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Search of human proteins with 21687270
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21687270 MARVEL domain containing 2 isoform beta [Homo
sapiens]
(457 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21687270 MARVEL domain containing 2 isoform beta [Homo sapiens] 950 0.0
gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens] 896 0.0
gi|4505487 occludin [Homo sapiens] 57 3e-08
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 43 7e-04
gi|38569495 ELL associated factor 1 [Homo sapiens] 42 0.001
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi... 40 0.006
gi|7705755 plasmolipin [Homo sapiens] 38 0.022
gi|5902148 uroplakin 1A [Homo sapiens] 37 0.029
gi|65301122 MARVEL domain containing 3 isoform 1 [Homo sapiens] 37 0.029
gi|32130536 CKLF-like MARVEL transmembrane domain containing 8 [... 37 0.037
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 37 0.049
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 37 0.049
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 37 0.049
gi|187761324 shootin1 isoform a [Homo sapiens] 35 0.11
gi|18426913 drebrin 1 isoform b [Homo sapiens] 35 0.18
gi|18426915 drebrin 1 isoform a [Homo sapiens] 35 0.18
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 34 0.24
gi|4758222 dual-specificity tyrosine-(Y)-phosphorylation regulat... 34 0.32
gi|5922001 dual-specificity tyrosine-(Y)-phosphorylation regulat... 34 0.32
gi|5921999 dual-specificity tyrosine-(Y)-phosphorylation regulat... 34 0.32
gi|61744475 solute carrier family 3, member 2 isoform a [Homo sa... 34 0.32
gi|18959210 WIRE protein [Homo sapiens] 34 0.32
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.41
gi|150378539 piccolo isoform 1 [Homo sapiens] 33 0.41
gi|16418397 MAL2 proteolipid protein [Homo sapiens] 33 0.54
gi|27734961 hypothetical protein LOC160298 [Homo sapiens] 33 0.54
gi|62953127 polyhomeotic 1-like [Homo sapiens] 33 0.70
gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapi... 33 0.70
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 33 0.70
gi|50511340 shootin1 isoform b [Homo sapiens] 33 0.70
>gi|21687270 MARVEL domain containing 2 isoform beta [Homo sapiens]
Length = 457
Score = 950 bits (2455), Expect = 0.0
Identities = 457/457 (100%), Positives = 457/457 (100%)
Query: 1 MSNDGRSRNRDRRYDEVPSDLPYQDTTIRTHPILHDSERAVSADPLPPPPLPLQPPFGPD 60
MSNDGRSRNRDRRYDEVPSDLPYQDTTIRTHPILHDSERAVSADPLPPPPLPLQPPFGPD
Sbjct: 1 MSNDGRSRNRDRRYDEVPSDLPYQDTTIRTHPILHDSERAVSADPLPPPPLPLQPPFGPD 60
Query: 61 FYSSDTEEPAIAPDLKPVRRFVPDSWKNFFRGKKKDPEWDKPVSDIRYISDGVECSPPAS 120
