Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 22091448
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22091448 GDNF family receptor alpha 4 isoform b precursor
[Homo sapiens]
(299 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Ho... 626 e-180
gi|11545875 GDNF family receptor alpha 4 isoform a precursor [Ho... 467 e-132
gi|224282178 GDNF family receptor alpha 1 isoform b preproprotei... 141 8e-34
gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein... 141 8e-34
gi|4885269 GDNF family receptor alpha 1 isoform a preproprotein ... 141 8e-34
gi|47078235 GDNF family receptor alpha 2 preproprotein [Homo sap... 135 6e-32
gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo sap... 105 5e-23
gi|148231468 GDNF family receptor alpha like [Homo sapiens] 57 2e-08
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 42 5e-04
gi|18079216 CASK interacting protein 1 [Homo sapiens] 42 9e-04
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 39 0.004
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 39 0.004
gi|169211520 PREDICTED: hypothetical protein [Homo sapiens] 39 0.007
gi|169194701 PREDICTED: hypothetical protein [Homo sapiens] 38 0.009
gi|239753089 PREDICTED: hypothetical protein [Homo sapiens] 38 0.009
gi|89031838 PREDICTED: hypothetical protein [Homo sapiens] 38 0.009
gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo ... 38 0.009
gi|89030878 PREDICTED: hypothetical protein [Homo sapiens] 38 0.009
gi|239741520 PREDICTED: hypothetical protein XP_002342220 [Homo ... 38 0.009
gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens] 38 0.012
gi|48762934 alpha 2 type I collagen [Homo sapiens] 37 0.016
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 37 0.028
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 36 0.036
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 36 0.036
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 36 0.047
gi|110832843 TBP-associated factor 4 [Homo sapiens] 36 0.047
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 36 0.047
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 35 0.061
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ... 35 0.080
gi|46391104 hypothetical protein LOC83541 [Homo sapiens] 35 0.080
>gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Homo
sapiens]
Length = 299
Score = 626 bits (1615), Expect = e-180
Identities = 299/299 (100%), Positives = 299/299 (100%)
Query: 1 MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCP 60
MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCP
Sbjct: 1 MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCP 60
Query: 61 RARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP 120
RARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP
Sbjct: 61 RARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP 120
Query: 121 LNFCERSRVCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAG 180
LNFCERSRVCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAG
Sbjct: 121 LNFCERSRVCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAG 180
Query: 181 PGRPLPARLRGPRGVPAGTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNR 240
PGRPLPARLRGPRGVPAGTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNR
Sbjct: 181 PGRPLPARLRGPRGVPAGTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNR 240
