Guide to the Human Genome
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Name: ZNF563 Sequence: fasta or formatted (476aa) NCBI GI: 21687237
Description:

zinc finger protein 563

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9         14           1
 C cysteine            6.3         30           1
 D aspartate           2.5         12           1
 E glutamate           8.0         38           2
 F phenylalanine       4.0         19           2
 G glycine             6.9         33           3
 H histidine           7.8         37           2
 I isoleucine          3.2         15           1
 K lysine              9.2         44           2
 L leucine             3.8         18           2
 M methionine          2.7         13           1
 N asparagine          2.5         12           2
 P proline             4.8         23           1
 Q glutamine           4.2         20           1
 R arginine            8.2         39           2
 S serine              9.2         44           3
 T threonine           4.8         23           2
 V valine              3.8         18           2
 W tryptophan          0.8          4           1
 Y tyrosine            4.2         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 563 
ZNF443                0.717   zinc finger protein 443 
ZNF799                0.715   zinc finger protein 799 
ZNF442                0.709   zinc finger protein 442 
ZNF44                 0.699   zinc finger protein 44 
ZNF823                0.681   ZFP-36 for a zinc finger protein 
ZNF627                0.543   zinc finger protein 627 
ZNF441                0.542   zinc finger protein 441 
ZNF136                0.540   zinc finger protein 136 
ZNF564                0.537   zinc finger protein 564 
ZNF709                0.536   zinc finger protein 709 isoform a 
ZNF14                 0.516   zinc finger protein 14 
ZNF20                 0.516   zinc finger protein 20 
ZNF700                0.516   zinc finger protein 700 
ZNF433                0.503   zinc finger protein 433 
ZNF439                0.503   zinc finger protein 439 
ZNF440                0.500   zinc finger protein 440 
ZNF791                0.494   zinc finger protein 791 
ZNF490                0.492   zinc finger protein 490 
LOC729747             0.483   similar to zinc finger protein 709 
ZNF709                0.482   zinc finger protein 709 isoform b 
ZNF491                0.465   zinc finger protein 491 
LOC100292533          0.464   PREDICTED: similar to zinc finger protein 564 [Homo...
LOC100290363          0.462   PREDICTED: hypothetical protein XP_002347962 
LOC100287841          0.462   PREDICTED: hypothetical protein XP_002343682 
LOC100290283          0.450   PREDICTED: hypothetical protein XP_002347961 
ZNF555                0.429   zinc finger protein 555 
ZNF844                0.408   zinc finger protein 844 
ZNF763                0.405   zinc finger protein 440 like 
ZNF77                 0.402   zinc finger protein 77 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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