FYSSDTEEPAIAPDLKPVRRFVPDSWKNFFRGKKKDPEWDKPVSDIRYISDGVECSPPAS
Sbjct: 61 FYSSDTEEPAIAPDLKPVRRFVPDSWKNFFRGKKKDPEWDKPVSDIRYISDGVECSPPAS 120
Query: 121 PARPNHRSPLNSCKDPYGGSEGTFSSRKEADAVFPRDPYGSLDRHTQTVRTYSEKVEEYN 180
PARPNHRSPLNSCKDPYGGSEGTFSSRKEADAVFPRDPYGSLDRHTQTVRTYSEKVEEYN
Sbjct: 121 PARPNHRSPLNSCKDPYGGSEGTFSSRKEADAVFPRDPYGSLDRHTQTVRTYSEKVEEYN 180
Query: 181 LRYSYMKSWAGLLRILGVVELLLGAGVFACVTAYIHKDSEWYNLFGYSQPYGMGGVGGLG 240
LRYSYMKSWAGLLRILGVVELLLGAGVFACVTAYIHKDSEWYNLFGYSQPYGMGGVGGLG
Sbjct: 181 LRYSYMKSWAGLLRILGVVELLLGAGVFACVTAYIHKDSEWYNLFGYSQPYGMGGVGGLG 240
Query: 241 SMYGGYYYTGPKTPFVLVVAGLAWITTIIILVLGMSMYYRTILLDSNWWPLTEFGINVAL 300
SMYGGYYYTGPKTPFVLVVAGLAWITTIIILVLGMSMYYRTILLDSNWWPLTEFGINVAL
Sbjct: 241 SMYGGYYYTGPKTPFVLVVAGLAWITTIIILVLGMSMYYRTILLDSNWWPLTEFGINVAL 300
Query: 301 FILYMAAAIVYVNDTNRGGLCYYPLFNTPVNAVFCRVEGGQIAAMIFLFVTMIVYLISAL 360
FILYMAAAIVYVNDTNRGGLCYYPLFNTPVNAVFCRVEGGQIAAMIFLFVTMIVYLISAL
Sbjct: 301 FILYMAAAIVYVNDTNRGGLCYYPLFNTPVNAVFCRVEGGQIAAMIFLFVTMIVYLISAL 360
Query: 361 VCLKLWRHEAARRHREYMEQQEINEPSLSSKRKMCEMATSGDRQRDSEVNFKELRTAKMK 420
VCLKLWRHEAARRHREYMEQQEINEPSLSSKRKMCEMATSGDRQRDSEVNFKELRTAKMK
Sbjct: 361 VCLKLWRHEAARRHREYMEQQEINEPSLSSKRKMCEMATSGDRQRDSEVNFKELRTAKMK 420
Query: 421 PELLSGHIPPRPANFFVFLVEMGFHRVSQDDLDLLTS 457
PELLSGHIPPRPANFFVFLVEMGFHRVSQDDLDLLTS
Sbjct: 421 PELLSGHIPPRPANFFVFLVEMGFHRVSQDDLDLLTS 457
>gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens]
Length = 558
Score = 896 bits (2316), Expect = 0.0
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MSNDGRSRNRDRRYDEVPSDLPYQDTTIRTHPILHDSERAVSADPLPPPPLPLQPPFGPD 60
MSNDGRSRNRDRRYDEVPSDLPYQDTTIRTHPILHDSERAVSADPLPPPPLPLQPPFGPD
Sbjct: 1 MSNDGRSRNRDRRYDEVPSDLPYQDTTIRTHPILHDSERAVSADPLPPPPLPLQPPFGPD 60
Query: 61 FYSSDTEEPAIAPDLKPVRRFVPDSWKNFFRGKKKDPEWDKPVSDIRYISDGVECSPPAS 120
FYSSDTEEPAIAPDLKPVRRFVPDSWKNFFRGKKKDPEWDKPVSDIRYISDGVECSPPAS
Sbjct: 61 FYSSDTEEPAIAPDLKPVRRFVPDSWKNFFRGKKKDPEWDKPVSDIRYISDGVECSPPAS 120
Query: 121 PARPNHRSPLNSCKDPYGGSEGTFSSRKEADAVFPRDPYGSLDRHTQTVRTYSEKVEEYN 180
PARPNHRSPLNSCKDPYGGSEGTFSSRKEADAVFPRDPYGSLDRHTQTVRTYSEKVEEYN
Sbjct: 121 PARPNHRSPLNSCKDPYGGSEGTFSSRKEADAVFPRDPYGSLDRHTQTVRTYSEKVEEYN 180
Query: 181 LRYSYMKSWAGLLRILGVVELLLGAGVFACVTAYIHKDSEWYNLFGYSQPYGMGGVGGLG 240
LRYSYMKSWAGLLRILGVVELLLGAGVFACVTAYIHKDSEWYNLFGYSQPYGMGGVGGLG
Sbjct: 181 LRYSYMKSWAGLLRILGVVELLLGAGVFACVTAYIHKDSEWYNLFGYSQPYGMGGVGGLG 240
Query: 241 SMYGGYYYTGPKTPFVLVVAGLAWITTIIILVLGMSMYYRTILLDSNWWPLTEFGINVAL 300
SMYGGYYYTGPKTPFVLVVAGLAWITTIIILVLGMSMYYRTILLDSNWWPLTEFGINVAL
Sbjct: 241 SMYGGYYYTGPKTPFVLVVAGLAWITTIIILVLGMSMYYRTILLDSNWWPLTEFGINVAL 300