Query: 241 CLDGAIQAFASGWPPVLLDQLNPQGDPEHSLLQVSSTGRALERRSLLSILPVLALPALL 299
CLDGAIQAFASGWPPVLLDQLNPQGDPEHSLLQVSSTGRALERRSLLSILPVLALPALL
Sbjct: 241 CLDGAIQAFASGWPPVLLDQLNPQGDPEHSLLQVSSTGRALERRSLLSILPVLALPALL 299
>gi|11545875 GDNF family receptor alpha 4 isoform a precursor [Homo
sapiens]
Length = 269
Score = 467 bits (1202), Expect = e-132
Identities = 242/299 (80%), Positives = 245/299 (81%), Gaps = 30/299 (10%)
Query: 1 MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCP 60
MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCP
Sbjct: 1 MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCP 60
Query: 61 RARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP 120
RARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP
Sbjct: 61 RARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP 120
Query: 121 LNFCERSRVCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAG 180
LNFCERSRVCR A + +PA P G + R R AG
Sbjct: 121 LNFCERSRVCRPRLLA------FQVSCTPAPSAP---------DGCLLDQGARCLRAYAG 165
Query: 181 PGRPLPARLRGPRGVPAGTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNR 240
GTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNR
Sbjct: 166 L---------------VGTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNR 210
Query: 241 CLDGAIQAFASGWPPVLLDQLNPQGDPEHSLLQVSSTGRALERRSLLSILPVLALPALL 299
CLDGAIQAFASGWPPVLLDQLNPQGDPEHSLLQVSSTGRALERRSLLSILPVLALPALL
Sbjct: 211 CLDGAIQAFASGWPPVLLDQLNPQGDPEHSLLQVSSTGRALERRSLLSILPVLALPALL 269
>gi|224282178 GDNF family receptor alpha 1 isoform b preproprotein
[Homo sapiens]
Length = 460
Score = 141 bits (355), Expect = 8e-34
Identities = 82/238 (34%), Positives = 111/238 (46%), Gaps = 37/238 (15%)
Query: 23 GNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARGPPALTHA 82
GN C+DAA+AC D C++ RS Y+ C + C R +C +ALR+FF + P ++
Sbjct: 146 GNNCLDAAKACNLDDICKKYRSAYITPCTTSVSNDVCNRRKCHKALRQFFDKVPAKHSYG 205
Query: 83 LLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRCARAAAGPWRG 142
+LFC C AC ERRRQT VP C++ P+CL + C+ + +CR A
Sbjct: 206 MLFCSCRDIACTERRRQTIVPVCSYE--EREKPNCLNLQDSCKTNYICRSRLA------D 257
Query: 143 WGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAVT 202
+ P R ++ L+ S GT +T
Sbjct: 258 FFTNCQPESRSVSSCLKENYADCLLAYSGL------------------------IGTVMT 293
Query: 203 PNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNRCLDGAIQAFASG-----WPP 255
PNY+D+ S VAPWCDC SGN E+C F F N CL AIQAF +G W P
Sbjct: 294 PNYIDSSSLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQP 351
>gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein
[Homo sapiens]
Length = 460
Score = 141 bits (355), Expect = 8e-34
Identities = 82/238 (34%), Positives = 111/238 (46%), Gaps = 37/238 (15%)
Query: 23 GNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARGPPALTHA 82
GN C+DAA+AC D C++ RS Y+ C + C R +C +ALR+FF + P ++
Sbjct: 146 GNNCLDAAKACNLDDICKKYRSAYITPCTTSVSNDVCNRRKCHKALRQFFDKVPAKHSYG 205
Query: 83 LLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRCARAAAGPWRG 142
+LFC C AC ERRRQT VP C++ P+CL + C+ + +CR A
Sbjct: 206 MLFCSCRDIACTERRRQTIVPVCSYE--EREKPNCLNLQDSCKTNYICRSRLA------D 257
Query: 143 WGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAVT 202
+ P R ++ L+ S GT +T
Sbjct: 258 FFTNCQPESRSVSSCLKENYADCLLAYSGL------------------------IGTVMT 293
Query: 203 PNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNRCLDGAIQAFASG-----WPP 255
