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Search of human proteins with 22027554
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22027554 voltage-dependent calcium channel gamma-6 subunit
isoform a [Homo sapiens]
(260 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22027554 voltage-dependent calcium channel gamma-6 subunit is... 530 e-151
gi|22027557 voltage-dependent calcium channel gamma-6 subunit is... 423 e-119
gi|22027560 voltage-dependent calcium channel gamma-6 subunit is... 229 2e-60
gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Ho... 166 1e-41
gi|11141861 claudin 9 [Homo sapiens] 40 0.002
gi|22748835 transmembrane protein 178 [Homo sapiens] 37 0.023
gi|124107616 claudin 23 [Homo sapiens] 33 0.33
gi|21361975 voltage-dependent calcium channel gamma-7 subunit [H... 33 0.33
gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Ho... 32 0.42
gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Ho... 32 0.42
gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2 ... 32 0.55
gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1 [... 32 0.55
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens] 32 0.72
gi|31377722 PERP, TP53 apoptosis effector [Homo sapiens] 30 1.6
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 30 1.6
gi|37537696 M-phase phosphoprotein 9 [Homo sapiens] 30 1.6
gi|85540447 solute carrier family 26, member 11 [Homo sapiens] 30 2.8
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens] 29 3.6
gi|40549411 glial cell derived neurotrophic factor isoform 2 pre... 29 3.6
gi|4503975 glial cell derived neurotrophic factor isoform 1 prep... 29 3.6
gi|226437592 transmembrane protein 114 [Homo sapiens] 29 3.6
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 29 3.6
gi|239756061 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|239750588 PREDICTED: hypothetical protein XP_002347440 [Homo ... 28 6.1
gi|239744885 PREDICTED: hypothetical protein XP_002344275 [Homo ... 28 6.1
gi|222136611 poliovirus receptor-related 4 [Homo sapiens] 28 6.1
gi|74275350 translocator protein isoform PBR [Homo sapiens] 28 8.0
gi|24497587 adenylate cyclase 4 [Homo sapiens] 28 8.0
gi|145046269 rotatin [Homo sapiens] 28 8.0
gi|50080197 olfactory receptor, family 13, subfamily C, member 9... 28 8.0
>gi|22027554 voltage-dependent calcium channel gamma-6 subunit
isoform a [Homo sapiens]
Length = 260
Score = 530 bits (1366), Expect = e-151
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE
Sbjct: 1 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
Query: 61 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 120
FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF
Sbjct: 61 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 120
Query: 121 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL 180
TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL
Sbjct: 121 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL 180
Query: 181 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL 240
SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL
Sbjct: 181 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL 240
Query: 241 LTLPSWPWGSLCPKRGHRAT 260
LTLPSWPWGSLCPKRGHRAT
Sbjct: 241 LTLPSWPWGSLCPKRGHRAT 260
>gi|22027557 voltage-dependent calcium channel gamma-6 subunit
isoform b [Homo sapiens]
Length = 214
Score = 423 bits (1088), Expect = e-119
Identities = 214/260 (82%), Positives = 214/260 (82%), Gaps = 46/260 (17%)
