Guide to the Human Genome
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Name: PTPMT1 Sequence: fasta or formatted (201aa) NCBI GI: 148224884
Description:

protein tyrosine phosphatase, mitochondrial 1 isoform 1

Referenced in:

Dual-Specificity Phosphatases

Other entries for this name:
alt prot [151aa] protein tyrosine phosphatase, mitochondrial 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         17           2
 C cysteine            1.5          3           1
 D aspartate           3.5          7           1
 E glutamate           5.0         10           2
 F phenylalanine       3.0          6           1
 G glycine             6.0         12           1
 H histidine           3.0          6           1
 I isoleucine          5.0         10           1
 K lysine              5.5         11           1
 L leucine            11.9         24           2
 M methionine          2.0          4           1
 N asparagine          2.0          4           1
 P proline             3.5          7           1
 Q glutamine           5.5         11           1
 R arginine            8.5         17           1
 S serine              5.0         10           2
 T threonine           7.5         15           1
 V valine              8.0         16           1
 W tryptophan          1.5          3           1
 Y tyrosine            4.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase, mitochondrial 1 isofo... 
PTPMT1                0.251   protein tyrosine phosphatase, mitochondrial 1 isofo...
SSH3                  0.066   slingshot homolog 3 
DUSP16                0.061   dual specificity phosphatase 16 
DUSP1                 0.056   dual specificity phosphatase 1 
DUSP22                0.053   dual specificity phosphatase 22 
DUPD1                 0.045   dual specificity phosphatase and pro isomerase domai...
DUSP5                 0.045   dual specificity phosphatase 5 
DUSP15                0.045   dual specificity phosphatase 15 isoform a 
DUSP23                0.045   dual specificity phosphatase 23 
DUSP8                 0.042   dual specificity phosphatase 8 
EPM2A                 0.042   laforin isoform b 
EPM2A                 0.042   laforin isoform a 
DUSP28                0.042   dual specificity phosphatase 28 
DUSP4                 0.040   dual specificity phosphatase 4 isoform 1 
DUSP4                 0.040   dual specificity phosphatase 4 isoform 2 
DUSP26                0.040   dual specificity phosphatase 26 
DUSP2                 0.040   dual specificity phosphatase 2 
RNGTT                 0.037   RNA guanylyltransferase and 5'-phosphatase 
SSH2                  0.037   slingshot 2 
DUSP10                0.037   dual specificity phosphatase 10 isoform b 
DUSP10                0.037   dual specificity phosphatase 10 isoform b 
DUSP10                0.037   dual specificity phosphatase 10 isoform a 
DUSP14                0.034   dual specificity phosphatase 14 
SSH1                  0.032   slingshot 1 isoform 1 
SSH1                  0.032   slingshot 1 isoform 3 
SSH1                  0.032   slingshot 1 isoform 2 
DUSP12                0.032   dual specificity phosphatase 12 
DUSP27                0.032   dual specificity phosphatase 27 
PTPDC1                0.032   protein tyrosine phosphatase domain containing 1 pro...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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