PNY+D+ S VAPWCDC SGN E+C F F N CL AIQAF +G W P
Sbjct: 294 PNYIDSSSLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQP 351
>gi|4885269 GDNF family receptor alpha 1 isoform a preproprotein
[Homo sapiens]
Length = 465
Score = 141 bits (355), Expect = 8e-34
Identities = 82/238 (34%), Positives = 111/238 (46%), Gaps = 37/238 (15%)
Query: 23 GNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARGPPALTHA 82
GN C+DAA+AC D C++ RS Y+ C + C R +C +ALR+FF + P ++
Sbjct: 151 GNNCLDAAKACNLDDICKKYRSAYITPCTTSVSNDVCNRRKCHKALRQFFDKVPAKHSYG 210
Query: 83 LLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRCARAAAGPWRG 142
+LFC C AC ERRRQT VP C++ P+CL + C+ + +CR A
Sbjct: 211 MLFCSCRDIACTERRRQTIVPVCSYE--EREKPNCLNLQDSCKTNYICRSRLA------D 262
Query: 143 WGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAVT 202
+ P R ++ L+ S GT +T
Sbjct: 263 FFTNCQPESRSVSSCLKENYADCLLAYSGL------------------------IGTVMT 298
Query: 203 PNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNRCLDGAIQAFASG-----WPP 255
PNY+D+ S VAPWCDC SGN E+C F F N CL AIQAF +G W P
Sbjct: 299 PNYIDSSSLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQP 356
>gi|47078235 GDNF family receptor alpha 2 preproprotein [Homo
sapiens]
Length = 464
Score = 135 bits (339), Expect = 6e-32
Identities = 85/236 (36%), Positives = 111/236 (47%), Gaps = 35/236 (14%)
Query: 20 SVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGG-CPRARCRRALRRFFARGPPA 78
S N C+DAA+AC + C++LRS Y++ C + C R +C +ALR+FF R P
Sbjct: 155 SAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVPSE 214
Query: 79 LTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRCARAAAG 138
T+ +LFC C ACAERRRQT +PSC++ P+CL+ C +CR
Sbjct: 215 YTYRMLFCSCQDQACAERRRQTILPSCSYE--DKEKPNCLDLRGVCRTDHLCRSR----- 267
Query: 139 PWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAG 198
L+ H A S Q PA + G G
Sbjct: 268 --------LADFHANCRA-------------SYQTVTSCPADNYQACLGSYAG----MIG 302
Query: 199 TAVTPNYVDN--VSARVAPWCDCGASGNRREDCEAFRGLFTRNRCLDGAIQAFASG 252
+TPNYVD+ V+PWC C SGN E+CE F FT N CL AIQAF +G
Sbjct: 303 FDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAFGNG 358
>gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo
sapiens]
Length = 400
Score = 105 bits (262), Expect = 5e-23
Identities = 76/239 (31%), Positives = 91/239 (38%), Gaps = 49/239 (20%)
Query: 26 CVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARGPPALTHALLF 85
C+ A CT + +C RLR Y C G C R C R L FF + LL
Sbjct: 162 CLKFAMLCTLNDKCDRLRKAYGEACSGPH----CQRHVCLRQLLTFFEKAAEPHAQGLLL 217
Query: 86 CPCA--GPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRCARAAAGPWRGW 143
CPCA C ERRR T P+CA P P+CLE C +CR
Sbjct: 218 CPCAPNDRGCGERRRNTIAPNCALP---PVAPNCLELRRLCFSDPLCRSRLVDF------ 268
Query: 144 GRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAVTP 203
P + G R R G GTA+TP
Sbjct: 269 -----------QTHCHPMDILGTCATEQSRCLRAYLG---------------LIGTAMTP 302
Query: 204 NYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNRCLDGAI--------QAFASGWP 254
N+V NV+ VA C C SGN +E+CE G F+ N CL AI Q F+ WP
Sbjct: 303 NFVSNVNTSVALSCTCRGSGNLQEECEMLEGFFSHNPCLTEAIAAKMRFHSQLFSQDWP 361
>gi|148231468 GDNF family receptor alpha like [Homo sapiens]
Length = 394
Score = 57.0 bits (136), Expect = 2e-08
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 26 CVDAAEACTADARCQRLRSEYVAQCLGRAAQGG-CPRARCRRALRRFFARGPPALTHALL 84