Query: 1 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE
Sbjct: 1 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
Query: 61 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 120
FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF
Sbjct: 61 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 120
Query: 121 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL 180
TTGENARIFQRTTKK
Sbjct: 121 TTGENARIFQRTTKK--------------------------------------------- 135
Query: 181 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL 240
GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL
Sbjct: 136 -GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL 194
Query: 241 LTLPSWPWGSLCPKRGHRAT 260
LTLPSWPWGSLCPKRGHRAT
Sbjct: 195 LTLPSWPWGSLCPKRGHRAT 214
>gi|22027560 voltage-dependent calcium channel gamma-6 subunit
isoform c [Homo sapiens]
Length = 189
Score = 229 bits (584), Expect = 2e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE
Sbjct: 1 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
Query: 61 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPG 110
FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPG
Sbjct: 61 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPG 110
Score = 168 bits (426), Expect = 4e-42
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 182 GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLL 241
GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLL
Sbjct: 111 GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLL 170
Query: 242 TLPSWPWGSLCPKRGHRAT 260
TLPSWPWGSLCPKRGHRAT
Sbjct: 171 TLPSWPWGSLCPKRGHRAT 189
>gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Homo
sapiens]
Length = 222
Score = 166 bits (421), Expect = 1e-41
Identities = 84/211 (39%), Positives = 126/211 (59%), Gaps = 11/211 (5%)
Query: 38 KVKLALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVP 97
KV++ L G LA+ +V T+ W L+ + + + CEAAH GLW+ CTKR +P
Sbjct: 8 KVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKR-----IP 62
Query: 98 VDRD-TCGPAELPGEANCTYFKFFTTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGC 156
+D TCGP LPGE NC+YF+ F GE++ IF+ TT+KE +++AA IA+ L + LG
Sbjct: 63 MDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIILGS 122
Query: 157 LCIIMVLSKGAEFLLRVGAVCFGLSGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYE 216
LC+++ L K ++LLR ++ + +GL +LVS+EV R SV+ ++ + + Y
Sbjct: 123 LCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMI-----DSEDTVWIEYY 177
Query: 217 YSWSLGCGVGAGLILLLGAGCFLLLTLPSWP 247
YSWS C A ++L LG LL +LP P
Sbjct: 178 YSWSFACACAAFILLFLGGLALLLFSLPRMP 208
>gi|11141861 claudin 9 [Homo sapiens]
Length = 217
Score = 40.4 bits (93), Expect = 0.002
Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 41 LALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDR 100
L + LA +G ++S W ++ + N V + GLW +C
Sbjct: 9 LGMTLAVLGWLGTLVSCALPLW-KVTAFIGNSIVVAQVVWEGLWMSCV------------ 55
Query: 101 DTCGPAELPGEANC-TYFKFFTTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCI 159
+ G+ C Y ++ + + + + A ++A+LGL V G C
Sbjct: 56 -----VQSTGQMQCKVYDSLLALPQDLQ-----AARALCVIALLLALLGLLVAITGAQCT 105
Query: 160 IMVLSKGAE--FLLRVGAVCFGLSGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEY 217
V +GA+ +L G + L+G+L+L+ + H A++Q P A L E
Sbjct: 106 TCVEDEGAKARIVLTAGVILL-LAGILVLIPVCWTAH---AIIQDFY-NPLVAEALKREL 160
Query: 218 SWSLGCGVGAGLILLLGAGCFLLLTLP 244
SL G A +L+LG G L T P
Sbjct: 161 GASLYLGWAAAALLMLGGG-LLCCTCP 186
