Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 216548193

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|216548193 RAD54-like protein [Homo sapiens]
         (747 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|216548193 RAD54-like protein [Homo sapiens]                       1506   0.0  
gi|216548186 RAD54-like protein [Homo sapiens]                       1506   0.0  
gi|6912622 RAD54 homolog B [Homo sapiens]                             483   e-136
gi|4557565 excision repair cross-complementing rodent repair def...   276   4e-74
gi|58331268 excision repair protein ERCC6-like [Homo sapiens]         251   2e-66
gi|168823443 RAD54-like 2 [Homo sapiens]                              246   4e-65
gi|58219008 RAD26L hypothetical protein [Homo sapiens]                236   4e-62
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto...   234   2e-61
gi|118421089 chromodomain helicase DNA binding protein 2 isoform...   228   2e-59
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r...   226   6e-59
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...   224   3e-58
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa...   221   1e-57
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re...   221   2e-57
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa...   220   3e-57
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa...   220   4e-57
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ...   218   2e-56
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ...   218   2e-56
gi|158420731 chromodomain helicase DNA binding protein 3 isoform...   218   2e-56
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s...   217   3e-56
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re...   217   3e-56
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa...   214   2e-55
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa...   212   1e-54
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r...   211   2e-54
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r...   211   2e-54
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re...   211   2e-54
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...   211   2e-54
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...   211   2e-54
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r...   209   6e-54
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r...   209   6e-54
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r...   209   6e-54

>gi|216548193 RAD54-like protein [Homo sapiens]
          Length = 747

 Score = 1506 bits (3900), Expect = 0.0
 Identities = 747/747 (100%), Positives = 747/747 (100%)

Query: 1   MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTN 60
           MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTN
Sbjct: 1   MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTN 60

Query: 61  QPPCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVL 120
           QPPCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVL
Sbjct: 61  QPPCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVL 120

Query: 121 YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI 180
           YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI
Sbjct: 121 YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI 180

Query: 181 MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP 240
           MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP
Sbjct: 181 MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP 240

Query: 241 LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR 300
           LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR
Sbjct: 241 LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR 300

Query: 301 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP 360
           LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP
Sbjct: 301 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP 360

Query: 361 ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 420
           ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ
Sbjct: 361 ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 420

Query: 421 TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL 480
           TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL
Sbjct: 421 TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL 480

Query: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 540
           FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY
Sbjct: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 540

Query: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600
           VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND
Sbjct: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600

Query: 601 EQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGE 660
           EQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGE
Sbjct: 601 EQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGE 660

Query: 661 LKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVL 720
           LKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVL
Sbjct: 661 LKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVL 720

Query: 721 QAAWDAASTAITFVFHQRSHEEQRGLR 747
           QAAWDAASTAITFVFHQRSHEEQRGLR
Sbjct: 721 QAAWDAASTAITFVFHQRSHEEQRGLR 747


>gi|216548186 RAD54-like protein [Homo sapiens]
          Length = 747

 Score = 1506 bits (3900), Expect = 0.0
 Identities = 747/747 (100%), Positives = 747/747 (100%)

Query: 1   MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTN 60
           MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTN
Sbjct: 1   MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTN 60

Query: 61  QPPCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVL 120
           QPPCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVL
Sbjct: 61  QPPCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVL 120

Query: 121 YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI 180
           YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI
Sbjct: 121 YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI 180

Query: 181 MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP 240
           MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP
Sbjct: 181 MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP 240

Query: 241 LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR 300
           LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR
Sbjct: 241 LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR 300

Query: 301 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP 360
           LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP
Sbjct: 301 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP 360

Query: 361 ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 420
           ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ
Sbjct: 361 ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 420

Query: 421 TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL 480
           TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL
Sbjct: 421 TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL 480

Query: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 540
           FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY
Sbjct: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 540

Query: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600
           VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND
Sbjct: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600

Query: 601 EQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGE 660
           EQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGE
Sbjct: 601 EQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGE 660

Query: 661 LKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVL 720
           LKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVL
Sbjct: 661 LKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVL 720

Query: 721 QAAWDAASTAITFVFHQRSHEEQRGLR 747
           QAAWDAASTAITFVFHQRSHEEQRGLR
Sbjct: 721 QAAWDAASTAITFVFHQRSHEEQRGLR 747


>gi|6912622 RAD54 homolog B [Homo sapiens]
          Length = 910

 Score =  483 bits (1244), Expect = e-136
 Identities = 277/589 (47%), Positives = 372/589 (63%), Gaps = 31/589 (5%)

Query: 110 HDPLEKDALVLYEPPPLSAHDQLKLDKEKLP-VHVVVDPILSKVLRPHQREGVKFLWECV 168
           HDP   ++LV+  P     + Q   +K   P V VV+DP L   LRPHQ+EG+ FL+ECV
Sbjct: 255 HDPYTPNSLVMPRP---DKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECV 311

Query: 169 TSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC-KPEIDKAVVVSPSSLVKNWY 227
              R+ G  G I+ADEMGLGKTLQCI+L+WTL  Q P   KP I K ++V+P SLV NW 
Sbjct: 312 MGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWK 371

Query: 228 NEVGKWLGG-RIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQ 286
            E  KWLG  RI+   +D       D K+E F+      +   +LIISYE     +  ++
Sbjct: 372 KEFQKWLGSERIKIFTVDQ------DHKVEEFIKS----IFYSVLIISYEMLLRSLDQIK 421

Query: 287 KGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGI 346
                L+ICDEGHRLKNS  +T  AL SL+  +R++++GTPIQNDL E+F+L+ FVN GI
Sbjct: 422 NIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGI 481

Query: 347 LGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPV 406
           LG+   ++K +E PI+  R+ +ASE +++LGE R  ELT +    ++RRT +I++KYLP 
Sbjct: 482 LGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPP 541

Query: 407 KIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSS-LSSITSLKKLCNHPALIYD 465
           KIE VV CR   LQ ELY++ L  ++     L+G +  S  L  I +LKKLCNHP L+++
Sbjct: 542 KIENVVFCRPGALQIELYRKLLN-SQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFN 600

Query: 466 KCVEEEDG-----------FVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRS-RSS 513
              E+E             + G L +FP  Y+      + SGK+ VL  +LAV    R +
Sbjct: 601 SIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPT 660

Query: 514 DKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS 573
           +KVVLVSNYTQTL++ +++C+   Y Y RLDG   I +R ++V+ FNS  S  F+F+LSS
Sbjct: 661 EKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSS 720

Query: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQ 633
           KAGG GLNLIG + L+++D DWNPA D QAM+RVWRDGQK   +IYRLL+ GTIEEKI+Q
Sbjct: 721 KAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQ 780

Query: 634 RQSHKKALSSCVVDEEQDVER-HFSLGELKELFILDEASLSDTHDRLHC 681
           RQ  K+ L   VVD  +  E   FS+ ELK LF L E+S   THD L C
Sbjct: 781 RQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTLHESSDCVTHDLLDC 829


>gi|4557565 excision repair cross-complementing rodent repair
            deficiency, complementation group 6 [Homo sapiens]
          Length = 1493

 Score =  276 bits (707), Expect = 4e-74
 Identities = 193/548 (35%), Positives = 285/548 (52%), Gaps = 48/548 (8%)

Query: 145  VDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL---- 200
            V   L K L  +Q+ GV++LWE    +      G I+ DEMGLGKT+Q I  +  L    
Sbjct: 499  VPGFLFKKLFKYQQTGVRWLWELHCQQA-----GGILGDEMGLGKTIQIIAFLAGLSYSK 553

Query: 201  --LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGF 258
               R S      +   V+V P++++  W  E   W       +  + GS     +KL   
Sbjct: 554  IRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLI-- 611

Query: 259  MNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS 318
               R       ILI SY   RL    + +     VI DEGH+++N       A     T 
Sbjct: 612  ---RDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTP 668

Query: 319  RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGE 378
             R+++SG+P+QN+L E +SL  F+  G LGT   F + F +PI  G  + AS    +   
Sbjct: 669  HRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAY 728

Query: 379  ERLRELTSIVNRCLIRRT-SDI-LSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEE 436
            +    L   +N  L+RR  SD+ +S  LP K EQV+ CRLT  Q ++Y+ F+  +K    
Sbjct: 729  KCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFV-DSKEVYR 787