Query: 301 FILYMAAAIVYVNDTNRGGLCYYPLFNTPVNAVFCRVEGGQIAAMIFLFVTMIVYLISAL 360
FILYMAAAIVYVNDTNRGGLCYYPLFNTPVNAVFCRVEGGQIAAMIFLFVTMIVYLISAL
Sbjct: 301 FILYMAAAIVYVNDTNRGGLCYYPLFNTPVNAVFCRVEGGQIAAMIFLFVTMIVYLISAL 360
Query: 361 VCLKLWRHEAARRHREYMEQQEINEPSLSSKRKMCEMATSGDRQRDSEVNFKELRTAKMK 420
VCLKLWRHEAARRHREYMEQQEINEPSLSSKRKMCEMATSGDRQRDSEVNFKELRTAKMK
Sbjct: 361 VCLKLWRHEAARRHREYMEQQEINEPSLSSKRKMCEMATSGDRQRDSEVNFKELRTAKMK 420
Query: 421 PELLSGHIPP 430
PELLSGHIPP
Sbjct: 421 PELLSGHIPP 430
>gi|4505487 occludin [Homo sapiens]
Length = 522
Score = 57.4 bits (137), Expect = 3e-08
Identities = 68/290 (23%), Positives = 116/290 (40%), Gaps = 61/290 (21%)
Query: 113 VECSPPASPA--RPNHRSPLNSCKDPYGGSEGTFSSRKEADAVFPRDPYGSLDRHTQTVR 170
+E PP P +PNH +P N D YGG R +
Sbjct: 6 LESPPPYRPDEFKPNHYAPSN---DIYGGEMHV--------------------RPMLSQP 42
Query: 171 TYSEKVEEYNLRYSYMKSWAGLLRILGVVELLLGAGVFACVTAYIHKDSEW-YNLFGYS- 228
YS E+ L + S G++RIL ++ +++ +FACV + + D + +L G S
Sbjct: 43 AYSFYPEDEILHFYKWTSPPGVIRILSMLIIVMCIAIFACVASTLAWDRGYGTSLLGGSV 102
Query: 229 -QPYGMGGVGGLGSMYG-----GYYYTGPKTP-----FVLVVAGLAWITTIIILVLGMSM 277
PYG G G GS YG GY Y G P F+L +A +I ++I V +
Sbjct: 103 GYPYGGSGFGSYGSGYGYGYGYGYGYGGYTDPRAAKGFMLAMAAFCFIAALVIFVTSV-- 160
Query: 278 YYRTILLDSNWWPLTEFGINVALFILYMAAAIVYVNDTNRGGLCYYPLFNTPVNAV---- 333
R+ + + + L+ ++ L I+ A IVY+ N L+ + + A+
Sbjct: 161 -IRSEMSRTRRYYLSVIIVSAILGIMVFIATIVYIMGVNPTAQSSGSLYGSQIYALCNQF 219
Query: 334 ----------------FCRVEGGQIAAMIFLFVTMIVYLISALVCLKLWR 367
+C V+ + A++ F+ ++ + + +K R
Sbjct: 220 YTPAATGLYVDQYLYHYCVVDPQEAIAIVLGFMIIVAFALIIFFAVKTRR 269
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 42.7 bits (99), Expect = 7e-04
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 364 KLWRHEAARRHR---EYMEQQEIN-EPSLSSKRKMCEMATSGDRQRDSEVNFKELRTAKM 419
K+WR E+ R H +Y + Q + + SL + + C++++ + FK +
Sbjct: 966 KIWRCESNRSHTTIAKYAQYQASSFQESLRAGMQWCDLSSL----QPPPPGFKRFSHLSL 1021
Query: 420 KPELLSGHIPPRPANFFVFLVEMGFHRVSQDDLDLLTS 457
H+P P NF +F VE GFH V Q L+LLTS
Sbjct: 1022 PNSWNYRHLPSCPTNFCIF-VETGFHHVGQACLELLTS 1058
>gi|38569495 ELL associated factor 1 [Homo sapiens]
Length = 268
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 42 SADPLPPPPLPLQ----PPFGPDFYSSDTEEPAIAPDLKPVRRF------VPDSWKNFFR 91
S P PPPP+P + PP GP S + P+ P L ++R + + +
Sbjct: 134 SQPPPPPPPMPFRAPTKPPVGPKT-SPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSSG 192
Query: 92 GKKKDPEWDKPVSDIRYISDGVECSPPASPARPNHRSPLNS 132
D E SD S G E + PASP +P+H+ P NS
Sbjct: 193 SSSSDSE-SSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNS 232
>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
Length = 440