>gi|22748835 transmembrane protein 178 [Homo sapiens]
Length = 297
Score = 36.6 bits (83), Expect = 0.023
Identities = 47/181 (25%), Positives = 71/181 (39%), Gaps = 35/181 (19%)
Query: 78 AAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEAN-CTYFKFFTTG---------ENAR 127
A + GLW+ C + +DRD L G A CT K+ + +
Sbjct: 109 ATYSGLWRKCYF------LGIDRDI-DTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTK 161
Query: 128 IFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLL--RVGAVCFGLSGLLL 185
Q+ ++L LG+AV L C CI+ +S E L V + F ++G+
Sbjct: 162 TIQQDEWHLLHLRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFC 221
Query: 186 LVSLEVFRHSVRALLQRVSPEPPPAPRLTYE--------YSWSLGCG-VGAGLILLLGAG 236
+SL + S+ L R+ P+L Y YSWS+ C G I+ G
Sbjct: 222 TISLCTYAASISYDLNRL-------PKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGL 274
Query: 237 C 237
C
Sbjct: 275 C 275
>gi|124107616 claudin 23 [Homo sapiens]
Length = 292
Score = 32.7 bits (73), Expect = 0.33
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 146 VLGLAVMALGCLCIIMVLSKGAEFLLR-VGAVCFGLSGLLLLVSLEVFRHSV--RALLQR 202
VLGL + +LG C F+L + V ++GLL L+ + + H + R +L
Sbjct: 92 VLGLLLASLGVRC----WQDEPNFVLAGLSGVVLFVAGLLGLIPVSWYNHFLGDRDVL-- 145
Query: 203 VSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW 246
P PA +T + S+SL G +LLLG G L L+ W
Sbjct: 146 ----PAPASPVTVQVSYSLVLGYLGSCLLLLG-GFSLALSFAPW 184
>gi|21361975 voltage-dependent calcium channel gamma-7 subunit [Homo
sapiens]
Length = 275
Score = 32.7 bits (73), Expect = 0.33
Identities = 47/207 (22%), Positives = 75/207 (36%), Gaps = 36/207 (17%)
Query: 41 LALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCE--------AAHLGLWKACTKRLW 92
L+ + A G L ++V T++W+ Y G+ + + A H GLW+ C
Sbjct: 12 LSSVFGACGLLLVGIAVSTDYWL----YMEEGTVLPQNQTTEVKMALHAGLWRVC----- 62
Query: 93 QADVPVDRDTCGPAELPGEANCTYFKFFTTGENARIFQRTTK--KEVNLAAAVIAVLGLA 150
R+ + C ++F E + + T K V A V
Sbjct: 63 ---FFAGRE---------KGRCVASEYFLEPEINLVTENTENILKTVRTATPFPMVSLFL 110
Query: 151 VMALGCLCIIMVLSKGAEFLLRVGAVCFGLSGLLLLVSLEVFRHSVRALLQRVSPEPPPA 210
V + I + L V + F LSGL L+V L ++ S+ V P +
Sbjct: 111 VFTAFVISNIGHIRPQRTILAFVSGIFFILSGLSLVVGLVLYISSIN---DEVMNRPSSS 167
Query: 211 PR-LTYEYSWSLGCGVGAGLILLLGAG 236
+ Y Y WS + +L GAG
Sbjct: 168 EQYFHYRYGWSFAF-AASSFLLKEGAG 193
>gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Homo
sapiens]
Length = 323
Score = 32.3 bits (72), Expect = 0.42
Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 52/204 (25%)
Query: 43 LLLAAVGA----TLAVLSVGTEFWV------------ELNTYKANGSAVCEAAHLGLWKA 86
+LL VGA +L ++VGT++W+ E T K N + H GLW+
Sbjct: 10 MLLTTVGAFAAFSLMTIAVGTDYWLYSRGVCKTKSVSENETSKKNEEVM---THSGLWRT 66
Query: 87 CTKRLWQADVPVDRDTCGPAELPGEANCTYFKFFT-----TGENARIFQRTTKKEVNLAA 141
C C G C F + A F R + A+
Sbjct: 67 C---------------CLEGNFKG--LCKQIDHFPEDADYEADTAEYFLRAVR-----AS 104
Query: 142 AVIAVLGLAVMALGCLCI-IMVLSKGAEFLLRVGAVCFGLSGLLLLVSLEVFRHSVRALL 200
++ +L + ++ +G LCI K ++ + F +GL ++ + V+ +
Sbjct: 105 SIFPILSVILLFMGGLCIAASEFYKTRHNIILSAGIFFVSAGLSNIIGIIVYISA----- 159
Query: 201 QRVSPEPPPAPRLTYEYSWSLGCG 224
P + + +Y Y WS G
Sbjct: 160 NAGDPSKSDSKKNSYSYGWSFYFG 183
>gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Homo
sapiens]
Length = 327
Score = 32.3 bits (72), Expect = 0.42
Identities = 41/202 (20%), Positives = 76/202 (37%), Gaps = 39/202 (19%)
Query: 41 LALLLAAVGA----TLAVLSVGTEFWVELNTYKANGS------------AVCEAAHLGLW 84
L +LL GA +L +++GT++W+ + + NG+ A + H GLW