Query: 437  LLEGKMSVSSLSSITSLKKLCNHPALIYDKCVE---------EEDGFVGALDLFPPGYSS 487
            +L G+M +   S + +L+K+CNHP L                EED F         GY  
Sbjct: 788  ILNGEMQI--FSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQF---------GYWK 836

Query: 488  KALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTM 547
            +      SGKM+V++ +L +   +   +V+L S   Q LD+ E   RA++Y Y+++DGT 
Sbjct: 837  R------SGKMIVVESLLKIWH-KQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTT 889

Query: 548  SIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARV 607
            +I  R  ++ R+N  +S  FVF+L+++ GG G+NL GANR+V++DPDWNP+ D QA  R 
Sbjct: 890  TIASRQPLITRYNEDTSI-FVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERA 948

Query: 608  WRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFIL 667
            WR GQKK   +YRLL+AGTIEEKI+ RQ  K+ L++ V+ + +   R F   +L ELF L
Sbjct: 949  WRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQ-RRFFKSNDLYELFTL 1007

Query: 668  DEASLSDT 675
                 S +
Sbjct: 1008 TSPDASQS 1015


>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
          Length = 1250

 Score =  251 bits (640), Expect = 2e-66
 Identities = 182/570 (31%), Positives = 294/570 (51%), Gaps = 58/570 (10%)

Query: 149 LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECK 208
           L   L  HQ+EG+ FL+         G  G I+AD+MGLGKT+Q I  +  +   S    
Sbjct: 92  LHNQLFEHQKEGIAFLYSLYRD----GRKGGILADDMGLGKTVQIIAFLSGMFDASL--- 144

Query: 209 PEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSS 268
             ++  +++ P++L+  W  E  KW  G ++     G SKDE  + L     + G  +++
Sbjct: 145 --VNHVLLIMPTNLINTWVKEFIKWTPG-MRVKTFHGPSKDERTRNLNRIQQRNGVIITT 201

Query: 269 -PILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTP 327
             +LI +++      G  Q+     VI DE H++K S  ++     ++  S R+L++GTP
Sbjct: 202 YQMLINNWQQLSSFRG--QEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTP 259

Query: 328 IQNDLLEYFSLVHFVNSG-ILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTS 386
           IQN+L E +SL  F   G +LGT   FK  +E PI + R+  A+  ++ LG +    L +
Sbjct: 260 IQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMA 319

Query: 387 IVNRCLIRRTSDILSKY------------------------LPVKIEQVVCCRLTPLQTE 422
           I+    +RRT + + K                         L  K + ++  RL PLQ E
Sbjct: 320 IIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEE 379

Query: 423 LYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCV--------EEEDGF 474
           +Y++F+      E L+E +   S L+ +  LKKLC+HP L+  +            +DG 
Sbjct: 380 IYRKFVSLDHIKELLMETR---SPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGN 436

Query: 475 VGALDLFPPGYSSKALEPQL---SGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEK 531
            G  D     +  +  +  L   SGKM+ L  +L   R      +V  S   Q L++ E+
Sbjct: 437 EGE-DSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVF-SQSRQILNIIER 494

Query: 532 LCRARRYLYVRLDGTMS-IKKRAKVVERFNSPSSPDF-VFMLSSKAGGCGLNLIGANRLV 589
           L + R +  +R+DGT++ + +R K +  F    + D+ VF+L+++ GG GL L  A R+V
Sbjct: 495 LLKNRHFKTLRIDGTVTHLLEREKRINLFQQ--NKDYSVFLLTTQVGGVGLTLTAATRVV 552

Query: 590 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEE 649
           +FDP WNPA D QA+ RV+R GQK+   +YRL++ GT+EEKI++RQ  K +L      E+
Sbjct: 553 IFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEK 612

Query: 650 QDVERHFSLGELKELFILDEASLSDTHDRL 679
           ++  R+FS  EL+ELF +++   S T  +L
Sbjct: 613 KNPFRYFSKQELRELFTIEDLQNSVTQLQL 642


>gi|168823443 RAD54-like 2 [Homo sapiens]
          Length = 1467

 Score =  246 bits (629), Expect = 4e-65
 Identities = 186/642 (28%), Positives = 293/642 (45%), Gaps = 145/642 (22%)

Query: 142 HVVVDPILSKVLRPHQREGVKFLW----ECVTSRRIPGSHGCIMADEMGLGKTLQCITLM 197
           +V + P L++ ++PHQ  G++FL+    E +   +     GCI+A  MGLGKTLQ I+ +
Sbjct: 260 NVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFI 319

Query: 198 WTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQ---- 253
             L R +P         + + P + ++NW  E   WL     P A+   +K E  Q    
Sbjct: 320 DVLFRHTPA-----KTVLAIVPVNTLQNWLAEFNMWLP---PPEALPADNKPEEVQPRFF 371

Query: 254 KLEGFMNQRGARVSSP-----------ILIISYETFRL-------------------HVG 283
           K+    ++     S             +L++ YE +RL                   H  
Sbjct: 372 KVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPV 431

Query: 284 VLQ-------------------KGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLIS 324
           ++                    +    +VICDEGHR+KN +  T QAL ++ + RRV+++
Sbjct: 432 IIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLT 491

Query: 325 GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLREL 384
           G P+QN+L+EY+ +V FV    LGT  EF   FE PIL G+   ++  D +L   R   L
Sbjct: 492 GYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVL 551

Query: 385 TSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSV 444
            S++   + RR   +L  +LP K E V+  RL+ +Q +LY +F+ + +       G + +
Sbjct: 552 HSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCGS--SGWLGL 609

Query: 445 SSLSSITSLKKLCNHPALIYDKCVE-----------EEDGFVGALDLFPP-GYSSKALEP 492
           + L +     K+ NHP ++Y+   +           EE G  G     PP G   K  + 
Sbjct: 610 NPLKAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGKGEDS 669

Query: 493 QLSGKM-----------------------------------------------LVLDYIL 505
            L+  M                                               +VL + L
Sbjct: 670 TLASSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHL 729

Query: 506 AVTRSRSSDKVVLVSNYTQTLDLFEKLCR------------------ARRYLYVRLDGTM 547
                +  DK+++ S    TL L E+                      R   Y RLDG+ 
Sbjct: 730 IEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGST 789

Query: 548 SIKKRAKVVERFNSPSS-PDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 606
              +R +++ +FN PS+   ++F+LS++AG  G+NLIGANR+V+FD  WNP +D QA+ R
Sbjct: 790 PAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCR 849

Query: 607 VWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648
           V+R GQKK CYIYRL++  T+E+KI+ RQ  K+ +S  VVD+
Sbjct: 850 VYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 891


>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
          Length = 712

 Score =  236 bits (603), Expect = 4e-62
 Identities = 169/566 (29%), Positives = 284/566 (50%), Gaps = 77/566 (13%)

Query: 149 LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLL------- 201
           +++ LR +QREG +FL+       I G  GCI+ D+MGLGKT+Q I+ +  +L       
Sbjct: 130 INRYLRDYQREGTRFLY----GHYIHGG-GCILGDDMGLGKTVQVISFLAAVLHKKGTRE 184

Query: 202 --------------RQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGS 247
                         ++ P         ++V+P S++ NW +E+  W  G  +   + G  
Sbjct: 185 DIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW--GYFRVTVLHGNR 242

Query: 248 KDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQ 307
           KD    +++    QR   ++    + +YET RL +  L       VI DE HR+KN + +
Sbjct: 243 KDNELIRVK----QRKCEIA----LTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKAR 294

Query: 308 TYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDA 367
             + + +L  + R+ ++GT +QN++ E + ++ +   G+LG+   FKK F  P+  G+  
Sbjct: 295 VTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRH 354

Query: 368 AASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRF 427
            A++ +   G + ++ L   ++   +RRT  ++   LP K +++V C LT  Q  +Y+  
Sbjct: 355 TATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTV 414

Query: 428 LRQAKPAEELLEGK------------------------MSVSSLSSITSLKKLCNHPALI 463
           L + +    +L+                          +    LS +T L+K+ NH AL+
Sbjct: 415 L-ETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALL 473

Query: 464 YDKCVEEE---------DGFVGALDLFPPGYSSKALE----PQLSGKMLVLDYILAVTRS 510
                 ++         D        F       A E    P+ SGKM VL  +L   R 
Sbjct: 474 QAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCR- 532

