Guide to the Human Genome
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Name: TBC1D22B Sequence: fasta or formatted (505aa) NCBI GI: 40068063
Description:

TBC1 domain family, member 22B

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         29           2
 C cysteine            1.0          5           1
 D aspartate           5.3         27           2
 E glutamate           7.7         39           3
 F phenylalanine       5.1         26           2
 G glycine             3.0         15           1
 H histidine           2.8         14           2
 I isoleucine          5.3         27           2
 K lysine              5.3         27           2
 L leucine            10.7         54           3
 M methionine          1.6          8           1
 N asparagine          5.0         25           2
 P proline             5.9         30           2
 Q glutamine           5.7         29           2
 R arginine            7.5         38           2
 S serine              7.5         38           3
 T threonine           4.4         22           2
 V valine              5.0         25           2
 W tryptophan          2.0         10           1
 Y tyrosine            3.4         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC1 domain family, member 22B 
TBC1D22A              0.611   TBC1 domain family, member 22A 
TBC1D13               0.068   TBC1 domain family, member 13 
TBC1D15               0.062   TBC1 domain family, member 15 isoform 2 
TBC1D15               0.062   TBC1 domain family, member 15 isoform 3 
TBC1D15               0.062   TBC1 domain family, member 15 isoform 1 
TBC1D16               0.056   TBC1 domain family, member 16 
TBC1D17               0.052   TBC1 domain family, member 17 
TBCKL                 0.050   TBC domain-containing protein kinase-like 
TBC1D2B               0.041   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.041   TBC1 domain family, member 2B isoform b 
SGSM3                 0.036   small G protein signaling modulator 3 
TBC1D12               0.034   TBC1 domain family, member 12 
TBC1D2                0.033   TBC1 domain family, member 2 
TBC1D5                0.032   TBC1 domain family, member 5 isoform a 
TBC1D5                0.032   TBC1 domain family, member 5 isoform b 
TBC1D5                0.032   TBC1 domain family, member 5 isoform b 
TBC1D14               0.032   TBC1 domain family, member 14 isoform b 
TBC1D14               0.032   TBC1 domain family, member 14 isoform a 
TBC1D14               0.032   TBC1 domain family, member 14 isoform a 
GRTP1                 0.029   growth hormone regulated TBC protein 1 
TBC1D25               0.026   TBC1 domain family, member 25 
RABGAP1               0.020   RAB GTPase activating protein 1 
RABGAP1L              0.018   RAB GTPase activating protein 1-like isoform A [Homo...
TBC1D10A              0.018   TBC1 domain family, member 10A 
TBC1D9                0.018   TBC1 domain family, member 9 (with GRAM domain) [Ho...
TBC1D10B              0.018   TBC1 domain family, member 10B 
USP6NL                0.017   USP6 N-terminal like isoform 1 
USP6NL                0.017   USP6 N-terminal like isoform 2 
SGSM1                 0.016   RUN and TBC1 domain containing 2 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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