C++ AEAC D C + Y+ C +A G C +C+ A+R F+ P + L
Sbjct: 131 CLEVAEACVGDVVCNAQLASYLKAC---SANGNPCDLKQCQAAIRFFYQNIPFNIAQMLA 187
Query: 85 FCPCAGP--ACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCR 131
FC CA C + + +CA + PP+CL + C+ +CR
Sbjct: 188 FCDCAQSDIPCQQSKEALHSKTCAVN--MVPPPTCLSVIRSCQNDELCR 234
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 42.4 bits (98), Expect = 5e-04
Identities = 41/137 (29%), Positives = 50/137 (36%), Gaps = 10/137 (7%)
Query: 54 AAQGGCPRARCRRALRRFFARGPPALTHALLFCPCAGPACAER-RRQTFVPSCAFSGPGP 112
AA+ R A R A GPPA A+++ AGP+ A VP+ A P
Sbjct: 9 AAKTSVRRPAAAPAAVRPPAAGPPAAAPAVVYPAAAGPSAASLCAANPLVPAPAAVRPPV 68
Query: 113 APPSCLEPLNFCERSRVCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQ 172
A P P C AAAGP R +P PAA P G P+A
Sbjct: 69 AGPPATAPAVVCP---------AAAGPSAASLRAANPLAVAPAAVRRPAATLGAASPAAV 119
Query: 173 RPRRLPAGPGRPLPARL 189
P + P A L
Sbjct: 120 APAAVCPAAASPSAASL 136
Score = 29.3 bits (64), Expect = 4.4
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 150 AHRPPAAQASPPGLSGLVHPSAQRPRR---LPAGPGRPLPARLRGPRGVPAGTA 200
A RPPAA P +V+P+A P A P P PA +R P P TA
Sbjct: 23 AVRPPAA-GPPAAAPAVVYPAAAGPSAASLCAANPLVPAPAAVRPPVAGPPATA 75
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 41.6 bits (96), Expect = 9e-04
Identities = 35/117 (29%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 87 PCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRCARAAAGPWRGWGRG 146
P GP E +R P P P PP+ +P+ V +AGP
Sbjct: 1251 PLPGPGSPEVKRAHGTPPPVSPKP-PPPPTAPKPVK-----AVAGLPSGSAGP----SPA 1300
Query: 147 LSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAVTP 203
SPA +PPAA A PPG + S +P P P +PA+ A A P
Sbjct: 1301 PSPARQPPAALAKPPGTPPSLGASPAKPPS-PGAPALHVPAKPPRAAAAAAAAAAAP 1356
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 39.3 bits (90), Expect = 0.004
Identities = 52/168 (30%), Positives = 64/168 (38%), Gaps = 48/168 (28%)
Query: 89 AGPACAERR---RQTFVPSCAFSGPGPAPPSCLEP------------LNFCERSRVCRCA 133
A P ER R F+ S GPGP P P + +R+ R A
Sbjct: 669 AAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGA 728
Query: 134 RAAAG--PWRGWG-----RGLSPAHRPPAAQAS--------------PPGLSGLVHPSAQ 172
AG RGW R +P +PPA+ A+ P L G +A
Sbjct: 729 GPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRG--RATAV 786
Query: 173 RPRRLPAGPG-------RPLPARLRGPRGVPA--GTAVTPNYVDNVSA 211
PR LPA PG +P PAR RG GVP+ G +P D SA
Sbjct: 787 APRPLPAAPGFSGLCVLQPFPARSRG-LGVPSQQGPTGSPGCRDRASA 833
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 39.3 bits (90), Expect = 0.004
Identities = 52/168 (30%), Positives = 64/168 (38%), Gaps = 48/168 (28%)
Query: 89 AGPACAERR---RQTFVPSCAFSGPGPAPPSCLEP------------LNFCERSRVCRCA 133
A P ER R F+ S GPGP P P + +R+ R A
Sbjct: 337 AAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGA 396
Query: 134 RAAAG--PWRGWG-----RGLSPAHRPPAAQAS--------------PPGLSGLVHPSAQ 172
AG RGW R +P +PPA+ A+ P L G +A
Sbjct: 397 GPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRG--RATAV 454
Query: 173 RPRRLPAGPG-------RPLPARLRGPRGVPA--GTAVTPNYVDNVSA 211
PR LPA PG +P PAR RG GVP+ G +P D SA
Sbjct: 455 APRPLPAAPGFSGLCVLQPFPARSRG-LGVPSQQGPTGSPGCRDRASA 501
Score = 35.4 bits (80), Expect = 0.061
Identities = 50/182 (27%), Positives = 57/182 (31%), Gaps = 60/182 (32%)
Query: 48 AQCLGRAAQGGC---PRARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPS 104
