BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|216548193 RAD54-like protein [Homo sapiens] (747 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|216548193 RAD54-like protein [Homo sapiens] 1506 0.0 gi|216548186 RAD54-like protein [Homo sapiens] 1506 0.0 gi|6912622 RAD54 homolog B [Homo sapiens] 483 e-136 gi|4557565 excision repair cross-complementing rodent repair def... 276 4e-74 gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 251 2e-66 gi|168823443 RAD54-like 2 [Homo sapiens] 246 4e-65 gi|58219008 RAD26L hypothetical protein [Homo sapiens] 236 4e-62 gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 234 2e-61 gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 228 2e-59 gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 226 6e-59 gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 224 3e-58 gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 221 1e-57 gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 221 2e-57 gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 220 3e-57 gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 220 4e-57 gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 218 2e-56 gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 218 2e-56 gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 218 2e-56 gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 217 3e-56 gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 217 3e-56 gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 214 2e-55 gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 212 1e-54 gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 211 2e-54 gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 211 2e-54 gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 211 2e-54 gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 211 2e-54 gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 211 2e-54 gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 209 6e-54 gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 209 6e-54 gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 209 6e-54 >gi|216548193 RAD54-like protein [Homo sapiens] Length = 747 Score = 1506 bits (3900), Expect = 0.0 Identities = 747/747 (100%), Positives = 747/747 (100%) Query: 1 MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTN 60 MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTN Sbjct: 1 MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTN 60 Query: 61 QPPCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVL 120 QPPCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVL Sbjct: 61 QPPCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVL 120 Query: 121 YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI 180 YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI Sbjct: 121 YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI 180 Query: 181 MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP 240 MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP Sbjct: 181 MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP 240 Query: 241 LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR 300 LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR Sbjct: 241 LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR 300 Query: 301 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP 360 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP Sbjct: 301 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP 360 Query: 361 ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 420 ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ Sbjct: 361 ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 420 Query: 421 TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL 480 TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL Sbjct: 421 TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL 480 Query: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 540 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY Sbjct: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 540 Query: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND Sbjct: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600 Query: 601 EQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGE 660 EQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGE Sbjct: 601 EQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGE 660 Query: 661 LKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVL 720 LKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVL Sbjct: 661 LKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVL 720 Query: 721 QAAWDAASTAITFVFHQRSHEEQRGLR 747 QAAWDAASTAITFVFHQRSHEEQRGLR Sbjct: 721 QAAWDAASTAITFVFHQRSHEEQRGLR 747 >gi|216548186 RAD54-like protein [Homo sapiens] Length = 747 Score = 1506 bits (3900), Expect = 0.0 Identities = 747/747 (100%), Positives = 747/747 (100%) Query: 1 MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTN 60 MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTN Sbjct: 1 MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTN 60 Query: 61 QPPCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVL 120 QPPCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVL Sbjct: 61 QPPCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVL 120 Query: 121 YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI 180 YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI Sbjct: 121 YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI 180 Query: 181 MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP 240 MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP Sbjct: 181 MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP 240 Query: 241 LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR 300 LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR Sbjct: 241 LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR 300 Query: 301 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP 360 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP Sbjct: 301 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP 360 Query: 361 ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 420 ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ Sbjct: 361 ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 420 Query: 421 TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL 480 TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL Sbjct: 421 TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL 480 Query: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 540 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY Sbjct: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 540 Query: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND Sbjct: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600 Query: 601 EQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGE 660 EQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGE Sbjct: 601 EQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGE 660 Query: 661 LKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVL 720 LKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVL Sbjct: 661 LKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVL 720 Query: 721 QAAWDAASTAITFVFHQRSHEEQRGLR 747 QAAWDAASTAITFVFHQRSHEEQRGLR Sbjct: 721 QAAWDAASTAITFVFHQRSHEEQRGLR 747 >gi|6912622 RAD54 homolog B [Homo sapiens] Length = 910 Score = 483 bits (1244), Expect = e-136 Identities = 277/589 (47%), Positives = 372/589 (63%), Gaps = 31/589 (5%) Query: 110 HDPLEKDALVLYEPPPLSAHDQLKLDKEKLP-VHVVVDPILSKVLRPHQREGVKFLWECV 168 HDP ++LV+ P + Q +K P V VV+DP L LRPHQ+EG+ FL+ECV Sbjct: 255 HDPYTPNSLVMPRP---DKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECV 311 Query: 169 TSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC-KPEIDKAVVVSPSSLVKNWY 227 R+ G G I+ADEMGLGKTLQCI+L+WTL Q P KP I K ++V+P SLV NW Sbjct: 312 MGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWK 371 Query: 228 NEVGKWLGG-RIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQ 286 E KWLG RI+ +D D K+E F+ + +LIISYE + ++ Sbjct: 372 KEFQKWLGSERIKIFTVDQ------DHKVEEFIKS----IFYSVLIISYEMLLRSLDQIK 421 Query: 287 KGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGI 346 L+ICDEGHRLKNS +T AL SL+ +R++++GTPIQNDL E+F+L+ FVN GI Sbjct: 422 NIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGI 481 Query: 347 LGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPV 406 LG+ ++K +E PI+ R+ +ASE +++LGE R ELT + ++RRT +I++KYLP Sbjct: 482 LGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPP 541 Query: 407 KIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSS-LSSITSLKKLCNHPALIYD 465 KIE VV CR LQ ELY++ L ++ L+G + S L I +LKKLCNHP L+++ Sbjct: 542 KIENVVFCRPGALQIELYRKLLN-SQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFN 600 Query: 466 KCVEEEDG-----------FVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRS-RSS 513 E+E + G L +FP Y+ + SGK+ VL +LAV R + Sbjct: 601 SIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPT 660 Query: 514 DKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS 573 +KVVLVSNYTQTL++ +++C+ Y Y RLDG I +R ++V+ FNS S F+F+LSS Sbjct: 661 EKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSS 720 Query: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQ 633 KAGG GLNLIG + L+++D DWNPA D QAM+RVWRDGQK +IYRLL+ GTIEEKI+Q Sbjct: 721 KAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQ 780 Query: 634 RQSHKKALSSCVVDEEQDVER-HFSLGELKELFILDEASLSDTHDRLHC 681 RQ K+ L VVD + E FS+ ELK LF L E+S THD L C Sbjct: 781 RQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTLHESSDCVTHDLLDC 829 >gi|4557565 excision repair cross-complementing rodent repair deficiency, complementation group 6 [Homo sapiens] Length = 1493 Score = 276 bits (707), Expect = 4e-74 Identities = 193/548 (35%), Positives = 285/548 (52%), Gaps = 48/548 (8%) Query: 145 VDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL---- 200 V L K L +Q+ GV++LWE + G I+ DEMGLGKT+Q I + L Sbjct: 499 VPGFLFKKLFKYQQTGVRWLWELHCQQA-----GGILGDEMGLGKTIQIIAFLAGLSYSK 553 Query: 201 --LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGF 258 R S + V+V P++++ W E W + + GS +KL Sbjct: 554 IRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLI-- 611 Query: 259 MNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS 318 R ILI SY RL + + VI DEGH+++N A T Sbjct: 612 ---RDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTP 668 Query: 319 RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGE 378 R+++SG+P+QN+L E +SL F+ G LGT F + F +PI G + AS + Sbjct: 669 HRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAY 728 Query: 379 ERLRELTSIVNRCLIRRT-SDI-LSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEE 436 + L +N L+RR SD+ +S LP K EQV+ CRLT Q ++Y+ F+ +K Sbjct: 729 KCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFV-DSKEVYR 787 Query: 437 LLEGKMSVSSLSSITSLKKLCNHPALIYDKCVE---------EEDGFVGALDLFPPGYSS 487 +L G+M + S + +L+K+CNHP L EED F GY Sbjct: 788 ILNGEMQI--FSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQF---------GYWK 836 Query: 488 KALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTM 547 + SGKM+V++ +L + + +V+L S Q LD+ E RA++Y Y+++DGT Sbjct: 837 R------SGKMIVVESLLKIWH-KQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTT 889 Query: 548 SIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARV 607 +I R ++ R+N +S FVF+L+++ GG G+NL GANR+V++DPDWNP+ D QA R Sbjct: 890 TIASRQPLITRYNEDTSI-FVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERA 948 Query: 608 WRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFIL 667 WR GQKK +YRLL+AGTIEEKI+ RQ K+ L++ V+ + + R F +L ELF L Sbjct: 949 WRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQ-RRFFKSNDLYELFTL 1007 Query: 668 DEASLSDT 675 S + Sbjct: 1008 TSPDASQS 1015 >gi|58331268 excision repair protein ERCC6-like [Homo sapiens] Length = 1250 Score = 251 bits (640), Expect = 2e-66 Identities = 182/570 (31%), Positives = 294/570 (51%), Gaps = 58/570 (10%) Query: 149 LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECK 208 L L HQ+EG+ FL+ G G I+AD+MGLGKT+Q I + + S Sbjct: 92 LHNQLFEHQKEGIAFLYSLYRD----GRKGGILADDMGLGKTVQIIAFLSGMFDASL--- 144 Query: 209 PEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSS 268 ++ +++ P++L+ W E KW G ++ G SKDE + L + G +++ Sbjct: 145 --VNHVLLIMPTNLINTWVKEFIKWTPG-MRVKTFHGPSKDERTRNLNRIQQRNGVIITT 