Query: 511 RSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFM 570
           ++ DKV+L S  T+ LD+ ++ C A    Y RLDG+   ++R K+V+ FNS    + + +
Sbjct: 533 KNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVN-ICL 591

Query: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEK 630
           +S+ AGG GLN +GAN +V+FDP WNPAND QA+ R +R GQ +   + RL+S GT+EE 
Sbjct: 592 VSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEI 651

Query: 631 IFQRQSHKKALSSCVVDEEQDVERHF 656
           ++ RQ +K+ L  CVV   ++ +R+F
Sbjct: 652 MYLRQIYKQQL-HCVVVGSENAKRYF 676


>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
            factor-associated, 170kDa [Homo sapiens]
          Length = 1849

 Score =  234 bits (597), Expect = 2e-61
 Identities = 180/584 (30%), Positives = 288/584 (49%), Gaps = 58/584 (9%)

Query: 130  DQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGK 189
            D  KL+  K+PV +  +      LR +Q++GV +L   +   ++ G    I+ D+MGLGK
Sbjct: 1249 DGKKLENYKIPVPINAE------LRKYQQDGVNWL-AFLNKYKLHG----ILCDDMGLGK 1297

Query: 190  TLQCITLMWT---------LLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGR-IQ 239
            TLQ I ++              +  EC P    ++VV P +L  +W +EVGK+     + 
Sbjct: 1298 TLQSICILAGDHCHRAQEYARSKLAECMPL--PSLVVCPPTLTGHWVDEVGKFCSREYLN 1355

Query: 240  PLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGH 299
            PL   G   + I  +L+  + +        +++ SY+  R  +   +       I DEGH
Sbjct: 1356 PLHYTGPPTERI--RLQHQVKRHN------LIVASYDVVRNDIDFFRNIKFNYCILDEGH 1407

Query: 300  RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFEL 359
             +KN + +  +A+  L  + R+++SGTPIQN++LE +SL  F+  G LGT  +F   +  
Sbjct: 1408 VIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGK 1467

Query: 360  PILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPL 419
            PIL  RDA +S  +++ G   +  L   V   L+RR  + + + LP KI Q   C L+PL
Sbjct: 1468 PILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPL 1527

Query: 420  QTELYKRFLR------------QAKPAEELLEGKMSVSS--LSSITSLKKLCNHPALIYD 465
            Q +LY+ F +             A  +EE  + K+  +     ++  L+KLCNHPAL+  
Sbjct: 1528 QVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLT 1587

Query: 466  KCVEEEDGFVGALDLFPPGYSSKALEPQLSG-KMLVLDYILAVTRSRSS--------DKV 516
                E       L +           P+LS  K L+LD  L    +  S         ++
Sbjct: 1588 PQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRI 1647

Query: 517  VLVSNYTQTLDLFE-KLCRAR--RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS 573
            ++       LD+ E  L +       Y+RLDG++   +R  +V RFN+  S D V +L++
Sbjct: 1648 LIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSID-VLLLTT 1706

Query: 574  KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQ 633
              GG GLNL GA+ +V  + DWNP  D QAM R  R GQK+   +YRL++ GT+EEKI  
Sbjct: 1707 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1766

Query: 634  RQSHKKALSSCVVDEEQDVERHFSLGELKELFILDEASLSDTHD 677
             Q  K  +++ V+ +E    +     +L +LF LD+   ++  D
Sbjct: 1767 LQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKAD 1810


>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
           [Homo sapiens]
          Length = 1828

 Score =  228 bits (580), Expect = 2e-59
 Identities = 165/497 (33%), Positives = 252/497 (50%), Gaps = 43/497 (8%)

Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212
           LR +Q EG+ +L           ++  I+ADEMGLGKT+Q I+ +  L  Q     P + 
Sbjct: 484 LRDYQLEGLNWLAHSWCK-----NNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFL- 537

Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILI 272
              +V P S + +W  E   W    I  +   G        +   +++ +  R+    LI
Sbjct: 538 ---IVVPLSTLTSWQREFEIW-APEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 593

Query: 273 ISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDL 332
            +YE       VL   +   +  DE HRLKN ++  Y+ L    ++ R+LI+GTP+QN L
Sbjct: 594 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 653

Query: 333 LEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCL 392
            E +SL+HF    I+    EF + FE    KGR            E   + L  ++   L
Sbjct: 654 KELWSLLHF----IMPEKFEFWEDFEEDHGKGR------------ENGYQSLHKVLEPFL 697

Query: 393 IRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSS--LSSI 450
           +RR    + K LP K+EQ++   ++ LQ + YK  L +   A  L +G    +S  L+ +
Sbjct: 698 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKA--LAKGTRGSTSGFLNIV 755

Query: 451 TSLKKLCNHPALIYD-KCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTR 509
             LKK CNH  LI   +  E E+G    L L            + SGK+++LD +L   R
Sbjct: 756 MELKKCCNHCYLIKPPEENERENGQEILLSLI-----------RSSGKLILLDKLLTRLR 804

Query: 510 SRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVF 569
            R + +V++ S   + LD+  +    + Y + RLDG++  + R + ++ FN+  S DF F
Sbjct: 805 ERGN-RVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF 863

Query: 570 MLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEE 629
           +LS++AGG G+NL  A+ +V+FD DWNP ND QA AR  R GQKK   IYRL++ GT+EE
Sbjct: 864 LLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEE 923

Query: 630 KIFQRQSHKKALSSCVV 646
           +I +R   K  L   V+
Sbjct: 924 EIIERAKKKMVLDHLVI 940


>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a1 isoform b [Homo sapiens]
          Length = 1042

 Score =  226 bits (576), Expect = 6e-59
 Identities = 165/505 (32%), Positives = 260/505 (51%), Gaps = 47/505 (9%)

Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212
           LR +Q  G+ +L     +    G +G I+ADEMGLGKTLQ I L+  L        P + 
Sbjct: 183 LRDYQIRGLNWLISLYEN----GVNG-ILADEMGLGKTLQTIALLGYLKHYRNIPGPHM- 236

Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILI 272
              V+ P S + NW NE  +W+        +  G KD        F+          + +
Sbjct: 237 ---VLVPKSTLHNWMNEFKRWVPSLRVICFV--GDKDA----RAAFIRDEMMPGEWDVCV 287

Query: 273 ISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDL 332
            SYE       V +K     ++ DE HR+KN +++  + +    ++ R+L++GTP+QN+L
Sbjct: 288 TSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNL 347

Query: 333 LEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRE-LTSIVNRC 391
            E ++L++F+   +  +A +F   F+                 LG+++L E L +++   
Sbjct: 348 HELWALLNFLLPDVFNSADDFDSWFD-------------TKNCLGDQKLVERLHAVLKPF 394

Query: 392 LIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEEL-LEGKMSVSSLSSI 450
           L+RR    + K LP K E  +   L+ +Q E Y + L   K  + L   GKM    L +I
Sbjct: 395 LLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILM--KDIDVLNSSGKMDKMRLLNI 452

Query: 451 T-SLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTR 509
              L+K CNHP L           F GA     P Y++       SGKM+VLD +LA  +
Sbjct: 453 LMQLRKCCNHPYL-----------FDGAEP--GPPYTTDEHIVSNSGKMVVLDKLLAKLK 499

Query: 510 SRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVF 569
            + S +V++ S  T+ LD+ E  C  R Y Y RLDG    ++R + +E FN+P+S  F+F
Sbjct: 500 EQGS-RVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAPNSSKFIF 558

Query: 570 MLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEE 629
           MLS++AGG G+NL  A+ ++++D DWNP  D QAM R  R GQKK   ++RL++  T+EE
Sbjct: 559 MLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEE 618

Query: 630 KIFQRQSHKKALSSCVVDEEQDVER 654
           +I +R   K  L S V+ + + +++
Sbjct: 619 RIVERAEIKLRLDSIVIQQGRLIDQ 643


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
            sapiens]
          Length = 2881

 Score =  224 bits (570), Expect = 3e-58
 Identities = 164/522 (31%), Positives = 263/522 (50%), Gaps = 44/522 (8%)

Query: 153  LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212
            LR +Q EG+ +L     +RR      CI+ADEMGLGKT+Q IT ++ +L           
Sbjct: 860  LREYQLEGLNWLLFNWYNRR-----NCILADEMGLGKTIQSITFLYEILLTGIR-----G 909