A GRA P R R R F+A AG A + RR++ P+
Sbjct: 154 AALFGRAVHTAALSGPHCRLRCGARAFYA--------------AAGGASSRRRQRGRNPA 199
Query: 105 CAFSGPGPAPPSCLEPLNFCERSRVCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLS 164
GPGP RG G +P PP ASPP
Sbjct: 200 LIVRGPGPR---------------------------RGGGLTSAPPGLPPL--ASPPPFW 230
Query: 165 GLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAVTPNYVDNVSARVAPWCDCGASGN 224
L P P P GP LP RLR RG G + R W C S N
Sbjct: 231 ELPRPPPPPP---PPGPAL-LPRRLRELRGKEVG----------LRPRTRGWTTCVVSPN 276
Query: 225 RR 226
R
Sbjct: 277 LR 278
>gi|169211520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 38.5 bits (88), Expect = 0.007
Identities = 45/156 (28%), Positives = 54/156 (34%), Gaps = 32/156 (20%)
Query: 22 GGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARGPPALTH 81
GG C A A R + LR + LG+A+ PP L
Sbjct: 160 GGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFPV---------PPLLGR 210
Query: 82 ALLFCPCA---GPACAERRRQTFVPSCA-FSGPGPAPPSCLEPLNFCERSRVCRCA---- 133
PC GPA +RR +TF F GPG +P PL C R
Sbjct: 211 L----PCVLLEGPARCQRRVETFAAGAGLFVGPGASP----SPLPLCRSPSALRSPPRRL 262
Query: 134 RAAAGPWRGWGRGLSPAHRPP-------AAQASPPG 162
+ P WG GL A R P AA A+P G
Sbjct: 263 QRPEKPLSQWGEGLGRARRAPRIETRASAATAAPLG 298
>gi|169194701 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 38.1 bits (87), Expect = 0.009
Identities = 32/75 (42%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 139 PWRGWGRGLSPAH---RP-PAAQASPPGLSGLVHPS---------AQRPRRLPAGPGRPL 185
PW+ G L+PA RP P +A PP SG PS AQRPR + P R
Sbjct: 4 PWQV-GASLAPARAGPRPFPTPRARPPDCSGGHAPSGFPALGLRTAQRPRPFSSSP-RSA 61
Query: 186 PARLRGPRGVPAGTA 200
RLRGPR V G A
Sbjct: 62 SGRLRGPRPVARGPA 76
>gi|239753089 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 38.1 bits (87), Expect = 0.009
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 129 VCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPR--RLPAGPGRP 184
+C AR AAG R SPAH P +AS P G + RPR R+P P P
Sbjct: 1 MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASP 58
>gi|89031838 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 38.1 bits (87), Expect = 0.009
Identities = 32/75 (42%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 139 PWRGWGRGLSPAH---RP-PAAQASPPGLSGLVHPS---------AQRPRRLPAGPGRPL 185
PW+ G L+PA RP P +A PP SG PS AQRPR + P R
Sbjct: 4 PWQV-GASLAPARAGPRPFPTPRARPPDCSGGHAPSGFPALGLRTAQRPRPFSSSP-RSA 61
Query: 186 PARLRGPRGVPAGTA 200
RLRGPR V G A
Sbjct: 62 SGRLRGPRPVARGPA 76
>gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo
sapiens]
Length = 324
Score = 38.1 bits (87), Expect = 0.009
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 129 VCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPR--RLPAGPGRP 184
+C AR AAG R SPAH P +AS P G + RPR R+P P P
Sbjct: 1 MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASP 58
>gi|89030878 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 38.1 bits (87), Expect = 0.009
Identities = 32/75 (42%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 139 PWRGWGRGLSPAH---RP-PAAQASPPGLSGLVHPS---------AQRPRRLPAGPGRPL 185
PW+ G L+PA RP P +A PP SG PS AQRPR + P R
Sbjct: 4 PWQV-GASLAPARAGPRPFPTPRARPPDCSGGHAPSGFPALGLRTAQRPRPFSSSP-RSA 61
Query: 186 PARLRGPRGVPAGTA 200
RLRGPR V G A
Sbjct: 62 SGRLRGPRPVARGPA 76
>gi|239741520 PREDICTED: hypothetical protein XP_002342220 [Homo
