTED: hypothetical protein 
LOC645602             0.065   PREDICTED: hypothetical protein 
OGFR                  0.057   opioid growth factor receptor 
CECR2                 0.053   cat eye syndrome chromosome region, candidate 2 [Ho...
LOC100131225          0.053   PREDICTED: hypothetical protein 
ESPN                  0.053   espin 
BZRAP1                0.053   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.053   peripheral benzodiazepine receptor-associated prote...
LMTK3                 0.049   lemur tyrosine kinase 3 
RERE                  0.049   atrophin-1 like protein isoform b 
RERE                  0.049   atrophin-1 like protein isoform a 
RERE                  0.049   atrophin-1 like protein isoform a 
CASKIN1               0.049   CASK interacting protein 1 
WASF1                 0.049   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.049   Wiskott-Aldrich syndrome protein family member 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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