Guide to the Human Genome
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Name: SPG20 Sequence: fasta or formatted (666aa) NCBI GI: 21703346
Description:

spartin

Referenced in:

Cytoskeleton

Other entries for this name:
alt mRNA [666aa] spartin
alt mRNA [666aa] spartin
alt mRNA [666aa] spartin
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         57           2
 C cysteine            1.5         10           1
 D aspartate           4.4         29           2
 E glutamate           9.2         61           3
 F phenylalanine       2.4         16           2
 G glycine             7.5         50           2
 H histidine           2.0         13           2
 I isoleucine          3.5         23           2
 K lysine              8.0         53           3
 L leucine             7.8         52           2
 M methionine          1.4          9           1
 N asparagine          4.7         31           2
 P proline             6.6         44           3
 Q glutamine           5.4         36           2
 R arginine            3.6         24           1
 S serine              7.4         49           2
 T threonine           4.7         31           1
 V valine              8.0         53           2
 W tryptophan          1.1          7           1
 Y tyrosine            2.7         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spartin 
SPG20                 1.000   spartin 
SPG20                 1.000   spartin 
SPG20                 1.000   spartin 
SPAST                 0.023   spastin isoform 2 
SPAST                 0.021   spastin isoform 1 
SYNPO2L               0.012   synaptopodin 2-like isoform a 
SYNPO2L               0.012   synaptopodin 2-like isoform b 
NAV2                  0.008   neuron navigator 2 isoform 3 
NAV2                  0.008   neuron navigator 2 isoform 1 
NAV2                  0.008   neuron navigator 2 isoform 2 
ATN1                  0.008   atrophin-1 
ATN1                  0.008   atrophin-1 
RNASEN                0.008   ribonuclease III, nuclear isoform 2 
RNASEN                0.008   ribonuclease III, nuclear isoform 1 
BAT2D1                0.008   HBxAg transactivated protein 2 
GPR152                0.008   G protein-coupled receptor 152 
DKFZP564O0823         0.007   DKFZP564O0823 protein 
LOC440829             0.007   PREDICTED: transmembrane protein 46-like 
LOC440829             0.007   PREDICTED: transmembrane protein 46-like 
CUX2                  0.007   cut-like 2 
FAM123A               0.007   hypothetical protein LOC219287 isoform 2 
FAM123A               0.007   hypothetical protein LOC219287 isoform 1 
MUC7                  0.006   mucin 7, secreted precursor 
MUC7                  0.006   mucin 7, secreted precursor 
MUC7                  0.006   mucin 7, secreted precursor 
FURIN                 0.006   furin preproprotein 
GON4L                 0.006   gon-4-like isoform a 
NASP                  0.006   nuclear autoantigenic sperm protein isoform 2 
NASP                  0.006   nuclear autoantigenic sperm protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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