201 Query: 269 -PILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTP 327 +LI +++ G Q+ VI DE H++K S ++ ++ S R+L++GTP Sbjct: 202 YQMLINNWQQLSSFRG--QEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTP 259 Query: 328 IQNDLLEYFSLVHFVNSG-ILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTS 386 IQN+L E +SL F G +LGT FK +E PI + R+ A+ ++ LG + L + Sbjct: 260 IQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMA 319 Query: 387 IVNRCLIRRTSDILSKY------------------------LPVKIEQVVCCRLTPLQTE 422 I+ +RRT + + K L K + ++ RL PLQ E Sbjct: 320 IIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEE 379 Query: 423 LYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCV--------EEEDGF 474 +Y++F+ E L+E + S L+ + LKKLC+HP L+ + +DG Sbjct: 380 IYRKFVSLDHIKELLMETR---SPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGN 436 Query: 475 VGALDLFPPGYSSKALEPQL---SGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEK 531 G D + + + L SGKM+ L +L R +V S Q L++ E+ Sbjct: 437 EGE-DSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVF-SQSRQILNIIER 494 Query: 532 LCRARRYLYVRLDGTMS-IKKRAKVVERFNSPSSPDF-VFMLSSKAGGCGLNLIGANRLV 589 L + R + +R+DGT++ + +R K + F + D+ VF+L+++ GG GL L A R+V Sbjct: 495 LLKNRHFKTLRIDGTVTHLLEREKRINLFQQ--NKDYSVFLLTTQVGGVGLTLTAATRVV 552 Query: 590 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEE 649 +FDP WNPA D QA+ RV+R GQK+ +YRL++ GT+EEKI++RQ K +L E+ Sbjct: 553 IFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEK 612 Query: 650 QDVERHFSLGELKELFILDEASLSDTHDRL 679 ++ R+FS EL+ELF +++ S T +L Sbjct: 613 KNPFRYFSKQELRELFTIEDLQNSVTQLQL 642 >gi|168823443 RAD54-like 2 [Homo sapiens] Length = 1467 Score = 246 bits (629), Expect = 4e-65 Identities = 186/642 (28%), Positives = 293/642 (45%), Gaps = 145/642 (22%) Query: 142 HVVVDPILSKVLRPHQREGVKFLW----ECVTSRRIPGSHGCIMADEMGLGKTLQCITLM 197 +V + P L++ ++PHQ G++FL+ E + + GCI+A MGLGKTLQ I+ + Sbjct: 260 NVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFI 319 Query: 198 WTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQ---- 253 L R +P + + P + ++NW E WL P A+ +K E Q Sbjct: 320 DVLFRHTPA-----KTVLAIVPVNTLQNWLAEFNMWLP---PPEALPADNKPEEVQPRFF 371 Query: 254 KLEGFMNQRGARVSSP-----------ILIISYETFRL-------------------HVG 283 K+ ++ S +L++ YE +RL H Sbjct: 372 KVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPV 431 Query: 284 VLQ-------------------KGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLIS 324 ++ + +VICDEGHR+KN + T QAL ++ + RRV+++ Sbjct: 432 IIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLT 491 Query: 325 GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLREL 384 G P+QN+L+EY+ +V FV LGT EF FE PIL G+ ++ D +L R L Sbjct: 492 GYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVL 551 Query: 385 TSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSV 444 S++ + RR +L +LP K E V+ RL+ +Q +LY +F+ + + G + + Sbjct: 552 HSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCGS--SGWLGL 609 Query: 445 SSLSSITSLKKLCNHPALIYDKCVE-----------EEDGFVGALDLFPP-GYSSKALEP 492 + L + K+ NHP ++Y+ + EE G G PP G K + Sbjct: 610 NPLKAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGKGEDS 669 Query: 493 QLSGKM-----------------------------------------------LVLDYIL 505 L+ M +VL + L Sbjct: 670 TLASSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHL 729 Query: 506 AVTRSRSSDKVVLVSNYTQTLDLFEKLCR------------------ARRYLYVRLDGTM 547 + DK+++ S TL L E+ R Y RLDG+ Sbjct: 730 IEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGST 789 Query: 548 SIKKRAKVVERFNSPSS-PDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 606 +R +++ +FN PS+ ++F+LS++AG G+NLIGANR+V+FD WNP +D QA+ R Sbjct: 790 PAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCR 849 Query: 607 VWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648 V+R GQKK CYIYRL++ T+E+KI+ RQ K+ +S VVD+ Sbjct: 850 VYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 891 >gi|58219008 RAD26L hypothetical protein [Homo sapiens] Length = 712 Score = 236 bits (603), Expect = 4e-62 Identities = 169/566 (29%), Positives = 284/566 (50%), Gaps = 77/566 (13%) Query: 149 LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLL------- 201 +++ LR +QREG +FL+ I G GCI+ D+MGLGKT+Q I+ + +L Sbjct: 130 INRYLRDYQREGTRFLY----GHYIHGG-GCILGDDMGLGKTVQVISFLAAVLHKKGTRE 184 Query: 202 --------------RQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGS 247 ++ P ++V+P S++ NW +E+ W G + + G Sbjct: 185 DIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW--GYFRVTVLHGNR 242 Query: 248 KDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQ 307 KD +++ QR ++ + +YET RL + L VI DE HR+KN + + Sbjct: 243 KDNELIRVK----QRKCEIA----LTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKAR 294 Query: 308 TYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDA 367 + + +L + R+ ++GT +QN++ E + ++ + G+LG+ FKK F P+ G+ Sbjct: 295 VTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRH 354 Query: 368 AASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRF 427 A++ + G + ++ L ++ +RRT ++ LP K +++V C LT Q +Y+ Sbjct: 355 TATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTV 414 Query: 428 LRQAKPAEELLEGK------------------------MSVSSLSSITSLKKLCNHPALI 463 L + + +L+ + LS +T L+K+ NH AL+ Sbjct: 415 L-ETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALL 473 Query: 464 YDKCVEEE---------DGFVGALDLFPPGYSSKALE----PQLSGKMLVLDYILAVTRS 510 ++ D F A E P+ SGKM VL +L R Sbjct: 474 QAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCR- 532 Query: 511 RSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFM 570 ++ DKV+L S T+ LD+ ++ C A Y RLDG+ ++R K+V+ FNS + + + Sbjct: 533 KNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVN-ICL 591 Query: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEK 630 +S+ AGG GLN +GAN +V+FDP WNPAND QA+ R +R GQ + + RL+S GT+EE Sbjct: 592 VSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEI 651 Query: 631 IFQRQSHKKALSSCVVDEEQDVERHF 656 ++ RQ +K+ L CVV ++ +R+F Sbjct: 652 MYLRQIYKQQL-HCVVVGSENAKRYF 676 >gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa [Homo sapiens] Length = 1849 Score = 234 bits (597), Expect = 2e-61 Identities = 180/584 (30%), Positives = 288/584 (49%), Gaps = 58/584 (9%) Query: 130 DQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGK 189 D KL+ K+PV + + LR +Q++GV +L + ++ G I+ D+MGLGK Sbjct: 1249 DGKKLENYKIPVPINAE------LRKYQQDGVNWL-AFLNKYKLHG----ILCDDMGLGK 1297 Query: 190 TLQCITLMWT---------LLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGR-IQ 239 TLQ I ++ + EC P ++VV P +L +W +EVGK+ + Sbjct: 1298 TLQSICILAGDHCHRAQEYARSKLAECMPL--PSLVVCPPTLTGHWVDEVGKFCSREYLN 1355 Query: 240 PLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGH 299 PL G + I +L+ + + +++ SY+ R + + I DEGH Sbjct: 1356 PLHYTGPPTERI--RLQHQVKRHN------LIVASYDVVRNDIDFFRNIKFNYCILDEGH 1407 Query: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFEL 359 +KN + + +A+ L + R+++SGTPIQN++LE +SL F+ G LGT +F + Sbjct: 1408 VIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGK 1467 Query: 360 PILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPL 419 PIL RDA +S +++ G + L V L+RR + + + LP KI Q C L+PL Sbjct: 1468 PILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPL 1527 Query: 420 QTELYKRFLR------------QAKPAEELLEGKMSVSS--LSSITSLKKLCNHPALIYD 465 Q +LY+ F + A +EE + K+ + ++ L+KLCNHPAL+ Sbjct: 1528 QVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLT 1587 Query: 466 KCVEEEDGFVGALDLFPPGYSSKALEPQLSG-KMLVLDYILAVTRSRSS--------DKV 516 E L + P+LS K L+LD L + S ++ Sbjct: 1588 PQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRI 1647 Query: 517 VLVSNYTQTLDLFE-KLCRAR--RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS 573 ++ LD+ E L + Y+RLDG++ +R +V RFN+ S D V +L++ Sbjct: 1648 LIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSID-VLLLTT 1706 Query: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQ 633 GG GLNL GA+ +V + DWNP D QAM R R GQK+ +YRL++ GT+EEKI Sbjct: 1707 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1766 Query: 634 RQSHKKALSSCVVDEEQDVERHFSLGELKELFILDEASLSDTHD 677 Q K +++ V+ +E + +L +LF LD+ ++ D Sbjct: 1767 LQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKAD 1810 >gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1 [Homo sapiens] Length = 1828 Score = 228 bits (580), Expect = 2e-59 Identities = 165/497 (33%), Positives = 252/497 (50%), Gaps = 43/497 (8%) Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212 LR +Q EG+ +L ++ I+ADEMGLGKT+Q I+ + L Q P + Sbjct: 484 LRDYQLEGLNWLAHSWCK-----NNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFL- 537 Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILI 272 +V P S + +W E W I + G + +++ + R+ LI Sbjct: 538 ---IVVPLSTLTSWQREFEIW-APEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 593 Query: 273 ISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDL 332 +YE VL + + DE HRLKN ++ Y+ L ++ R+LI+GTP+QN L Sbjct: 594 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 653 Query: 333 LEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCL 392 E +SL+HF I+ EF + FE KGR E + L ++ L Sbjct: 654 KELWSLLHF----IMPEKFEFWEDFEEDHGKGR------------ENGYQSLHKVLEPFL 697 Query: 393 IRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSS--LSSI 450 +RR + K LP K+EQ++ ++ LQ + YK L + A L +G +S L+ + Sbjct: 698 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKA--LAKGTRGSTSGFLNIV 755 Query: 451 TSLKKLCNHPALIYD-KCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTR 509 LKK CNH LI + E E+G L L + SGK+++LD +L R Sbjct: 756 MELKKCCNHCYLIKPPEENERENGQEILLSLI-----------RSSGKLILLDKLLTRLR 804 Query: 510 SRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVF 569 R + +V++ S + LD+ + + Y + RLDG++ + R + ++ FN+ S DF F Sbjct: 805 ERGN-RVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF 863 Query: 570 MLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEE 629 +LS++AGG G+NL A+ +V+FD DWNP ND QA AR R GQKK IYRL++ GT+EE Sbjct: 864 LLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEE 923 Query: 630 KIFQRQSHKKALSSCVV 646 +I +R K L V+ Sbjct: 924 EIIERAKKKMVLDHLVI 940 >gi|164419749 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a1 isoform b [Homo sapiens] Length = 1042 Score = 226 bits (576), Expect = 6e-59 Identities = 165/505 (32%), Positives = 260/505 (51%), Gaps = 47/505 (9%) Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212 LR +Q G+ +L + G +G I+ADEMGLGKTLQ I L+ L P + Sbjct: 183 LRDYQIRGLNWLISLYEN----GVNG-ILADEMGLGKTLQTIALLGYLKHYRNIPGPHM- 236 Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILI 272 V+ P S + NW NE +W+ + G KD F+ + + Sbjct: 237 ---VLVPKSTLHNWMNEFKRWVPSLRVICFV--GDKDA----RAAFIRDEMMPGEWDVCV 287 Query: 273 ISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDL 332 SYE V +K ++ DE HR+KN +++ + + ++ R+L++GTP+QN+L Sbjct: 288 TSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNL 347 Query: 333 LEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRE-LTSIVNRC 391 E ++L++F+ + +A +F F+ LG+++L E L +++ Sbjct: 348 HELWALLNFLLPDVFNSADDFDSWFD-------------TKNCLGDQKLVERLHAVLKPF 394 Query: 392 LIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEEL-LEGKMSVSSLSSI 450 L+RR + K LP K E + L+ +Q E Y + L K + L GKM L +I Sbjct: 395 LLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILM--KDIDVLNSSGKMDKMRLLNI 452 Query: 451 T-SLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTR 509 L+K CNHP L F GA P Y++ SGKM+VLD +LA + Sbjct: 453 LMQLRKCCNHPYL-----------FDGAEP--GPPYTTDEHIVSNSGKMVVLDKLLAKLK 499 Query: 510 SRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVF 569 + S +V++ S T+ LD+ E C R Y Y RLDG ++R + +E FN+P+S F+F Sbjct: 500 EQGS-RVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAPNSSKFIF 558 Query: 570 MLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEE 629 MLS++AGG G+NL A+ ++++D DWNP D QAM R R GQKK ++RL++ T+EE Sbjct: 559 MLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEE 618 Query: 630 KIFQRQSHKKALSSCVVDEEQDVER 654 +I +R K L S V+ + + +++ Sbjct: 619 RIVERAEIKLRLDSIVIQQGRLIDQ 643 >gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sapiens] Length = 2881 Score = 224 bits (570), Expect = 3e-58 Identities = 164/522 (31%), Positives = 263/522 (50%), Gaps = 44/522 (8%) Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212 LR +Q EG+ +L +RR CI+ADEMGLGKT+Q IT ++ +L Sbjct: 860 LREYQLEGLNWLLFNWYNRR-----NCILADEMGLGKTIQSITFLYEILLTGIR-----G 