Guide to the Human Genome
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Name: UPK1A Sequence: fasta or formatted (258aa) NCBI GI: 5902148
Description:

uroplakin 1A

Referenced in:

Integrins
Kidney

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         22           4
 C cysteine            3.9         10           2
 D aspartate           3.9         10           2
 E glutamate           4.3         11           2
 F phenylalanine       7.0         18           2
 G glycine             7.8         20           1
 H histidine           1.6          4           1
 I isoleucine          6.6         17           3
 K lysine              1.6          4           1
 L leucine             9.3         24           2
 M methionine          5.4         14           1
 N asparagine          1.9          5           1
 P proline             3.9         10           2
 Q glutamine           1.9          5           1
 R arginine            4.3         11           3
 S serine              6.6         17           1
 T threonine           6.6         17           1
 V valine              7.8         20           3
 W tryptophan          3.1          8           1
 Y tyrosine            4.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   uroplakin 1A 
UPK1B                 0.365   uroplakin 1B 
TSPAN18               0.129   tetraspanin 18 isoform 2 
TSPAN18               0.121   tetraspanin 18 isoform 1 
TSPAN1                0.076   tetraspan 1 
TSPAN9                0.066   tetraspanin 9 
TSPAN4                0.064   tetraspanin 4 isoform a 
TSPAN4                0.064   tetraspanin 4 isoform a 
TSPAN4                0.064   tetraspanin 4 isoform a 
TSPAN4                0.064   tetraspanin 4 isoform a 
TSPAN4                0.064   tetraspanin 4 isoform a 
TSPAN4                0.064   tetraspanin 4 isoform a 
TSPAN11               0.062   tetraspanin 11 
CD151                 0.055   CD151 antigen 
CD151                 0.055   CD151 antigen 
CD151                 0.055   CD151 antigen 
CD151                 0.055   CD151 antigen 
TSPAN3                0.053   transmembrane 4 superfamily member 8 isoform 1 
CD63                  0.049   CD63 antigen isoform B 
CD63                  0.049   CD63 antigen isoform A 
TSPAN4                0.047   tetraspanin 4 isoform b 
CD9                   0.043   CD9 antigen 
CD82                  0.041   CD82 antigen isoform 1 
TSPAN17               0.037   transmembrane 4 superfamily member 17 isoform b [Hom...
TSPAN17               0.037   transmembrane 4 superfamily member 17 isoform a [Hom...
TSPAN17               0.037   transmembrane 4 superfamily member 17 isoform c [Hom...
CD37                  0.033   CD37 antigen isoform A 
TSPAN14               0.031   tetraspanin 14 isoform 1 
TSPAN6                0.031   transmembrane 4 superfamily member 6 
TSPAN12               0.027   transmembrane 4 superfamily member 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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