Guide to the Human Genome
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Name: DKFZP564O0823 Sequence: fasta or formatted (310aa) NCBI GI: 54400758
Description:

DKFZP564O0823 protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         25           2
 C cysteine            0.6          2           1
 D aspartate           3.2         10           2
 E glutamate           6.1         19           3
 F phenylalanine       1.6          5           1
 G glycine             5.2         16           2
 H histidine           2.9          9           1
 I isoleucine          4.2         13           1
 K lysine              1.6          5           1
 L leucine             7.1         22           2
 M methionine          1.3          4           1
 N asparagine          3.9         12           2
 P proline            10.3         32           2
 Q glutamine           2.3          7           1
 R arginine            1.6          5           1
 S serine             15.8         49           3
 T threonine          13.9         43           4
 V valine              7.1         22           2
 W tryptophan          1.3          4           1
 Y tyrosine            1.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DKFZP564O0823 protein 
MUC2                  0.077   mucin 2 precursor 
LOC100133714          0.059   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.059   PREDICTED: mucin 12 
MUC12                 0.059   PREDICTED: mucin 12 
MUC17                 0.057   mucin 17 
LOC100294420          0.057   PREDICTED: similar to mucin 2 
MUC6                  0.054   mucin 6, gastric 
MUC5AC                0.054   mucin 5AC 
MUC12                 0.054   PREDICTED: mucin 12, cell surface associated 
LOC100133790          0.054   PREDICTED: intestinal mucin-like, partial 
LOC729792             0.051   PREDICTED: hypothetical protein 
LOC729792             0.051   PREDICTED: hypothetical protein 
LOC729792             0.051   PREDICTED: hypothetical protein 
LOC100294501          0.051   PREDICTED: hypothetical protein 
LOC100294249          0.051   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.051   PREDICTED: hypothetical protein 
LOC100294204          0.051   PREDICTED: hypothetical protein 
LOC100294136          0.051   PREDICTED: hypothetical protein 
LOC100294091          0.051   PREDICTED: hypothetical protein 
LOC730401             0.051   PREDICTED: hypothetical protein 
MUC7                  0.051   mucin 7, secreted precursor 
MUC3A                 0.051   PREDICTED: mucin 3A, intestinal 
MUC7                  0.051   mucin 7, secreted precursor 
MUC7                  0.051   mucin 7, secreted precursor 
MUC12                 0.051   PREDICTED: mucin 12 
MUC5B                 0.051   mucin 5, subtype B, tracheobronchial 
LOC100130716          0.049   PREDICTED: similar to mucin 11 
LOC100130716          0.049   PREDICTED: similar to Mucin-12 
PRG4                  0.049   proteoglycan 4 isoform D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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