Score = 39.7 bits (91), Expect = 0.006
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 428 IPPRPANFFVFLVEMGFHRVSQDDLDLLTS 457
+PP ANF++FLVE GFH V+ L+LL S
Sbjct: 398 VPPYLANFYIFLVETGFHHVAHAGLELLIS 427
>gi|7705755 plasmolipin [Homo sapiens]
Length = 182
Score = 37.7 bits (86), Expect = 0.022
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 247 YYTGPKTPFVLVVAGLAWITTIIILVLGMSMYYRTILLDSNWWPLTEFGINVALFILYMA 306
Y+ P +V+ VA W+ TI++ L + + + + WPL N++ +LY+
Sbjct: 60 YHLYPAYGWVMFVAVFLWLVTIVLFNLYLFQLHMKLYMVP--WPLVLMIFNISATVLYIT 117
Query: 307 AAIVYVNDTNRGGLCYYPLFNTPVNAVFCRVEGGQIAAMIFLFVTMIVYLISALVCLKLW 366
A I C + T + R + AA F + MI Y +SA + W
Sbjct: 118 AFIA----------CSAAVDLTSLRGT--RPYNQRAAASFFACLVMIAYGVSAFFSYQAW 165
Query: 367 R 367
R
Sbjct: 166 R 166
>gi|5902148 uroplakin 1A [Homo sapiens]
Length = 258
Score = 37.4 bits (85), Expect = 0.029
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 24/152 (15%)
Query: 258 VVAGLAWITTIIILVLGMSMYYRTILLDSNW---WPLTEFGINVALFILYMAAAIVYVND 314
VV GL + IIIL+ G+S++ TI + ++ +PL G++ + A ++
Sbjct: 15 VVVGLLVVGNIIILLSGLSLFAETIWVTADQYRVYPL--MGVSGKDDVFAGAWIAIFC-- 70
Query: 315 TNRGGLCYYPLFNTPVNAVFCRVEGGQIAAMIFLFVTMIVYLISALVCLKLWRHEAARRH 374
G ++ + + V A CR + + +L + +IVY+ C+ + H
Sbjct: 71 ----GFSFFMVASFGVGAALCR---RRSMVLTYLVLMLIVYIFECASCI------TSYTH 117
Query: 375 REYMEQQEINEPSLSSKRKMCEMATSGDRQRD 406
R+YM ++ PSL +K+ + + D+ ++
Sbjct: 118 RDYM----VSNPSLITKQMLTFYSADTDQGQE 145
>gi|65301122 MARVEL domain containing 3 isoform 1 [Homo sapiens]
Length = 410
Score = 37.4 bits (85), Expect = 0.029
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 37/209 (17%)
Query: 195 ILGVVELLLGAGVFACVTAYIHKDSEWYNLFGYSQPYGMGGVGGLGSMYGGYY------- 247
++ +VE++L V C+ A ++ L G+S + GG G G+ Y +
Sbjct: 200 VVQIVEVVLNGMVLICIVA------SYFVLAGFSASFSSGG--GFGNNYYSPFEGTELEQ 251
Query: 248 -------YTGPKTPFVLVVAGLAWITTIIILVLGMSMY---YRTILLDSNWWPLTEFGIN 297
YT ++P L+ G+A + +L +G+ + RT+L S W LTE +
Sbjct: 252 VRQLDQQYTILRSP--LIYGGVAVSLGLGVLTMGVLLQGAKSRTML--SGKWLLTEAAFS 307
Query: 298 VALFILYMAAAIVY------VNDTNRGGLCYYPLFNTPVNAVFCRVEGGQIAAMIFLFVT 351
+ + Y VY +N T+ + + C++ G AA F +
Sbjct: 308 LLAAVGYCTGIGVYLHVALQINSTDTCKTRERLYARKGLTWMDCQLAGTDGAAATFACLL 367
Query: 352 MIVYLISALVCLKLWRHEAARRHREYMEQ 380
+I+Y S ++ L+ +R + +R++ EQ
Sbjct: 368 VIMYGASVVLALRSYREQ--KRYKGSREQ 394
>gi|32130536 CKLF-like MARVEL transmembrane domain containing 8
[Homo sapiens]
Length = 173
Score = 37.0 bits (84), Expect = 0.037
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 244 GGYYYTGPKTPFVLVVAGLAWITTIIILVLGMSMYYRTILLDSNWWPLTEFGINVALFIL 303
G Y+ P +V+ VA W+ T+ L++ ++M Y I W N + F+L