Query: 213  KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGG--SKDEIDQKLEGFMNQRGARVSSPI 270
              ++++P S + NW  E   W    I  +   G   S+  I Q    F + +G  +    
Sbjct: 910  PFLIIAPLSTIANWEREFRTWTD--INVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAY 967

Query: 271  ----LIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGT 326
                +I ++E      G L       VI DE HRLKN   +  + L  +N   +VL++GT
Sbjct: 968  RFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGT 1027

Query: 327  PIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTS 386
            P+QN + E FSL+HF+      +   F + F               D +  EE++++L +
Sbjct: 1028 PLQNTVEELFSLLHFLEPLRFPSESTFMQEF--------------GDLKT-EEQVQKLQA 1072

Query: 387  IVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSS 446
            I+   ++RR  + + K L  K E ++   LT +Q + Y+  L +         G+ +V +
Sbjct: 1073 ILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPN 1132

Query: 447  L-SSITSLKKLCNHPALIYDKCVEEEDGFVGAL-DLFPPGYSSKALEP--QLSGKMLVLD 502
            L +++  L+K CNHP LI  K  EE+   +G   D + P  S   L+   Q +GK++++D
Sbjct: 1133 LVNTMMELRKCCNHPYLI--KGAEEK--ILGEFRDTYNPAASDFHLQAMIQSAGKLVLID 1188

Query: 503  YILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSP 562
             +L   ++    KV++ S   + LD+ E     +RYLY R+DG +    R   ++RF+ P
Sbjct: 1189 KLLPKMKA-GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKP 1247

Query: 563  SSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 622
             S  FVF+L ++AGG G+NL  A+  ++FD DWNP ND QA AR  R GQ K   +YRL+
Sbjct: 1248 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLV 1307

Query: 623  SAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKEL 664
            +  + E ++F R S K  L   V+       R  ++G +++L
Sbjct: 1308 TRNSYEREMFDRASLKLGLDKAVLQSMSG--RESNVGGIQQL 1347


>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
            sapiens]
          Length = 1912

 Score =  221 bits (564), Expect = 1e-57
 Identities = 161/549 (29%), Positives = 263/549 (47%), Gaps = 53/549 (9%)

Query: 113  LEKDALVLYEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRR 172
            L+K  L   E PP +      +  E+ P ++         L P+Q EG+ +L       R
Sbjct: 689  LKKVKLRKLERPPETPTVDPTVKYERQPEYL---DATGGTLHPYQMEGLNWL-------R 738

Query: 173  IPGSHGC--IMADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEV 230
               + G   I+ADEMGLGKT+Q    +++L ++     P +    V +P S + NW  E 
Sbjct: 739  FSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFL----VSAPLSTIINWEREF 794

Query: 231  GKW---------LGGRIQPLAIDGGSKDEIDQKLEGFMN----QRGARVSSPILIISYET 277
              W         +G +     I        D  + G       ++ A V   +L+ SYE 
Sbjct: 795  EMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYEL 854

Query: 278  FRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFS 337
              + + +L       +I DE HRLKN++++ ++ L+  +   ++L++GTP+QN+L E F 
Sbjct: 855  ITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFH 914

Query: 338  LVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTS 397
            L++F+          F + F        D A         E+++++L  ++   ++RR  
Sbjct: 915  LLNFLTPERFHNLEGFLEEFA-------DIAK--------EDQIKKLHDMLGPHMLRRLK 959

Query: 398  DILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLC 457
              + K +P K E +V   L+P+Q + YK  L +   A     G   VS L+ +  LKK C
Sbjct: 960  ADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCC 1019

Query: 458  NHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVV 517
            NHP L     +E            P G    +   + SGK+L+L  +L   +     +V+
Sbjct: 1020 NHPYLFPVAAMEAPK--------MPNGMYDGSALIRASGKLLLLQKMLKNLKE-GGHRVL 1070

Query: 518  LVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGG 577
            + S  T+ LDL E       Y Y R+DG ++   R + ++RFN+P +  F F+LS++AGG
Sbjct: 1071 IFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGG 1130

Query: 578  CGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSH 637
             G+NL  A+ ++++D DWNP ND QA +R  R GQ K   IYR ++  ++EE+I Q    
Sbjct: 1131 LGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1190

Query: 638  KKALSSCVV 646
            K  L+  VV
Sbjct: 1191 KMMLTHLVV 1199


>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5 [Homo sapiens]
          Length = 1052

 Score =  221 bits (563), Expect = 2e-57
 Identities = 167/515 (32%), Positives = 263/515 (51%), Gaps = 61/515 (11%)

Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212
           LR +Q  G+ +L     +    G +G I+ADEMGLGKTLQ I+L+  +        P + 
Sbjct: 180 LRDYQVRGLNWLISLYEN----GING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHM- 233

Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPIL- 271
              V+ P S + NW +E  +W+   ++ + + G  +            QR A V   +L 
Sbjct: 234 ---VLVPKSTLHNWMSEFKRWVP-TLRSVCLIGDKE------------QRAAFVRDVLLP 277

Query: 272 ------IISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISG 325
                 + SYE       V +K +   ++ DE HR+KN +++  + +    T+ R+L++G
Sbjct: 278 GEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 337

Query: 326 TPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELT 385
           TP+QN+L E +SL++F+   +  +A +F   F+              +  LG+++L E  
Sbjct: 338 TPLQNNLHELWSLLNFLLPDVFNSADDFDSWFD-------------TNNCLGDQKLVERL 384

Query: 386 SIVNR-CLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLE-GKMS 443
            +V R  L+RR    + K LP K E  +   L+ +Q E Y R L   K  + L   GKM 
Sbjct: 385 HMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILM--KDIDILNSAGKMD 442

Query: 444 VSSLSSIT-SLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLD 502
              L +I   L+K CNHP L           F GA     P Y++       SGKM+VLD
Sbjct: 443 KMRLLNILMQLRKCCNHPYL-----------FDGAEP--GPPYTTDMHLVTNSGKMVVLD 489

Query: 503 YILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSP 562
            +L   + + S +V++ S  T+ LD+ E  C  R Y Y RLDG     +R   +  +N P
Sbjct: 490 KLLPKLKEQGS-RVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEP 548

Query: 563 SSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 622
           +S  FVFMLS++AGG G+NL  A+ ++++D DWNP  D QAM R  R GQ KT  ++R +
Sbjct: 549 NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFI 608

Query: 623 SAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFS 657
           +  T+EE+I +R   K  L S V+ + + V+++ +
Sbjct: 609 TDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLN 643


>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
           sapiens]
          Length = 1710

 Score =  220 bits (561), Expect = 3e-57
 Identities = 156/500 (31%), Positives = 255/500 (51%), Gaps = 49/500 (9%)

Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212
           LR +Q  G+ +L            + CI+ADEMGLGKT+Q I+ +  L  +     P + 
Sbjct: 481 LRDYQLNGLNWLAHSWCK-----GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFL- 534

Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILI 272
              +V P S + +W  E+  W   ++  +   G        +   + + +  R+   IL+
Sbjct: 535 ---LVVPLSTLTSWQREIQTW-ASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILL 590

Query: 273 ISYETF---RLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQ 329
            +YE     +  +G L    +G+   DE HRLKN ++  Y+ L    ++ R+LI+GTP+Q
Sbjct: 591 TTYEILLKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 647

Query: 330 NDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVN 389
           N L E +SL+HF+      +  +F++       KGR+   +   ++L             
Sbjct: 648 NSLKELWSLLHFIMPEKFSSWEDFEEEHG----KGREYGYASLHKEL------------E 691

Query: 390 RCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFL-RQAKPAEELLEGKMSVSSLS 448
             L+RR    + K LP K+EQ++   ++ LQ + YK  L R  K   +  +G  S   L+
Sbjct: 692 PFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTS-GFLN 750

Query: 449 SITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQL--SGKMLVLDYILA 506
            +  LKK CNH  LI      + + F             +AL+  +  SGK+++LD +L 
Sbjct: 751 IMMELKKCCNHCYLIKPP---DNNEFYN---------KQEALQHLIRSSGKLILLDKLLI 798

Query: 507 VTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPD 566
             R R + +V++ S   + LD+  +  + R++ + RLDG++  + R + ++ FN+  S D
Sbjct: 799 RLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 857

Query: 567 FVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGT 626
           F F+LS++AGG G+NL  A+ +V+FD DWNP ND QA AR  R GQKK   IYRL++ G+
Sbjct: 858 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 917