Sbjct: 8 LQMLLTTAGAFAAFSLMAIAIGTDYWLYSSAHICNGTNLTMDDGPPPRRARGDLTHSGLW 67
Query: 85 KACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFFTTGENARIFQRTTKKEVNLAAAVI 144
+ C E + +C F + + A++V
Sbjct: 68 RVCC-----------------IEGIYKGHCFRINHFPEDNDYDHDSSEYLLRIVRASSVF 110
Query: 145 AVLGLAVMALGCLCI--IMVLSKGAEFLLRVGAVCFGLSGLLLLVSLEVFRHSVRALLQR 202
+L ++ LG LCI + S+ +L G + F +GL ++ + V+ + +
Sbjct: 111 PILSTILLLLGGLCIGAGRIYSRKNNIVLSAG-ILFVAAGLSNIIGIIVY---ISSNTGD 166
Query: 203 VSPEPPPAPRLTYEYSWSLGCG 224
S + + Y Y WS G
Sbjct: 167 PSDKRDEDKKNHYNYGWSFYFG 188
>gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2
[Homo sapiens]
Length = 173
Score = 32.0 bits (71), Expect = 0.55
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 43 LLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKAC 87
L A VG L V+++ T+ W++ Y+ +GS AH GLW+ C
Sbjct: 9 LFCAWVGTILLVVAMATDHWMQ---YRLSGSF----AHQGLWRYC 46
>gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1
[Homo sapiens]
Length = 215
Score = 32.0 bits (71), Expect = 0.55
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 43 LLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKAC 87
L A VG L V+++ T+ W++ Y+ +GS AH GLW+ C
Sbjct: 9 LFCAWVGTILLVVAMATDHWMQ---YRLSGSF----AHQGLWRYC 46
>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
Length = 2229
Score = 31.6 bits (70), Expect = 0.72
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 8 LQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFW 62
L+EE R++ A + G+G S P R K + L L T+ S+GTE W
Sbjct: 1574 LEEERRKKEQAVQVPVKGRGLSSRIPPRFAKKQNNLCLEQGDVTVPGSSLGTEIW 1628
>gi|31377722 PERP, TP53 apoptosis effector [Homo sapiens]
Length = 193
Score = 30.4 bits (67), Expect = 1.6
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 140 AAAVIAVLGLAVMALGCLCIIMVLSKGAEFL--LRVGAVCFGLSGLLLLVSLEVFRHSVR 197
AAA + G ++ + C + G + L LRV L+ + ++SL ++
Sbjct: 76 AAAAMLFCGFIILVI-CFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVKYT 134
Query: 198 ALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGC-FLLLTLPSW 246
Q + PA +TY Y+W+ G G A +IL+ GC F LP++
Sbjct: 135 ---QTFTLHANPA--VTYIYNWAYGFGWAATIILI---GCAFFFCCLPNY 176
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 30.4 bits (67), Expect = 1.6
Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 38/221 (17%)
Query: 37 GKVKLALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCE---------------AAHL 81
G A L A+ L ++GTEFW ++T + + ++H
Sbjct: 1 GLAGAAALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS 60
Query: 82 GLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFFTTGENARIFQRTTKKEVNLAA 141
GLW+ C + C P P + T E++R Q T ++
Sbjct: 61 GLWRTCRV----------QSPCTPLMNPFR-----LENVTVSESSR--QLLT---MHGTF 100
Query: 142 AVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGLSGLLLLVSLEVF-RHSVRALL 200
++ L L +M G + + A LL + + F ++ L + V+ +S A
Sbjct: 101 VILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFR 160
Query: 201 QRVS--PEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFL 239
+ + E ++ + WSL G + + LL FL
Sbjct: 161 EALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 201
>gi|37537696 M-phase phosphoprotein 9 [Homo sapiens]
Length = 1031
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 71 NGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYF--KFFTTGENARI 128
N S+ E G+ K + W+ + V + C P + + N + K T E R
Sbjct: 906 NHSSCPEPVPNGVKKVSVRTAWEKNKSVSYEQCKPVSVTPQGNDFEYTAKIRTLAETERF 965
Query: 129 FQRTTKKEVNLAAAV 143
F TK++ + AA+
Sbjct: 966 FDELTKEKDQIEAAL 980