sapiens]
Length = 96
Score = 38.1 bits (87), Expect = 0.009
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 129 VCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPR--RLPAGPGRP 184
+C AR AAG R SPAH P +AS P G + RPR R+P P P
Sbjct: 1 MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASP 58
>gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens]
Length = 1024
Score = 37.7 bits (86), Expect = 0.012
Identities = 40/145 (27%), Positives = 49/145 (33%), Gaps = 19/145 (13%)
Query: 68 LRRFFARGPPALTHALLFCPCA---GPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFC 124
LRR GP + PC GP + PS P P S + F
Sbjct: 47 LRRVAGPGPRGRELGRVTAPCTPLRGPPSPRVAPSPWAPSSPTGQPPPGAQSSVVIFRFV 106
Query: 125 ERSRV--CRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPG 182
E++ V A G R W G SPP + + P + R RL A
Sbjct: 107 EKASVRPLNGLPAPGGLSRSWDLG----------GVSPPRPTPALGPGSNRKLRLEASTS 156
Query: 183 RPLPAR----LRGPRGVPAGTAVTP 203
PLPAR L G R + G P
Sbjct: 157 DPLPARGGSALPGSRNLVHGPPAPP 181
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 37.4 bits (85), Expect = 0.016
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 137 AGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSA-QRPRRLPAGPGRPLPARLRGPRGV 195
A + G G GL P PPG +G P Q P P PG+ PA RGP G
Sbjct: 78 AAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGP 137
Query: 196 P 196
P
Sbjct: 138 P 138
Score = 32.7 bits (73), Expect = 0.40
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 152 RPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAVTPNYVDNVSA 211
R P A PG GL+ P R LP PG PA GP G+P G P + A
Sbjct: 432 RGPNGDAGRPGEPGLMGP-----RGLPGSPGNIGPAGKEGPVGLP-GIDGRPGPIGPAGA 485
Query: 212 RVAP 215
R P
Sbjct: 486 RGEP 489
Score = 32.0 bits (71), Expect = 0.68
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 149 PAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPL-PARLRGPRGVPAG 198
P + P A PG G V P+ + R GP P+ PA GPRG P+G
Sbjct: 951 PGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRG-PSG 1000
Score = 30.0 bits (66), Expect = 2.6
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 137 AGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGP-GRPLPARLRGPRGV 195
AGP G+ P + P G +G+V P+ PAGP G P PA RG G
Sbjct: 726 AGPAGAAGQ---PGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGP 782
Query: 196 PAGTAVTPNYVDNVSARVAPWCDCGASG 223
P T + R P G SG
Sbjct: 783 PGMTG-----FPGAAGRTGPPGPSGISG 805
Score = 28.5 bits (62), Expect = 7.5
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 149 PAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGV--PAGTA 200
P P + PPG SG P+ R P+GP P P +G GV GTA
Sbjct: 582 PGPAGPRGERGPPGESGAAGPTGPIGSRGPSGP--PGPDGNKGEPGVVGAVGTA 633
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 36.6 bits (83), Expect = 0.028
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 26/107 (24%)
Query: 108 SGPGPAPPSCLE-------------PLNFCERSRVCRCARAAAG-----PWRGWG----- 144
+ P P PP+ LE P E +V CA A G P GW
Sbjct: 616 ASPAPRPPASLEVPSAKGQVAGPKQPGRVLELPKVGSCAEAGEGSRGSRPGPGWAGSPKT 675
Query: 145 ---RGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPAR 188
+G S + P A+A P + P RP+ LP G GR +R
Sbjct: 676 EKEKGSSWRNWPGEAKARPQEQESVQPPGPARPQSLPQGKGRSRRSR 722
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 36.2 bits (82), Expect = 0.036