Query: 627 IEEKIFQRQSHKKALSSCVV 646
           +EE I +R   K  L   V+
Sbjct: 918 VEEDILERAKKKMVLDHLVI 937


>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
            sapiens]
          Length = 1954

 Score =  220 bits (560), Expect = 4e-57
 Identities = 161/544 (29%), Positives = 262/544 (48%), Gaps = 63/544 (11%)

Query: 131  QLKLDK-EKLPVHVVVDPILS------------KVLRPHQREGVKFLWECVTSRRIPGSH 177
            +L+ DK EK P   +VDP +               L P+Q EG+ +L       R   + 
Sbjct: 665  KLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWL-------RFSWAQ 717

Query: 178  GC--IMADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWL- 234
            G   I+ADEMGLGKT+Q I  +++L ++     P +    V +P S + NW  E   W  
Sbjct: 718  GTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYL----VSAPLSTIINWEREFEMWAP 773

Query: 235  --------GGRIQPLAIDGGSKDEIDQKLEG----FMNQRGARVSSPILIISYETFRLHV 282
                    G +     I        D  +      F  ++  ++   +L+ SYE   +  
Sbjct: 774  DFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQ 833

Query: 283  GVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFV 342
             +L       ++ DE HRLKN++++ ++ L+S     ++L++GTP+QN+L E F L++F+
Sbjct: 834  AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL 893

Query: 343  NSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSK 402
                      F + F         A  S+      E+++++L  ++   ++RR    + K
Sbjct: 894  TPERFNNLEGFLEEF---------ADISK------EDQIKKLHDLLGPHMLRRLKADVFK 938

Query: 403  YLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPAL 462
             +P K E +V   L+ +Q + YK  L +   A     G   VS L+ +  LKK CNHP L
Sbjct: 939  NMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYL 998

Query: 463  IYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNY 522
                 VE          + P G    +   + SGK+++L  +L   R     +V++ S  
Sbjct: 999  FPVAAVEAP--------VLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGH-RVLIFSQM 1049

Query: 523  TQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL 582
            T+ LDL E       Y Y R+DG ++   R + ++RFN+P +  F F+LS++AGG G+NL
Sbjct: 1050 TKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL 1109

Query: 583  IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALS 642
              A+ ++++D DWNP ND QA +R  R GQ K   IYR ++  ++EE+I Q    K  L+
Sbjct: 1110 ATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLT 1169

Query: 643  SCVV 646
              VV
Sbjct: 1170 HLVV 1173


>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
            [Homo sapiens]
          Length = 2000

 Score =  218 bits (554), Expect = 2e-56
 Identities = 156/509 (30%), Positives = 250/509 (49%), Gaps = 50/509 (9%)

Query: 153  LRPHQREGVKFLWECVTSRRIPGSHGC--IMADEMGLGKTLQCITLMWTLLRQSPECKPE 210
            L  +Q EG+ +L       R   + G   I+ADEMGLGKT+Q I  +++L ++     P 
Sbjct: 736  LHMYQLEGLNWL-------RFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPF 788

Query: 211  IDKAVVVSPSSLVKNWYNEVGKWL---------GGRIQPLAIDGGSKDEIDQKLEG---- 257
            +    V +P S + NW  E   W          G +     I        D  ++G    
Sbjct: 789  L----VSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 844

Query: 258  FMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNT 317
            F  +R A+V   +L+ SYE   +    L       ++ DE HRLKN++++ ++ L+    
Sbjct: 845  FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKI 904

Query: 318  SRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLG 377
              ++L++GTP+QN+L E F L++F+          F + F         A  S+      
Sbjct: 905  DHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF---------ADISK------ 949

Query: 378  EERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEEL 437
            E+++++L  ++   ++RR    + K +P K E +V   L+P+Q + YK  L +   A   
Sbjct: 950  EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNS 1009

Query: 438  LEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGK 497
              G   VS L+ +  LKK CNHP L     +E      GA       Y   AL    SGK
Sbjct: 1010 RGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGA-------YEGGALIKS-SGK 1061

Query: 498  MLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVE 557
            +++L  +L   + +   +V++ S  T+ LDL E       Y Y R+DG ++   R + ++
Sbjct: 1062 LMLLQKMLRKLKEQGH-RVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAID 1120

Query: 558  RFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 617
            RFN+P +  F F+LS++AGG G+NL  A+ +++FD DWNP ND QA +R  R GQ     
Sbjct: 1121 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVM 1180

Query: 618  IYRLLSAGTIEEKIFQRQSHKKALSSCVV 646
            IYR ++  ++EE+I Q    K  L+  VV
Sbjct: 1181 IYRFVTRASVEERITQVAKRKMMLTHLVV 1209


>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
            [Homo sapiens]
          Length = 1966

 Score =  218 bits (554), Expect = 2e-56
 Identities = 156/509 (30%), Positives = 250/509 (49%), Gaps = 50/509 (9%)

Query: 153  LRPHQREGVKFLWECVTSRRIPGSHGC--IMADEMGLGKTLQCITLMWTLLRQSPECKPE 210
            L  +Q EG+ +L       R   + G   I+ADEMGLGKT+Q I  +++L ++     P 
Sbjct: 736  LHMYQLEGLNWL-------RFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPF 788

Query: 211  IDKAVVVSPSSLVKNWYNEVGKWL---------GGRIQPLAIDGGSKDEIDQKLEG---- 257
            +    V +P S + NW  E   W          G +     I        D  ++G    
Sbjct: 789  L----VSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 844

Query: 258  FMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNT 317
            F  +R A+V   +L+ SYE   +    L       ++ DE HRLKN++++ ++ L+    
Sbjct: 845  FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKI 904

Query: 318  SRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLG 377
              ++L++GTP+QN+L E F L++F+          F + F         A  S+      
Sbjct: 905  DHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF---------ADISK------ 949

Query: 378  EERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEEL 437
            E+++++L  ++   ++RR    + K +P K E +V   L+P+Q + YK  L +   A   
Sbjct: 950  EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNS 1009

Query: 438  LEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGK 497
              G   VS L+ +  LKK CNHP L     +E      GA       Y   AL    SGK
Sbjct: 1010 RGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGA-------YEGGALIKS-SGK 1061

Query: 498  MLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVE 557
            +++L  +L   + +   +V++ S  T+ LDL E       Y Y R+DG ++   R + ++
Sbjct: 1062 LMLLQKMLRKLKEQGH-RVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAID 1120

Query: 558  RFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 617
            RFN+P +  F F+LS++AGG G+NL  A+ +++FD DWNP ND QA +R  R GQ     
Sbjct: 1121 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVM 1180

Query: 618  IYRLLSAGTIEEKIFQRQSHKKALSSCVV 646
            IYR ++  ++EE+I Q    K  L+  VV
Sbjct: 1181 IYRFVTRASVEERITQVAKRKMMLTHLVV 1209


>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
            [Homo sapiens]
          Length = 2059

 Score =  218 bits (554), Expect = 2e-56
 Identities = 156/509 (30%), Positives = 250/509 (49%), Gaps = 50/509 (9%)

Query: 153  LRPHQREGVKFLWECVTSRRIPGSHGC--IMADEMGLGKTLQCITLMWTLLRQSPECKPE 210
            L  +Q EG+ +L       R   + G   I+ADEMGLGKT+Q I  +++L ++     P 
Sbjct: 795  LHMYQLEGLNWL-------RFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPF 847

Query: 211  IDKAVVVSPSSLVKNWYNEVGKWL---------GGRIQPLAIDGGSKDEIDQKLEG---- 257
            +    V +P S + NW  E   W          G +     I        D  ++G    
Sbjct: 848  L----VSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 903

Query: 258  FMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNT 317
            F  +R A+V   +L+ SYE   +    L       ++ DE HRLKN++++ ++ L+    
Sbjct: 904  FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKI 963

Query: 318  SRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLG 377
              ++L++GTP+QN+L E F L++F+          F + F         A  S+      
Sbjct: 964  DHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF---------ADISK------ 1008

Query: 378  EERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEEL 437
            E+++++L  ++   ++RR    + K +P K E +V   L+P+Q + YK  L +   A   
Sbjct: 1009 EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNS 1068

Query: 438  LEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGK 497
              G   VS L+ +  LKK CNHP L     +E      GA       Y   AL    SGK
Sbjct: 1069 RGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGA-------YEGGALIKS-SGK 1120