Sbjct: 61 GTEYFRVPAFGWVMFVAVFYWVLTVFFLIIYITMTYTRI--PQVPWTTVGLCFNGSAFVL 118
Query: 304 YMAAAIV 310
Y++AA+V
Sbjct: 119 YLSAAVV 125
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 36.6 bits (83), Expect = 0.049
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 3 NDGRSRNRDRRYDEVPSDLPYQDTTIRT--HPILHDSERAVSADPLPPPPLPLQPPFGPD 60
+DG R +R E P+ PY T+ + P L + A + P P PPLPL PP P
Sbjct: 2169 DDGTGREAPKR--EAPA-FPYPTATLASGPQPFLPPGKEATT--PTPEPPLPLLPPPPPS 2223
Query: 61 FYSSDTEEPAIAPD 74
E P +P+
Sbjct: 2224 EEEGPEEPPKASPE 2237
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 36.6 bits (83), Expect = 0.049
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 3 NDGRSRNRDRRYDEVPSDLPYQDTTIRT--HPILHDSERAVSADPLPPPPLPLQPPFGPD 60
+DG R +R E P+ PY T+ + P L + A + P P PPLPL PP P
Sbjct: 2085 DDGTGREAPKR--EAPA-FPYPTATLASGPQPFLPPGKEATT--PTPEPPLPLLPPPPPS 2139
Query: 61 FYSSDTEEPAIAPD 74
E P +P+
Sbjct: 2140 EEEGPEEPPKASPE 2153
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 36.6 bits (83), Expect = 0.049
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 3 NDGRSRNRDRRYDEVPSDLPYQDTTIRT--HPILHDSERAVSADPLPPPPLPLQPPFGPD 60
+DG R +R E P+ PY T+ + P L + A + P P PPLPL PP P
Sbjct: 2085 DDGTGREAPKR--EAPA-FPYPTATLASGPQPFLPPGKEATT--PTPEPPLPLLPPPPPS 2139
Query: 61 FYSSDTEEPAIAPD 74
E P +P+
Sbjct: 2140 EEEGPEEPPKASPE 2153
>gi|187761324 shootin1 isoform a [Homo sapiens]
Length = 631
Score = 35.4 bits (80), Expect = 0.11
Identities = 40/170 (23%), Positives = 60/170 (35%), Gaps = 35/170 (20%)
Query: 15 DEVPSDLPYQDTTIRTHPILHD----------SERAVSADPLPPPPLPLQPPFGPDFYSS 64
D+ +L YQ++ + + H SE +V P PPPPLP PP
Sbjct: 316 DKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPP-------- 367
Query: 65 DTEEPAIAPDLKPVRRFVPDSWKNFFRGKKKDPEWDKPVSDIR---------YISDGVEC 115
I + +R+ S + K PE + V+D++ I GV
Sbjct: 368 ----NPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKGVHL 423
Query: 116 SPPASPARPNHR----SPLNSCKDPYGGSEGTFSSRKEADAVFPRDPYGS 161
P ARP + S D G GT + + ++ DP S
Sbjct: 424 RPVNQTARPKTKPESSKGCESAVDELKGILGTLNKSTSSRSLKSLDPENS 473
>gi|18426913 drebrin 1 isoform b [Homo sapiens]
Length = 651
Score = 34.7 bits (78), Expect = 0.18
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 17 VPSDLPYQDTTIRTHPILHDSERAVSA------DPLPPPPLPLQPPFGPDFYSSDTEEPA 70
+P+ P +T T P+ ERA+ PLPPPP P Q +T+EP+
Sbjct: 335 IPTRSPSDSSTAST-PVAEQIERALDEVTSSQPPPLPPPPPPAQ----------ETQEPS 383
Query: 71 IAPDLKPVRRFVPDSW 86
D + R P +W
Sbjct: 384 PILDSEETRAAAPQAW 399
>gi|18426915 drebrin 1 isoform a [Homo sapiens]
Length = 649
Score = 34.7 bits (78), Expect = 0.18
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 17 VPSDLPYQDTTIRTHPILHDSERAVSA------DPLPPPPLPLQPPFGPDFYSSDTEEPA 70
