Guide to the Human Genome
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Name: TBC1D19 Sequence: fasta or formatted (526aa) NCBI GI: 157388983
Description:

TBC1 domain family, member 19

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         36           3
 C cysteine            1.0          5           1
 D aspartate           4.0         21           2
 E glutamate           7.4         39           2
 F phenylalanine       5.5         29           3
 G glycine             3.8         20           1
 H histidine           2.1         11           1
 I isoleucine          5.5         29           2
 K lysine              5.3         28           2
 L leucine            15.4         81           4
 M methionine          1.7          9           1
 N asparagine          3.4         18           1
 P proline             5.7         30           2
 Q glutamine           5.1         27           2
 R arginine            4.2         22           1
 S serine              8.0         42           2
 T threonine           2.9         15           1
 V valine              6.3         33           1
 W tryptophan          1.3          7           1
 Y tyrosine            4.6         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC1 domain family, member 19 
RABGAP1               0.016   RAB GTPase activating protein 1 
TBCKL                 0.015   TBC domain-containing protein kinase-like 
TBC1D2B               0.013   TBC1 domain family, member 2B isoform a 
TBC1D10C              0.013   TBC1 domain family, member 10C 
TBC1D2B               0.013   TBC1 domain family, member 2B isoform b 
EVI5L                 0.012   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.012   ecotropic viral integration site 5-like isoform 2 [H...
TBC1D2                0.010   TBC1 domain family, member 2 
TBC1D7                0.010   TBC1 domain family, member 7 isoform b 
TBC1D7                0.010   TBC1 domain family, member 7 isoform a 
TBC1D7                0.010   TBC1 domain family, member 7 isoform a 
TBC1D7                0.010   TBC1 domain family, member 7 isoform a 
EVI5                  0.010   ecotropic viral integration site 5 
TBC1D23               0.008   TBC1 domain family, member 23 
SGSM3                 0.008   small G protein signaling modulator 3 
PTPRD                 0.007   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.007   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.007   protein tyrosine phosphatase, receptor type, D isofo...
TBC1D12               0.007   TBC1 domain family, member 12 
TBC1D9                0.007   TBC1 domain family, member 9 (with GRAM domain) [Ho...
RABGAP1L              0.006   RAB GTPase activating protein 1-like isoform A [Homo...
USP6NL                0.006   USP6 N-terminal like isoform 1 
USP6NL                0.006   USP6 N-terminal like isoform 2 
UBE4B                 0.006   ubiquitination factor E4B isoform 2 
UBE4B                 0.006   ubiquitination factor E4B isoform 1 
TBC1D14               0.005   TBC1 domain family, member 14 isoform b 
TBC1D14               0.005   TBC1 domain family, member 14 isoform a 
TBC1D14               0.005   TBC1 domain family, member 14 isoform a 
TBC1D9B               0.005   TBC1 domain family, member 9B (with GRAM domain) iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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