Query: 498  MLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVE 557
            +++L  +L   + +   +V++ S  T+ LDL E       Y Y R+DG ++   R + ++
Sbjct: 1121 LMLLQKMLRKLKEQGH-RVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAID 1179

Query: 558  RFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 617
            RFN+P +  F F+LS++AGG G+NL  A+ +++FD DWNP ND QA +R  R GQ     
Sbjct: 1180 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVM 1239

Query: 618  IYRLLSAGTIEEKIFQRQSHKKALSSCVV 646
            IYR ++  ++EE+I Q    K  L+  VV
Sbjct: 1240 IYRFVTRASVEERITQVAKRKMMLTHLVV 1268


>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
            sapiens]
          Length = 2302

 Score =  217 bits (553), Expect = 3e-56
 Identities = 154/501 (30%), Positives = 249/501 (49%), Gaps = 36/501 (7%)

Query: 153  LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212
            LR +Q EGV +L     +R+      CI+ADEMGLGKT+Q I  +  +            
Sbjct: 532  LREYQLEGVNWLLFNWYNRQ-----NCILADEMGLGKTIQSIAFLQEVYNVGIH-----G 581

Query: 213  KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGG--SKDEIDQKLEGFMNQRGARVSSPI 270
              +V++P S + NW  E   W    +  +   G   S+  I Q      + RG  +    
Sbjct: 582  PFLVIAPLSTITNWEREFNTWT--EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 639

Query: 271  ----LIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGT 326
                LI ++E        L++     VI DE HRLKN   +   +L  ++   +VL++GT
Sbjct: 640  KFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGT 699

Query: 327  PIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTS 386
            P+QN + E FSL+HF+      +  EF K F               D +  EE++++L +
Sbjct: 700  PLQNTVEELFSLLHFLEPSQFPSESEFLKDF--------------GDLKT-EEQVQKLQA 744

Query: 387  IVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSS 446
            I+   ++RR  + + K L  K E ++   LT +Q + Y+  L +         G  ++ +
Sbjct: 745  ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPN 804

Query: 447  L-SSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYIL 505
            L +++  L+K CNHP LI     +    F  A  + P  +  +A+  + +GK++++D +L
Sbjct: 805  LLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMV-RSAGKLVLIDKLL 863

Query: 506  AVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSP 565
               ++    KV++ S   + LD+ E     RRYLY R+DG +    R   ++RF+ P S 
Sbjct: 864  PKLKA-GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSD 922

Query: 566  DFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAG 625
             FVF+L ++AGG G+NL  A+  ++FD DWNP ND QA AR  R GQ K   +YRL++  
Sbjct: 923  RFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRN 982

Query: 626  TIEEKIFQRQSHKKALSSCVV 646
            + E ++F + S K  L   V+
Sbjct: 983  SYEREMFDKASLKLGLDKAVL 1003


>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a1 isoform a [Homo sapiens]
          Length = 1054

 Score =  217 bits (553), Expect = 3e-56
 Identities = 165/517 (31%), Positives = 260/517 (50%), Gaps = 59/517 (11%)

Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212
           LR +Q  G+ +L     +    G +G I+ADEMGLGKTLQ I L+  L        P + 
Sbjct: 183 LRDYQIRGLNWLISLYEN----GVNG-ILADEMGLGKTLQTIALLGYLKHYRNIPGPHM- 236

Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILI 272
              V+ P S + NW NE  +W+        +  G KD        F+          + +
Sbjct: 237 ---VLVPKSTLHNWMNEFKRWVPSLRVICFV--GDKDA----RAAFIRDEMMPGEWDVCV 287

Query: 273 ISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDL 332
            SYE       V +K     ++ DE HR+KN +++  + +    ++ R+L++GTP+QN+L
Sbjct: 288 TSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNL 347

Query: 333 LEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRE-LTSIVNRC 391
            E ++L++F+   +  +A +F   F+                 LG+++L E L +++   
Sbjct: 348 HELWALLNFLLPDVFNSADDFDSWFD-------------TKNCLGDQKLVERLHAVLKPF 394

Query: 392 LIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEEL-LEGKMSVSSLSSI 450
           L+RR    + K LP K E  +   L+ +Q E Y + L   K  + L   GKM    L +I
Sbjct: 395 LLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILM--KDIDVLNSSGKMDKMRLLNI 452

Query: 451 T-SLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTR 509
              L+K CNHP L           F GA     P Y++       SGKM+VLD +LA  +
Sbjct: 453 LMQLRKCCNHPYL-----------FDGAEP--GPPYTTDEHIVSNSGKMVVLDKLLAKLK 499

Query: 510 SRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRA------------KVVE 557
            + S +V++ S  T+ LD+ E  C  R Y Y RLDG    ++R             + +E
Sbjct: 500 EQGS-RVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIE 558

Query: 558 RFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 617
            FN+P+S  F+FMLS++AGG G+NL  A+ ++++D DWNP  D QAM R  R GQKK   
Sbjct: 559 AFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 618

Query: 618 IYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVER 654
           ++RL++  T+EE+I +R   K  L S V+ + + +++
Sbjct: 619 VFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQ 655


>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
            sapiens]
          Length = 2997

 Score =  214 bits (545), Expect = 2e-55
 Identities = 152/502 (30%), Positives = 251/502 (50%), Gaps = 38/502 (7%)

Query: 153  LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212
            LR +Q EGV +L     + R      CI+ADEMGLGKT+Q IT ++ +  +         
Sbjct: 968  LREYQLEGVNWLLFNWYNMR-----NCILADEMGLGKTIQSITFLYEIYLKGIH-----G 1017

Query: 213  KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPI-- 270
              +V++P S + NW  E   W    +        S+  I      F + +G  +      
Sbjct: 1018 PFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKF 1077

Query: 271  --LIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPI 328
              +I ++E        L+      V+ DE HRLKN   +  + L  ++   +VL++GTP+
Sbjct: 1078 HAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPL 1137

Query: 329  QNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIV 388
            QN + E FSL+HF+      +   F + F               D +  EE++++L +I+
Sbjct: 1138 QNTVEELFSLLHFLEPSRFPSETTFMQEF--------------GDLKT-EEQVQKLQAIL 1182

Query: 389  NRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSL- 447
               ++RR  + + K L  K E ++   LT +Q + Y+  L +         G+ +V +L 
Sbjct: 1183 KPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLL 1242

Query: 448  SSITSLKKLCNHPALIY---DKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYI 504
            +++  L+K CNHP LI    +K +EE   F    +   P +  +A+  Q +GK++++D +
Sbjct: 1243 NTMMELRKCCNHPYLINGAEEKILEE---FKETHNAESPDFQLQAMI-QAAGKLVLIDKL 1298

Query: 505  LAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSS 564
            L   ++    +V++ S   + LD+ E     RRY Y R+DG +    R   ++RF+ P S
Sbjct: 1299 LPKLKA-GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDS 1357

Query: 565  PDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSA 624
              FVF+L ++AGG G+NL  A+  ++FD DWNP ND QA AR  R GQ K+  IYRL++ 
Sbjct: 1358 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1417

Query: 625  GTIEEKIFQRQSHKKALSSCVV 646
             + E ++F + S K  L   V+
Sbjct: 1418 NSYEREMFDKASLKLGLDKAVL 1439


>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
           sapiens]
          Length = 2715

 Score =  212 bits (539), Expect = 1e-54
 Identities = 157/524 (29%), Positives = 257/524 (49%), Gaps = 43/524 (8%)

Query: 150 SKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKP 209
           S  LR +Q EG+ +L     +R+      CI+ADEMGLGKT+Q IT +  +  +      
Sbjct: 458 SNQLREYQLEGMNWLLFNWYNRK-----NCILADEMGLGKTIQSITFLSEIFLRGIH--- 509

Query: 210 EIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGG--SKDEIDQKLEGFMNQRGARVS 267
                ++++P S + NW  E   W    +  +   G   S+  I Q    + + +G  +S
Sbjct: 510 --GPFLIIAPLSTITNWEREFRTWT--EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLS 565

Query: 268 SP----ILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLI 323
                 ++I ++E        L+K     VI DE HRLKN   +  + L  +    +VL+
Sbjct: 566 GVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLL 625

Query: 324 SGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRE 383
           +GTP+QN + E FSL++F+      +   F + F               D +  EE++++
Sbjct: 626 TGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEF--------------GDLKT-EEQVKK 670

