Guide to the Human Genome
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Name: TBC1D7 Sequence: fasta or formatted (266aa) NCBI GI: 221139909
Description:

TBC1 domain family, member 7 isoform b

Referenced in:

Rab

Other entries for this name:
alt prot [293aa] TBC1 domain family, member 7 isoform a
alt prot [293aa] TBC1 domain family, member 7 isoform a
alt prot [293aa] TBC1 domain family, member 7 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         16           2
 C cysteine            2.3          6           1
 D aspartate           6.0         16           2
 E glutamate           7.5         20           2
 F phenylalanine       4.5         12           1
 G glycine             3.0          8           1
 H histidine           3.0          8           2
 I isoleucine          4.1         11           1
 K lysine              7.9         21           2
 L leucine            11.7         31           2
 M methionine          3.0          8           2
 N asparagine          2.3          6           1
 P proline             5.3         14           2
 Q glutamine           3.4          9           1
 R arginine            5.6         15           2
 S serine              7.9         21           2
 T threonine           3.0          8           1
 V valine              8.3         22           2
 W tryptophan          1.5          4           1
 Y tyrosine            3.8         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC1 domain family, member 7 isoform b 
TBC1D7                0.971   TBC1 domain family, member 7 isoform a 
TBC1D7                0.971   TBC1 domain family, member 7 isoform a 
TBC1D7                0.971   TBC1 domain family, member 7 isoform a 
TBCKL                 0.029   TBC domain-containing protein kinase-like 
TBC1D10B              0.027   TBC1 domain family, member 10B 
TBC1D4                0.027   TBC1 domain family, member 4 
TBC1D19               0.019   TBC1 domain family, member 19 
TBC1D30               0.019   PREDICTED: TBC1 domain family, member 30 
TBC1D30               0.019   PREDICTED: TBC1 domain family, member 30 
TBC1D30               0.019   PREDICTED: TBC1 domain family, member 30 
TBC1D10C              0.019   TBC1 domain family, member 10C 
USP6NL                0.019   USP6 N-terminal like isoform 1 
USP6NL                0.019   USP6 N-terminal like isoform 2 
TBC1D10A              0.016   TBC1 domain family, member 10A 
TBC1D1                0.016   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
EVI5L                 0.014   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.014   ecotropic viral integration site 5-like isoform 2 [H...
TBC1D16               0.010   TBC1 domain family, member 16 
GRTP1                 0.010   growth hormone regulated TBC protein 1 
TBC1D23               0.010   TBC1 domain family, member 23 
VANGL2                0.008   vang-like 2 
ARHGEF9               0.008   Cdc42 guanine exchange factor 9 
SGSM3                 0.008   small G protein signaling modulator 3 
TBC1D2                0.006   TBC1 domain family, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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