+P+ P +T T P+ ERA+ PLPPPP P Q +T+EP+
Sbjct: 333 IPTRSPSDSSTAST-PVAEQIERALDEVTSSQPPPLPPPPPPAQ----------ETQEPS 381
Query: 71 IAPDLKPVRRFVPDSW 86
D + R P +W
Sbjct: 382 PILDSEETRAAAPQAW 397
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 34.3 bits (77), Expect = 0.24
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 436 FVFLVEMGFHRVSQDDLDLLTS 457
FVFLVEMGFH V Q L+LL S
Sbjct: 33 FVFLVEMGFHHVGQAGLELLIS 54
>gi|4758222 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1B isoform a [Homo sapiens]
Length = 629
Score = 33.9 bits (76), Expect = 0.32
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 45 PLPPPPLPLQPPFGPDFYSSDTEEPAIAPDLKPVRRFVPDSWKNFFRGKKKDPEWDKP-- 102
P PP PL+P G D + PA A L +P + + G+ P P
Sbjct: 505 PQVPPSQPLRPWAGGDVPHKTHQAPASASSLPGTGAQLPPQPR--YLGRPPSPTSPPPPE 562
Query: 103 VSDIRYISDGVECSPPASPARPNH 126
+ D+ + +CSPP P H
Sbjct: 563 LMDVSLVGGPADCSPPHPAPAPQH 586
>gi|5922001 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1B isoform c [Homo sapiens]
Length = 601
Score = 33.9 bits (76), Expect = 0.32
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 45 PLPPPPLPLQPPFGPDFYSSDTEEPAIAPDLKPVRRFVPDSWKNFFRGKKKDPEWDKP-- 102
P PP PL+P G D + PA A L +P + + G+ P P
Sbjct: 477 PQVPPSQPLRPWAGGDVPHKTHQAPASASSLPGTGAQLPPQPR--YLGRPPSPTSPPPPE 534
Query: 103 VSDIRYISDGVECSPPASPARPNH 126
+ D+ + +CSPP P H
Sbjct: 535 LMDVSLVGGPADCSPPHPAPAPQH 558
>gi|5921999 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1B isoform b [Homo sapiens]
Length = 589
Score = 33.9 bits (76), Expect = 0.32
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 45 PLPPPPLPLQPPFGPDFYSSDTEEPAIAPDLKPVRRFVPDSWKNFFRGKKKDPEWDKP-- 102
P PP PL+P G D + PA A L +P + + G+ P P
Sbjct: 465 PQVPPSQPLRPWAGGDVPHKTHQAPASASSLPGTGAQLPPQPR--YLGRPPSPTSPPPPE 522
Query: 103 VSDIRYISDGVECSPPASPARPNH 126
+ D+ + +CSPP P H
Sbjct: 523 LMDVSLVGGPADCSPPHPAPAPQH 546
>gi|61744475 solute carrier family 3, member 2 isoform a [Homo
sapiens]
Length = 661
Score = 33.9 bits (76), Expect = 0.32
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 396 EMATSGDRQRDSEVNFKELRTA-----KMKPELLSGHIPPRPANFFVFLVEMGFHRVSQD 450
E+ SGD + N + + T + +LL+ PP A+ + E GFH VSQ
Sbjct: 50 ELLASGDPLPSASQNAEMIETGSDCVTQAGLQLLASSDPPALASKNAEVTETGFHHVSQA 109
Query: 451 DLDLLTS 457
D++ LTS
Sbjct: 110 DIEFLTS 116
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 33.9 bits (76), Expect = 0.32
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 47 PPPPLPLQPPFGPDFYSSDTEEPAIAPD 74
PPPP P PP P F+ ++TE+P ++ D
Sbjct: 5 PPPPPPPGPPPPPTFHQANTEQPKLSRD 32
Score = 30.0 bits (66), Expect = 4.6