Query: 384 LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMS 443
           L SI+   ++RR  D + K L  K E ++   LT +Q + Y+  L   K    L +G   
Sbjct: 671 LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILE--KNFSFLTKGANQ 728

Query: 444 VSS---LSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLV 500
            +    ++++  L+K CNHP LI     +  + F        P +  +A+  Q +GK+++
Sbjct: 729 HNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMI-QAAGKLVL 787

Query: 501 LDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFN 560
           +D +L    +    KV++ S   + LD+ E     RRY Y R+DG +    R   ++RF 
Sbjct: 788 IDKLLPKLIA-GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFC 846

Query: 561 SPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 620
            P S  FVF+L ++AGG G+NL  A+  ++FD DWNP ND QA AR  R GQ K   +YR
Sbjct: 847 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 906

Query: 621 LLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKEL 664
           L++  + E ++F + S K  L   V+   QD+ R      +++L
Sbjct: 907 LITRNSYEREMFDKASLKLGLDKAVL---QDINRKGGTNGVQQL 947


>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform A [Homo sapiens]
          Length = 1679

 Score =  211 bits (538), Expect = 2e-54
 Identities = 168/552 (30%), Positives = 271/552 (49%), Gaps = 75/552 (13%)

Query: 148  ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207
            +++ VL+ +Q +G+++L   + +  + G    I+ADEMGLGKT+Q I L+  L+      
Sbjct: 749  MVNGVLKQYQIKGLEWLVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRIN 803

Query: 208  KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265
             P +    ++ P S + NW  E  KW     ++         +  + Q   G  N     
Sbjct: 804  GPFL----IIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFN----- 854

Query: 266  VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324
                +L+ +YE       +L K     +I DEGHR+KN   +  Q L++   + RR+L++
Sbjct: 855  ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT 910

Query: 325  GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383
            GTP+QN L E ++L++F+   I  +   F++ F  P  + G     +E +  L    +R 
Sbjct: 911  GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL---IIRR 967

Query: 384  LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437
            L  ++   L+RR    +   LP K+E V+ C ++ LQ  LY+    QAK       +E+ 
Sbjct: 968  LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM--QAKGVLLTDGSEKD 1025

Query: 438  LEGKMSVSSL-SSITSLKKLCNHPALIY--DKCVEEEDGFVGA----LDLFPPGYSSKAL 490
             +GK    +L ++I  L+K+CNHP +    ++   E  GF G     LDL+         
Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY--------- 1076

Query: 491  EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550
              + SGK  +LD IL   R+ ++ KV+L    T  + + E     R + Y+RLDGT   +
Sbjct: 1077 --RASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 551  KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610
             R  +++ FN P S  F+F+LS++AGG GLNL  A+ +++FD DWNP  D QA  R  R 
Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193

Query: 611  GQKKTCYIYRLLSAGTIEEKIF---------------------QRQSHKKA--LSSCVVD 647
            GQ+    + RL +  ++EEKI                      +  SH++   L + +  
Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEH 1253

Query: 648  EEQDVERHFSLG 659
            EEQD  RH S G
Sbjct: 1254 EEQDESRHCSTG 1265


>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score =  211 bits (538), Expect = 2e-54
 Identities = 168/552 (30%), Positives = 271/552 (49%), Gaps = 75/552 (13%)

Query: 148  ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207
            +++ VL+ +Q +G+++L   + +  + G    I+ADEMGLGKT+Q I L+  L+      
Sbjct: 749  MVNGVLKQYQIKGLEWLVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRIN 803

Query: 208  KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265
             P +    ++ P S + NW  E  KW     ++         +  + Q   G  N     
Sbjct: 804  GPFL----IIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFN----- 854

Query: 266  VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324
                +L+ +YE       +L K     +I DEGHR+KN   +  Q L++   + RR+L++
Sbjct: 855  ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT 910

Query: 325  GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383
            GTP+QN L E ++L++F+   I  +   F++ F  P  + G     +E +  L    +R 
Sbjct: 911  GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL---IIRR 967

Query: 384  LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437
            L  ++   L+RR    +   LP K+E V+ C ++ LQ  LY+    QAK       +E+ 
Sbjct: 968  LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM--QAKGVLLTDGSEKD 1025

Query: 438  LEGKMSVSSL-SSITSLKKLCNHPALIY--DKCVEEEDGFVGA----LDLFPPGYSSKAL 490
             +GK    +L ++I  L+K+CNHP +    ++   E  GF G     LDL+         
Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY--------- 1076

Query: 491  EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550
              + SGK  +LD IL   R+ ++ KV+L    T  + + E     R + Y+RLDGT   +
Sbjct: 1077 --RASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 551  KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610
             R  +++ FN P S  F+F+LS++AGG GLNL  A+ +++FD DWNP  D QA  R  R 
Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193

Query: 611  GQKKTCYIYRLLSAGTIEEKIF---------------------QRQSHKKA--LSSCVVD 647
            GQ+    + RL +  ++EEKI                      +  SH++   L + +  
Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEH 1253

Query: 648  EEQDVERHFSLG 659
            EEQD  RH S G
Sbjct: 1254 EEQDESRHCSTG 1265


>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score =  211 bits (538), Expect = 2e-54
 Identities = 168/552 (30%), Positives = 271/552 (49%), Gaps = 75/552 (13%)

Query: 148  ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207
            +++ VL+ +Q +G+++L   + +  + G    I+ADEMGLGKT+Q I L+  L+      
Sbjct: 749  MVNGVLKQYQIKGLEWLVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRIN 803

Query: 208  KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265
             P +    ++ P S + NW  E  KW     ++         +  + Q   G  N     
Sbjct: 804  GPFL----IIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFN----- 854

Query: 266  VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324
                +L+ +YE       +L K     +I DEGHR+KN   +  Q L++   + RR+L++
Sbjct: 855  ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT 910

Query: 325  GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383
            GTP+QN L E ++L++F+   I  +   F++ F  P  + G     +E +  L    +R 
Sbjct: 911  GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL---IIRR 967

Query: 384  LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437
            L  ++   L+RR    +   LP K+E V+ C ++ LQ  LY+    QAK       +E+ 
Sbjct: 968  LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM--QAKGVLLTDGSEKD 1025

Query: 438  LEGKMSVSSL-SSITSLKKLCNHPALIY--DKCVEEEDGFVGA----LDLFPPGYSSKAL 490
             +GK    +L ++I  L+K+CNHP +    ++   E  GF G     LDL+         
Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY--------- 1076

Query: 491  EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550
              + SGK  +LD IL   R+ ++ KV+L    T  + + E     R + Y+RLDGT   +
Sbjct: 1077 --RASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 551  KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610
             R  +++ FN P S  F+F+LS++AGG GLNL  A+ +++FD DWNP  D QA  R  R 
Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193

Query: 611  GQKKTCYIYRLLSAGTIEEKIF---------------------QRQSHKKA--LSSCVVD 647
            GQ+    + RL +  ++EEKI                      +  SH++   L + +  
Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEH 1253

Query: 648  EEQDVERHFSLG 659
            EEQD  RH S G
Sbjct: 1254 EEQDESRHCSTG 1265


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score =  211 bits (538), Expect = 2e-54
 Identities = 159/514 (30%), Positives = 261/514 (50%), Gaps = 48/514 (9%)

Query: 148  ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207
            +++  L+ +Q +G++++   + +  + G    I+ADEMGLGKT+Q I L+  L+      
Sbjct: 719  LINGTLKHYQLQGLEWMVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRLN 773

Query: 208  KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265
             P +    ++ P S + NW  E  KW     +I         +  + Q   G  N     
Sbjct: 774  GPYL----IIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFN----- 824

Query: 266  VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324
                +L+ +YE       +L K     +I DEGHR+KN   +  Q L++   + RR+L++
Sbjct: 825  ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 880

Query: 325  GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383
            GTP+QN L E ++L++F+   I  +   F++ F  P  + G     +E +  L    +R 
Sbjct: 881  GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETIL---IIRR 937

Query: 384  LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437
            L  ++   L+RR    +   LP K+E V+ C ++ LQ  LY+    QAK       +E+ 
Sbjct: 938  LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM--QAKGILLTDGSEKD 995

