Guide to the Human Genome
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Name: SPAG6 Sequence: fasta or formatted (509aa) NCBI GI: 6912678
Description:

sperm associated antigen 6 isoform 1

Referenced in:

Additional Interaction Domain Families
Testes and Sperm

Other entries for this name:
alt prot [458aa] sperm associated antigen 6 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         63           4
 C cysteine            2.0         10           1
 D aspartate           4.3         22           2
 E glutamate           5.9         30           2
 F phenylalanine       1.8          9           1
 G glycine             4.1         21           2
 H histidine           2.6         13           1
 I isoleucine          5.7         29           2
 K lysine              5.9         30           2
 L leucine            12.4         63           3
 M methionine          1.8          9           2
 N asparagine          3.5         18           2
 P proline             4.9         25           2
 Q glutamine           6.1         31           2
 R arginine            3.5         18           2
 S serine              6.5         33           2
 T threonine           3.7         19           1
 V valine              9.4         48           2
 W tryptophan          0.4          2           1
 Y tyrosine            3.1         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sperm associated antigen 6 isoform 1 
SPAG6                 0.856   sperm associated antigen 6 isoform 2 
KPNA5                 0.060   karyopherin alpha 5 
KPNA7                 0.056   karyopherin 7 
KPNA1                 0.055   karyopherin alpha 1 
KPNA4                 0.054   karyopherin alpha 4 
KPNA6                 0.053   karyopherin alpha 6 
KPNA3                 0.049   karyopherin alpha 3 
KPNA2                 0.046   karyopherin alpha 2 
ANKAR                 0.042   ankyrin and armadillo repeat containing 
ARMC4                 0.025   armadillo repeat containing 4 
ARMC3                 0.018   armadillo repeat containing 3 
CTNNB1                0.016   catenin (cadherin-associated protein), beta 1, 88kD...
CTNNB1                0.016   catenin (cadherin-associated protein), beta 1, 88kD...
CTNNB1                0.016   catenin (cadherin-associated protein), beta 1, 88kDa ...
SIL1                  0.016   SIL1 protein precursor 
SIL1                  0.016   SIL1 protein precursor 
STK36                 0.016   serine/threonine kinase 36 
RTDR1                 0.015   rhabdoid tumor deletion region protein 1 
MTOR                  0.014   FK506 binding protein 12-rapamycin associated protein...
RAP1GDS1              0.014   RAP1, GTP-GDP dissociation stimulator 1 isoform 3 [...
RAP1GDS1              0.014   RAP1, GTP-GDP dissociation stimulator 1 isoform 2 [...
RAP1GDS1              0.014   RAP1, GTP-GDP dissociation stimulator 1 isoform 1 [...
C7orf27               0.014   hypothetical protein LOC221927 
RAP1GDS1              0.012   RAP1, GTP-GDP dissociation stimulator 1 isoform 5 [...
RAP1GDS1              0.012   RAP1, GTP-GDP dissociation stimulator 1 isoform 4 [...
TMCO6                 0.012   transmembrane and coiled-coil domains 6 
AP1B1                 0.012   adaptor-related protein complex 1 beta 1 subunit iso...
AP1B1                 0.012   adaptor-related protein complex 1 beta 1 subunit iso...
SARM1                 0.012   sterile alpha and TIR motif containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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