Identities = 53/184 (28%), Positives = 71/184 (38%), Gaps = 26/184 (14%)
Query: 102 VPSCAFSGPGPAPPSCLEPLNFCERSRVCRCARAAAGPWRGWGRGLSPAHRPPAAQASPP 161
V SCA G PAPP E S R A G G SP P + SPP
Sbjct: 131 VRSCAPPGRCPAPPHPRESTT----SFASAPPRPAPGLEPQRGPAASPPQEPSSRPPSPP 186
Query: 162 -GLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAVTPNYVDNVSARVAPWCDCG 220
GLS P+ P PG+P P P A +P+ +A AP
Sbjct: 187 AGLS--TEPAGPGTAPRPFLPGQPAEVDGNPPPAAPEAPAASPS-----TASPAP----A 235
Query: 221 ASGNRREDCEAFRGLFTRNRCLDGAIQAFASGWPPVLLDQLNPQGDPEHSLLQVSSTGRA 280
A G+ R+ E F L R++ + +A G+ LD + + PE + + G A
Sbjct: 236 APGDLRQ--EHFDRLIRRSK-----LWCYAKGF---ALDTPSLRRGPERPPAKGPARGAA 285
Query: 281 LERR 284
+RR
Sbjct: 286 KKRR 289
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 36.2 bits (82), Expect = 0.036
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 112 PAPPSCLEPLNFCERSRVCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSA 171
P PP + R R + + + R SP +PP +SPP + + PSA
Sbjct: 333 PPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSA 392
Query: 172 QRPRR--LPAGPGRPLPARLRGP 192
PRR P+ P P P P
Sbjct: 393 SPPRRRHRPSPPATPPPKTRHSP 415
Score = 29.6 bits (65), Expect = 3.4
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 131 RCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPL--PAR 188
R R A P SP R P +SPP + S QR R+ P+ RP+ +R
Sbjct: 668 RSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQR-RQSPSPSTRPIRRVSR 726
Query: 189 LRGPRGVPAGTAVTPNYVDNVSA 211
P+ + + +P V VS+
Sbjct: 727 TPEPKKIKKAASPSPQSVRRVSS 749
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 35.8 bits (81), Expect = 0.047
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 88 CAGPACAERRRQTFVPSC----AFSGPGPAPPSCLEPLNFCERSRVCRCA-RAAAGPWRG 142
C GP R + C ++ GP P S + L+ V R A RA A W G
Sbjct: 10 CPGPLRLRRTSPLVLLGCPEKGSWVGPSPVLSSLMAGLSLRSPEVVGRVASRARARTWEG 69
Query: 143 WGRGLSPAHRPPAAQASPPGLSG--LVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAG 198
G + +P A ++ G+ G L H A RPR+ G L GP G P+G
Sbjct: 70 GKEGHAAVPQP-ATRSGRLGVWGGPLRHSWAPRPRQASQTRGGGGGPSLPGPAGRPSG 126
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 35.8 bits (81), Expect = 0.047
Identities = 51/167 (30%), Positives = 63/167 (37%), Gaps = 27/167 (16%)
Query: 52 GRAAQGGC-PRARCRRALRRFFARGPPALTHALLFCPCAGPA--CAERRRQTFVPSCAF- 107
GRA GG P+ + RR PA A L P G A CA VP+ A
Sbjct: 93 GRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAP------VPAAAAV 146
Query: 108 -SGPGPAPPSCLEPLNFCERSRVCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGL 166
+GP PAP +P ARA GP G G G P PA + L+G
Sbjct: 147 AAGPEPAPAGPAKPAG-----PAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGS 201
Query: 167 V------HPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAV-TPNYV 206
H +A + GP LP P+ GT + TP +V
Sbjct: 202 AALLNSHHAAAPAVSLVNNGPAALLPL----PKPAAPGTVIQTPPFV 244
Score = 34.3 bits (77), Expect = 0.14
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 135 AAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRR--LPAGPGRPLPARLRGP 192
A AGP A PP A + PG G P PRR +PAGP P A+LR P
Sbjct: 71 AGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPP-AAKLRPP 129
Query: 193 RGVPAGT 199
AG+
Sbjct: 130 PEGSAGS 136
Score = 28.5 bits (62), Expect = 7.5
Identities = 38/129 (29%), Positives = 43/129 (33%), Gaps = 19/129 (14%)
Query: 89 AGPACAERRRQTFVPSCAFSGPGPAP-----PSCLEPLNFCERSRVCRCARAAAGPWRGW 143