Identities = 40/161 (24%), Positives = 57/161 (35%), Gaps = 30/161 (18%)
Query: 47 PPPPLPLQPPFGPDFYSSDTEEPAIAPDLK------------PVRRFVP----DSWKNFF 90
PPPP QPP P+ SS T E AP+L PVR P + +
Sbjct: 250 PPPPPYRQPPGVPNGPSSPTNES--APELPQRHNSLHRKTPGPVRGLAPPPPTSASPSLL 307
Query: 91 RGKKKDPEWDKPVSDIR------YISDGVECSPPASPARPNHRSPLNSCKDPYGGSEGTF 144
+ P D P I +G +PP P H S + P G
Sbjct: 308 SNRPPPPARDPPSRGAAPPPPPPVIRNGARDAPPPPPPYRMHGS-----EPPSRGKPPPP 362
Query: 145 SSRKEADAVFPRDPYGSLDRHTQTVRTYSEKVEEYNLRYSY 185
SR A P P + H ++ T ++++ +YS+
Sbjct: 363 PSRTPAGPP-PPPPPPLRNGHRDSITTVRSFLDDFESKYSF 402
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 33.5 bits (75), Expect = 0.41
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 5 GRSRNRDRRYDEVPSDLP-YQDTTIRTHPILHDSERAVSADPLPPPPLPLQPPFGPDFYS 63
G + +++ ++PS P + P S +SA P PPPP P PP P
Sbjct: 2364 GETFGQEKPASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPP---- 2419
Query: 64 SDTEEPAIAPDLKPVRRFVP 83
P + P P +P
Sbjct: 2420 PPPPPPPLPPPTSPKPTILP 2439
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 33.5 bits (75), Expect = 0.41
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 5 GRSRNRDRRYDEVPSDLP-YQDTTIRTHPILHDSERAVSADPLPPPPLPLQPPFGPDFYS 63
G + +++ ++PS P + P S +SA P PPPP P PP P
Sbjct: 2364 GETFGQEKPASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPP---- 2419
Query: 64 SDTEEPAIAPDLKPVRRFVP 83
P + P P +P
Sbjct: 2420 PPPPPPPLPPPTSPKPTILP 2439
>gi|16418397 MAL2 proteolipid protein [Homo sapiens]
Length = 176
Score = 33.1 bits (74), Expect = 0.54
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 270 ILVLGMSMYYRTILLDSNWWPLTEFGINVALFILYMAAAIVYVNDTNRGGL-CYYPLFNT 328
+L LGM + +D+NW +F + +F+ Y A ++ T+ L C +
Sbjct: 80 LLFLGMFLSGMVAQIDANW-NFLDFAYHFTVFVFYFGAFLLEAAATSLHDLHCNTTITGQ 138
Query: 329 PVNAVFCRVEGGQIAAMIFLFVTMIVYLISALVCLKLWR 367
P+ + +AA IF F+T Y S + L+ WR
Sbjct: 139 PL--LSDNQYNINVAASIFAFMTTACYGCSLGLALRRWR 175
>gi|27734961 hypothetical protein LOC160298 [Homo sapiens]
Length = 333
Score = 33.1 bits (74), Expect = 0.54
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 21/115 (18%)
Query: 38 ERAVSADPLPP------PPLPLQPPFGPDFYSSDTEE------PAIAPDLKPVRRFVPDS 85
++ ++ DPLP P L + PP P S+DT E P AP P + P+
Sbjct: 211 QKPLTKDPLPHGANWVRPNLSIMPPLAPTSASADTTEAADVPPPVPAPPTPPPQE-GPED 269
Query: 86 WKNFFRGKKKDPEWDKPVSDIRYISDGVECSPPASPARPNHRSPLNSCKDPYGGS 140
F K ++P W P + +S+ SP + P P +DP G S
Sbjct: 270 KPTRFSYKGRNPFWRGP----QILSENWLFSPRSPPPGAQGGGP----RDPDGHS 316
>gi|62953127 polyhomeotic 1-like [Homo sapiens]
Length = 1004
Score = 32.7 bits (73), Expect = 0.70
