Guide to the Human Genome
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Name: TBC1D7 Sequence: fasta or formatted (293aa) NCBI GI: 221139904
Description:

TBC1 domain family, member 7 isoform a

Referenced in:

Rab

Other entries for this name:
alt mRNA [293aa] TBC1 domain family, member 7 isoform a
alt prot [266aa] TBC1 domain family, member 7 isoform b
alt mRNA [293aa] TBC1 domain family, member 7 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         17           2
 C cysteine            2.4          7           1
 D aspartate           5.8         17           2
 E glutamate           7.2         21           2
 F phenylalanine       4.8         14           1
 G glycine             2.7          8           1
 H histidine           2.7          8           2
 I isoleucine          3.8         11           1
 K lysine              7.8         23           2
 L leucine            12.3         36           2
 M methionine          3.1          9           2
 N asparagine          2.0          6           1
 P proline             5.5         16           2
 Q glutamine           3.4         10           1
 R arginine            5.8         17           2
 S serine              7.8         23           2
 T threonine           3.4         10           1
 V valine              8.2         24           2
 W tryptophan          1.7          5           1
 Y tyrosine            3.8         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC1 domain family, member 7 isoform a 
TBC1D7                1.000   TBC1 domain family, member 7 isoform a 
TBC1D7                1.000   TBC1 domain family, member 7 isoform a 
TBC1D7                0.877   TBC1 domain family, member 7 isoform b 
TBCKL                 0.026   TBC domain-containing protein kinase-like 
TBC1D10B              0.025   TBC1 domain family, member 10B 
TBC1D4                0.025   TBC1 domain family, member 4 
TBC1D19               0.018   TBC1 domain family, member 19 
TBC1D30               0.018   PREDICTED: TBC1 domain family, member 30 
TBC1D30               0.018   PREDICTED: TBC1 domain family, member 30 
TBC1D30               0.018   PREDICTED: TBC1 domain family, member 30 
TBC1D22B              0.018   TBC1 domain family, member 22B 
TBC1D10C              0.018   TBC1 domain family, member 10C 
USP6NL                0.018   USP6 N-terminal like isoform 1 
USP6NL                0.018   USP6 N-terminal like isoform 2 
TBC1D23               0.018   TBC1 domain family, member 23 
EVI5L                 0.014   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.014   ecotropic viral integration site 5-like isoform 2 [H...
TBC1D10A              0.014   TBC1 domain family, member 10A 
TBC1D1                0.014   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
TBC1D13               0.014   TBC1 domain family, member 13 
TBC1D16               0.009   TBC1 domain family, member 16 
GRTP1                 0.009   growth hormone regulated TBC protein 1 
VANGL2                0.007   vang-like 2 
TEP1                  0.007   telomerase-associated protein 1 
ARHGEF9               0.007   Cdc42 guanine exchange factor 9 
SGSM3                 0.007   small G protein signaling modulator 3 
TBC1D2                0.005   TBC1 domain family, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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