AGPA R GPGP P P + LN A A A
Sbjct: 161 AGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNN 220
Query: 144 G-RGLSPAHRPPA-----------AQASPPGLSGLVHPSAQRPRRLPAG--PGRPLPARL 189
G L P +P A A+PP + P+A P A P P PA L
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATL 280
Query: 190 RGPRGVPAG 198
P G PAG
Sbjct: 281 ARPPGHPAG 289
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 35.8 bits (81), Expect = 0.047
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 146 GLSPAHRPPAAQASPPGLSGLVHPSA-------QRPRRLPAGPGRPLPARLRGPRGVPAG 198
GL P PP + A+PP ++ P+A + P LPA PG PLP P VP
Sbjct: 794 GLPPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEELPAAPG-PLPPPPPPPPPVPGP 852
Query: 199 TAVTP 203
+ P
Sbjct: 853 VTLPP 857
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 35.4 bits (80), Expect = 0.061
Identities = 40/132 (30%), Positives = 50/132 (37%), Gaps = 28/132 (21%)
Query: 76 PPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRCARA 135
PPA A P PA A + A P PAPP P+ +R R A A
Sbjct: 108 PPAPPRA----PRGAPAAA---------AAAAPPPTPAPPPPPAPVAAAAPARAPRAAAA 154
Query: 136 AA------GPWRGWGRG--LSPAHRPPAAQASPPGLSGLVHPS-------AQRPRRLPAG 180
AA GP + R +P PP A A+PP ++ P A R LP
Sbjct: 155 AATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPP 214
Query: 181 PGRPLPARLRGP 192
P P P + + P
Sbjct: 215 PQPPAPPQQQQP 226
Score = 31.2 bits (69), Expect = 1.2
Identities = 40/131 (30%), Positives = 44/131 (33%), Gaps = 28/131 (21%)
Query: 73 ARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRC 132
AR P A A P GPA R Q P A P PA P + P
Sbjct: 146 ARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAA-PPPAPAAPPAVAP------------ 192
Query: 133 ARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGP 192
AGP R PPA A P L P A P++ P +P P G
Sbjct: 193 ---PAGPRRA---------PPPAVAAREPPLPPPPQPPAP-PQQQQPPPPQPQPPPEGG- 238
Query: 193 RGVPAGTAVTP 203
V AG A P
Sbjct: 239 -AVRAGGAARP 248
>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
sapiens]
Length = 238
Score = 35.0 bits (79), Expect = 0.080
Identities = 29/91 (31%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 130 CRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLV----------HPSAQRPRRLPA 179
CR GP RG P P + PPG G V P PR P
Sbjct: 28 CRMVCDPHGP-----RGPGPDGAPASVPPFPPGAKGEVGRRGKAGLRGPPGPPGPRGPPG 82
Query: 180 GPGRPLPARLRGPRGVPAGTAVTPNYVDNVS 210
PGRP P GP P G A YV ++
Sbjct: 83 EPGRPGPPGPPGPG--PGGVAPAAGYVPRIA 111
>gi|46391104 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 35.0 bits (79), Expect = 0.080
Identities = 36/112 (32%), Positives = 43/112 (38%), Gaps = 12/112 (10%)
Query: 77 PALTHALLFCPCAGPACAERRRQTFVPSC-AFSGPGPAPPSCLEPLNFCERSRVCRCARA 135
P L+ LF P E RR PS A GP P L+ L+ +C +
Sbjct: 69 PLLSKQPLFSP-------ETRRTVLTPSRRALPGPCRRPQLDLDILS--SLIDLCDSPVS 119
Query: 136 AAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPA 187
A R GR PPA PP + V RP LPA P RP P+
Sbjct: 120 PAEASRTPGRAEGAGRPPPATPPRPPPSTSAVRRVDVRP--LPASPARPCPS 169
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,929,693
Number of Sequences: 37866
Number of extensions: 912307
Number of successful extensions: 7345
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 535
Number of HSP's that attempted gapping in prelim test: 6027
Number of HSP's gapped (non-prelim): 1786
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.