>gi|85540447 solute carrier family 26, member 11 [Homo sapiens]
Length = 606
Score = 29.6 bits (65), Expect = 2.8
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 172 RVGAVCFGLSGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWS 220
RVG GL +LLL+ L++ R V V PE PP RL+ W+
Sbjct: 198 RVGDAVLGLVCMLLLLVLKLMRDHV----PPVHPEMPPGVRLSRGLVWA 242
>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 29.3 bits (64), Expect = 3.6
Identities = 44/221 (19%), Positives = 80/221 (36%), Gaps = 38/221 (17%)
Query: 37 GKVKLALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCE---------------AAHL 81
G A L A+ L ++GT+FW ++T + + ++H
Sbjct: 7 GLAGAAALTGALSFVLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS 66
Query: 82 GLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFFTTGENARIFQRTTKKEVNLAA 141
GLW+ C + C P P + T E++R Q T ++
Sbjct: 67 GLWRTCRV----------QSPCTPLMNPFR-----LENVTVSESSR--QLLT---MHGTF 106
Query: 142 AVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGLSGLLLLVSLEVF-RHSVRALL 200
++ L L +M G + + A LL + + F ++ L + V+ +S A
Sbjct: 107 VILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFR 166
Query: 201 QRVS--PEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFL 239
+ + E ++ + WSL G + + LL FL
Sbjct: 167 EALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 207
>gi|40549411 glial cell derived neurotrophic factor isoform 2
precursor [Homo sapiens]
Length = 185
Score = 29.3 bits (64), Expect = 3.6
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 9 QEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNTY 68
+E NR+ AA + G+GR G + G V L A+ + L +G E EL
Sbjct: 63 RERNRQAAAANPENSRGKGRRGQRGKNRGCV-----LTAIHLNVTDLGLGYETKEELIFR 117
Query: 69 KANGSAVCEAA 79
+GS C+AA
Sbjct: 118 YCSGS--CDAA 126
>gi|4503975 glial cell derived neurotrophic factor isoform 1
preproprotein [Homo sapiens]
Length = 211
Score = 29.3 bits (64), Expect = 3.6
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 9 QEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNTY 68
+E NR+ AA + G+GR G + G V L A+ + L +G E EL
Sbjct: 89 RERNRQAAAANPENSRGKGRRGQRGKNRGCV-----LTAIHLNVTDLGLGYETKEELIFR 143
Query: 69 KANGSAVCEAA 79
+GS C+AA
Sbjct: 144 YCSGS--CDAA 152
>gi|226437592 transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 29.3 bits (64), Expect = 3.6
Identities = 44/221 (19%), Positives = 80/221 (36%), Gaps = 38/221 (17%)
Query: 37 GKVKLALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCE---------------AAHL 81
G A L A+ L ++GT+FW ++T + + ++H
Sbjct: 7 GLAGAAALTGALSFVLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS 66
Query: 82 GLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFFTTGENARIFQRTTKKEVNLAA 141
GLW+ C + C P P + T E++R Q T ++
Sbjct: 67 GLWRTCRV----------QSPCTPLMNPFR-----LENVTVSESSR--QLLT---MHGTF 106
Query: 142 AVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGLSGLLLLVSLEVF-RHSVRALL 200
++ L L +M G + + A LL + + F ++ L + V+ +S A
Sbjct: 107 VILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFR 166
Query: 201 QRVS--PEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFL 239
+ + E ++ + WSL G + + LL FL
Sbjct: 167 EALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 207
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 29.3 bits (64), Expect = 3.6
Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 25/154 (16%)
Query: 41 LALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDR 100
+A LL+ +G + + G + W + Y ++V + + GLW++C +