Query: 438  LEGKMSVSSL-SSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEP---- 492
             +GK    +L ++I  L+K+CNHP +        E+ F   L     GYS+  +      
Sbjct: 996  KKGKGGAKTLMNTIMQLRKICNHPYMFQ----HIEESFAEHL-----GYSNGVINGAELY 1046

Query: 493  QLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKR 552
            + SGK  +LD IL   R+ ++ +V+L    T  + + E     R +LY+RLDGT   + R
Sbjct: 1047 RASGKFELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDR 1105

Query: 553  AKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQ 612
            A ++++FN P S  F+F+LS++AGG GLNL  A+ +V+FD DWNP  D QA  R  R GQ
Sbjct: 1106 AALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQ 1165

Query: 613  KKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVV 646
            +    + RL +  ++EEKI     +K  +   V+
Sbjct: 1166 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1199


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score =  211 bits (538), Expect = 2e-54
 Identities = 159/514 (30%), Positives = 261/514 (50%), Gaps = 48/514 (9%)

Query: 148  ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207
            +++  L+ +Q +G++++   + +  + G    I+ADEMGLGKT+Q I L+  L+      
Sbjct: 719  LINGTLKHYQLQGLEWMVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRLN 773

Query: 208  KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265
             P +    ++ P S + NW  E  KW     +I         +  + Q   G  N     
Sbjct: 774  GPYL----IIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFN----- 824

Query: 266  VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324
                +L+ +YE       +L K     +I DEGHR+KN   +  Q L++   + RR+L++
Sbjct: 825  ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 880

Query: 325  GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383
            GTP+QN L E ++L++F+   I  +   F++ F  P  + G     +E +  L    +R 
Sbjct: 881  GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETIL---IIRR 937

Query: 384  LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437
            L  ++   L+RR    +   LP K+E V+ C ++ LQ  LY+    QAK       +E+ 
Sbjct: 938  LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM--QAKGILLTDGSEKD 995

Query: 438  LEGKMSVSSL-SSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEP---- 492
             +GK    +L ++I  L+K+CNHP +        E+ F   L     GYS+  +      
Sbjct: 996  KKGKGGAKTLMNTIMQLRKICNHPYMFQ----HIEESFAEHL-----GYSNGVINGAELY 1046

Query: 493  QLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKR 552
            + SGK  +LD IL   R+ ++ +V+L    T  + + E     R +LY+RLDGT   + R
Sbjct: 1047 RASGKFELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDR 1105

Query: 553  AKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQ 612
            A ++++FN P S  F+F+LS++AGG GLNL  A+ +V+FD DWNP  D QA  R  R GQ
Sbjct: 1106 AALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQ 1165

Query: 613  KKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVV 646
            +    + RL +  ++EEKI     +K  +   V+
Sbjct: 1166 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1199


>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform F [Homo sapiens]
          Length = 1613

 Score =  209 bits (533), Expect = 6e-54
 Identities = 159/516 (30%), Positives = 260/516 (50%), Gaps = 52/516 (10%)

Query: 148  ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207
            +++ VL+ +Q +G+++L   + +  + G    I+ADEMGLGKT+Q I L+  L+      
Sbjct: 749  MVNGVLKQYQIKGLEWLVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRIN 803

Query: 208  KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265
             P +    ++ P S + NW  E  KW     ++         +  + Q   G  N     
Sbjct: 804  GPFL----IIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFN----- 854

Query: 266  VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324
                +L+ +YE       +L K     +I DEGHR+KN   +  Q L++   + RR+L++
Sbjct: 855  ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT 910

Query: 325  GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383
            GTP+QN L E ++L++F+   I  +   F++ F  P  + G     +E +  L    +R 
Sbjct: 911  GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL---IIRR 967

Query: 384  LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437
            L  ++   L+RR    +   LP K+E V+ C ++ LQ  LY+    QAK       +E+ 
Sbjct: 968  LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM--QAKGVLLTDGSEKD 1025

Query: 438  LEGKMSVSSL-SSITSLKKLCNHPALIY--DKCVEEEDGFVGA----LDLFPPGYSSKAL 490
             +GK    +L ++I  L+K+CNHP +    ++   E  GF G     LDL+         
Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY--------- 1076

Query: 491  EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550
              + SGK  +LD IL   R+ ++ KV+L    T  + + E     R + Y+RLDGT   +
Sbjct: 1077 --RASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 551  KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610
             R  +++ FN P S  F+F+LS++AGG GLNL  A+ +++FD DWNP  D QA  R  R 
Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193

Query: 611  GQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVV 646
            GQ+    + RL +  ++EEKI     +K  +   V+
Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229


>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform E [Homo sapiens]
          Length = 1614

 Score =  209 bits (533), Expect = 6e-54
 Identities = 159/516 (30%), Positives = 260/516 (50%), Gaps = 52/516 (10%)

Query: 148  ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207
            +++ VL+ +Q +G+++L   + +  + G    I+ADEMGLGKT+Q I L+  L+      
Sbjct: 749  MVNGVLKQYQIKGLEWLVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRIN 803

Query: 208  KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265
             P +    ++ P S + NW  E  KW     ++         +  + Q   G  N     
Sbjct: 804  GPFL----IIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFN----- 854

Query: 266  VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324
                +L+ +YE       +L K     +I DEGHR+KN   +  Q L++   + RR+L++
Sbjct: 855  ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT 910

Query: 325  GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383
            GTP+QN L E ++L++F+   I  +   F++ F  P  + G     +E +  L    +R 
Sbjct: 911  GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL---IIRR 967

Query: 384  LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437
            L  ++   L+RR    +   LP K+E V+ C ++ LQ  LY+    QAK       +E+ 
Sbjct: 968  LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM--QAKGVLLTDGSEKD 1025

Query: 438  LEGKMSVSSL-SSITSLKKLCNHPALIY--DKCVEEEDGFVGA----LDLFPPGYSSKAL 490
             +GK    +L ++I  L+K+CNHP +    ++   E  GF G     LDL+         
Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY--------- 1076

Query: 491  EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550
              + SGK  +LD IL   R+ ++ KV+L    T  + + E     R + Y+RLDGT   +
Sbjct: 1077 --RASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 551  KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610
             R  +++ FN P S  F+F+LS++AGG GLNL  A+ +++FD DWNP  D QA  R  R 
Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193

Query: 611  GQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVV 646
            GQ+    + RL +  ++EEKI     +K  +   V+
Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229


>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform D [Homo sapiens]
          Length = 1616

 Score =  209 bits (533), Expect = 6e-54
 Identities = 159/516 (30%), Positives = 260/516 (50%), Gaps = 52/516 (10%)

Query: 148  ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207
            +++ VL+ +Q +G+++L   + +  + G    I+ADEMGLGKT+Q I L+  L+      
Sbjct: 749  MVNGVLKQYQIKGLEWLVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRIN 803

Query: 208  KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265
             P +    ++ P S + NW  E  KW     ++         +  + Q   G  N     
Sbjct: 804  GPFL----IIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFN----- 854

Query: 266  VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324
                +L+ +YE       +L K     +I DEGHR+KN   +  Q L++   + RR+L++
Sbjct: 855  ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT 910

Query: 325  GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383
            GTP+QN L E ++L++F+   I  +   F++ F  P  + G     +E +  L    +R 
Sbjct: 911  GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL---IIRR 967

Query: 384  LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437
            L  ++   L+RR    +   LP K+E V+ C ++ LQ  LY+    QAK       +E+ 
Sbjct: 968  LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM--QAKGVLLTDGSEKD 1025

Query: 438  LEGKMSVSSL-SSITSLKKLCNHPALIY--DKCVEEEDGFVGA----LDLFPPGYSSKAL 490
             +GK    +L ++I  L+K+CNHP +    ++   E  GF G     LDL+         
Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY--------- 1076

Query: 491  EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550
              + SGK  +LD IL   R+ ++ KV+L    T  + + E     R + Y+RLDGT   +
Sbjct: 1077 --RASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 551  KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610
             R  +++ FN P S  F+F+LS++AGG GLNL  A+ +++FD DWNP  D QA  R  R 
Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193

Query: 611  GQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVV 646
            GQ+    + RL +  ++EEKI     +K  +   V+
Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,032,537
Number of Sequences: 37866
Number of extensions: 1379883
Number of successful extensions: 3365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3062
Number of HSP's gapped (non-prelim): 109
length of query: 747
length of database: 18,247,518
effective HSP length: 110
effective length of query: 637
effective length of database: 14,082,258
effective search space: 8970398346
effective search space used: 8970398346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press