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 18 PSDLPYQDTTIRTHPILHDSERAVSADPLPPPPLPLQ--PPFGP 59
PS Q T+ P+L S ++ D P PP+P+Q PP P
Sbjct: 461 PSQSQQQAQTLVVQPMLQSSPLSLPPDAAPKPPIPIQSKPPVAP 504
>gi|148727368 bromodomain and PHD finger containing, 3 [Homo
sapiens]
Length = 1205
Score = 32.7 bits (73), Expect = 0.70
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 7 SRNRDRRYDEVPSDLPYQDTTIRTHPILHDSERAVSADPLPPPPLPLQPPFGPDFYSSDT 66
S N+ E+P+ P D + + + E D PP P P GP S+
Sbjct: 792 SLNKTVSNGELPAG-PQGDAAVLEQALQEEPEDDGDRDDSKLPPPPTLEPTGPAPSLSEQ 850
Query: 67 EEPAIAPDLKPVRRFVPDSWKNFFRGKKKDPE 98
E P P LKP+ P S F + +K + +
Sbjct: 851 ESPPEPPTLKPINDSKPPS--RFLKPRKVEED 880
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 32.7 bits (73), Expect = 0.70
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 20/92 (21%)
Query: 45 PLPPPPLPLQPPFG-------PDFYSSDTEEPAIAPDLKPVRRFVPDSWKNFFRGKKKDP 97
P PPPLPL PP G P + D +EP P P+ + S P
Sbjct: 258 PPIPPPLPLLPPCGYPGLKAEPASPAQDAQEPPAPP--PPLPPYASCS-----------P 304
Query: 98 EWDKPVSDIRYISDGVECSPPASPARPNHRSP 129
P + ++ E PP P P+ ++P
Sbjct: 305 RASLPAPPLPGVNSSSETPPPLPPKSPSFQAP 336
Score = 32.0 bits (71), Expect = 1.2
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 45 PLPPPPLPLQPPFGPDFYSSD-TEEPAIAP-DLKPVRRFVPDSWKNFFRGKKKDP----- 97
P PPPP P PP P SD +P +AP L P+ +P + G K +P
Sbjct: 225 PPPPPPPPTPPPLPPASVLSDKAVKPQLAPLHLPPIPPPLPLLPPCGYPGLKAEPASPAQ 284
Query: 98 EWDKPVSDIRYISDGVECSPPAS-PARP 124
+ +P + + CSP AS PA P
Sbjct: 285 DAQEPPAPPPPLPPYASCSPRASLPAPP 312
>gi|50511340 shootin1 isoform b [Homo sapiens]
Length = 456
Score = 32.7 bits (73), Expect = 0.70
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 31/129 (24%)
Query: 15 DEVPSDLPYQDTTIRTHPILHD----------SERAVSADPLPPPPLPLQPPFGPDFYSS 64
D+ +L YQ++ + + H SE +V P PPPPLP PP
Sbjct: 316 DKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPP-------- 367
Query: 65 DTEEPAIAPDLKPVRRFVPDSWKNFFRGKKKDPEWDKPVSDIR---------YISDGVEC 115
I + +R+ S + K PE + V+D++ I GV
Sbjct: 368 ----NPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKGVHL 423
Query: 116 SPPASPARP 124
P ARP
Sbjct: 424 RPVNQTARP 432
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,235,962
Number of Sequences: 37866
Number of extensions: 1047764
Number of successful extensions: 6543
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 6181
Number of HSP's gapped (non-prelim): 365
length of query: 457
length of database: 18,247,518
effective HSP length: 106
effective length of query: 351
effective length of database: 14,233,722
effective search space: 4996036422
effective search space used: 4996036422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.