Sbjct: 9 VAFLLSILGLAGCIAATGMDMWSTQDLYDNPVTSVFQ--YEGLWRSCVR----------- 55
Query: 101 DTCGPAELPGEANCTYFKFFTTGENARIFQRTTKKEVNLAAAVIAVLGL--AVMALGCLC 158
+ G C +FT + Q + + + V+ +GL ++ AL C+
Sbjct: 56 ------QSSGFTECR--PYFTILGLPAMLQAV--RALMIVGIVLGAIGLLVSIFALKCIR 105
Query: 159 IIMVLSKGAEFLLRVGAVCFGLSGLLLLVSLEVF 192
I + + + F +SGL + + VF
Sbjct: 106 IGSMEDSAKANMTLTSGIMFIVSGLCAIAGVSVF 139
>gi|239756061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 332
Score = 28.5 bits (62), Expect = 6.1
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 16 GAAGRRRAHGQGRSGLTPEREGKVKLALLL 45
G AGRR H +G GL PE G V++ LL
Sbjct: 134 GEAGRRHVHAEGDGGLEPE-HGDVEVIGLL 162
>gi|239750588 PREDICTED: hypothetical protein XP_002347440 [Homo
sapiens]
Length = 510
Score = 28.5 bits (62), Expect = 6.1
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 16 GAAGRRRAHGQGRSGLTPEREGKVKLALLL 45
G AGRR H +G GL PE G V++ LL
Sbjct: 134 GEAGRRHVHAEGDGGLEPE-HGDVEVIGLL 162
>gi|239744885 PREDICTED: hypothetical protein XP_002344275 [Homo
sapiens]
Length = 510
Score = 28.5 bits (62), Expect = 6.1
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 16 GAAGRRRAHGQGRSGLTPEREGKVKLALLL 45
G AGRR H +G GL PE G V++ LL
Sbjct: 134 GEAGRRHVHAEGDGGLEPE-HGDVEVIGLL 162
>gi|222136611 poliovirus receptor-related 4 [Homo sapiens]
Length = 510
Score = 28.5 bits (62), Expect = 6.1
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 96 VPVDRDTCGPAELPGEANCTYFKFFTTGENARIFQRTTK---------KEVNLAAAVIAV 146
V VD DT G L E + Y + ++R Q T K+V+L +A + V
Sbjct: 293 VRVDGDTLGFPPLTTEHSGIYVCHVSNEFSSRDSQVTVDVLDPQEDSGKQVDLVSASVVV 352
Query: 147 LGLAVMALGCLCIIMVL 163
+G+ L CL +++V+
Sbjct: 353 VGVIAALLFCLLVVVVV 369
>gi|74275350 translocator protein isoform PBR [Homo sapiens]
Length = 169
Score = 28.1 bits (61), Expect = 8.0
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 207 PPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW---------PWGSLCPKRGH 257
PP P + + + SLGC VG+ + G + L PSW WG+L G+
Sbjct: 3 PPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGY 62
>gi|24497587 adenylate cyclase 4 [Homo sapiens]
Length = 1077
Score = 28.1 bits (61), Expect = 8.0
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 204 SPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSWPWGS 250
SP PPP+ L YE +SL L+LLLG L L + W S
Sbjct: 6 SPRPPPSEDLFYETYYSLSQQYPL-LLLLLGIVLCALAALLAVAWAS 51
>gi|145046269 rotatin [Homo sapiens]
Length = 2226
Score = 28.1 bits (61), Expect = 8.0
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 136 EVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGLSGLLLLVSLEV--FR 193
EV L +A + +++ A+ L ++ + K +EFL + L L + +SLE
Sbjct: 463 EVMLVHHRMAFISISLFAVRLLQTLLPVEKASEFLSEPMSTALFLLSLDMPISLEYPNIH 522
Query: 194 HSVRALLQRVSPEPPPAPRLTYEYSWSLGC 223
+V A L++++ E + T E +S+ C
Sbjct: 523 EAVVAYLEQLNSENYSIYKRTAEAVYSIEC 552
>gi|50080197 olfactory receptor, family 13, subfamily C, member 9
[Homo sapiens]
Length = 318
Score = 28.1 bits (61), Expect = 8.0
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 149 LAVMALGCLCIIMVLSKGAEFLLRVGAVCFGLSGLLLLV 187
LAVM L C I G EFL+ V + F L LLL+V
Sbjct: 182 LAVMKLACADI-----SGNEFLMLVATILFTLMPLLLIV 215
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,846,077
Number of Sequences: 37866
Number of extensions: 490243
Number of successful extensions: 2277
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2255
Number of HSP's gapped (non-prelim): 32
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.