909 Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGG--SKDEIDQKLEGFMNQRGARVSSPI 270 ++++P S + NW E W I + G S+ I Q F + +G + Sbjct: 910 PFLIIAPLSTIANWEREFRTWTD--INVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAY 967 Query: 271 ----LIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGT 326 +I ++E G L VI DE HRLKN + + L +N +VL++GT Sbjct: 968 RFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGT 1027 Query: 327 PIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTS 386 P+QN + E FSL+HF+ + F + F D + EE++++L + Sbjct: 1028 PLQNTVEELFSLLHFLEPLRFPSESTFMQEF--------------GDLKT-EEQVQKLQA 1072 Query: 387 IVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSS 446 I+ ++RR + + K L K E ++ LT +Q + Y+ L + G+ +V + Sbjct: 1073 ILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPN 1132 Query: 447 L-SSITSLKKLCNHPALIYDKCVEEEDGFVGAL-DLFPPGYSSKALEP--QLSGKMLVLD 502 L +++ L+K CNHP LI K EE+ +G D + P S L+ Q +GK++++D Sbjct: 1133 LVNTMMELRKCCNHPYLI--KGAEEK--ILGEFRDTYNPAASDFHLQAMIQSAGKLVLID 1188 Query: 503 YILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSP 562 +L ++ KV++ S + LD+ E +RYLY R+DG + R ++RF+ P Sbjct: 1189 KLLPKMKA-GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKP 1247 Query: 563 SSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 622 S FVF+L ++AGG G+NL A+ ++FD DWNP ND QA AR R GQ K +YRL+ Sbjct: 1248 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLV 1307 Query: 623 SAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKEL 664 + + E ++F R S K L V+ R ++G +++L Sbjct: 1308 TRNSYEREMFDRASLKLGLDKAVLQSMSG--RESNVGGIQQL 1347 >gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sapiens] Length = 1912 Score = 221 bits (564), Expect = 1e-57 Identities = 161/549 (29%), Positives = 263/549 (47%), Gaps = 53/549 (9%) Query: 113 LEKDALVLYEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRR 172 L+K L E PP + + E+ P ++ L P+Q EG+ +L R Sbjct: 689 LKKVKLRKLERPPETPTVDPTVKYERQPEYL---DATGGTLHPYQMEGLNWL-------R 738 Query: 173 IPGSHGC--IMADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEV 230 + G I+ADEMGLGKT+Q +++L ++ P + V +P S + NW E Sbjct: 739 FSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFL----VSAPLSTIINWEREF 794 Query: 231 GKW---------LGGRIQPLAIDGGSKDEIDQKLEGFMN----QRGARVSSPILIISYET 277 W +G + I D + G ++ A V +L+ SYE Sbjct: 795 EMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYEL 854 Query: 278 FRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFS 337 + + +L +I DE HRLKN++++ ++ L+ + ++L++GTP+QN+L E F Sbjct: 855 ITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFH 914 Query: 338 LVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTS 397 L++F+ F + F D A E+++++L ++ ++RR Sbjct: 915 LLNFLTPERFHNLEGFLEEFA-------DIAK--------EDQIKKLHDMLGPHMLRRLK 959 Query: 398 DILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLC 457 + K +P K E +V L+P+Q + YK L + A G VS L+ + LKK C Sbjct: 960 ADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCC 1019 Query: 458 NHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVV 517 NHP L +E P G + + SGK+L+L +L + +V+ Sbjct: 1020 NHPYLFPVAAMEAPK--------MPNGMYDGSALIRASGKLLLLQKMLKNLKE-GGHRVL 1070 Query: 518 LVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGG 577 + S T+ LDL E Y Y R+DG ++ R + ++RFN+P + F F+LS++AGG Sbjct: 1071 IFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGG 1130 Query: 578 CGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSH 637 G+NL A+ ++++D DWNP ND QA +R R GQ K IYR ++ ++EE+I Q Sbjct: 1131 LGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1190 Query: 638 KKALSSCVV 646 K L+ VV Sbjct: 1191 KMMLTHLVV 1199 >gi|21071058 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a5 [Homo sapiens] Length = 1052 Score = 221 bits (563), Expect = 2e-57 Identities = 167/515 (32%), Positives = 263/515 (51%), Gaps = 61/515 (11%) Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212 LR +Q G+ +L + G +G I+ADEMGLGKTLQ I+L+ + P + Sbjct: 180 LRDYQVRGLNWLISLYEN----GING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHM- 233 Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPIL- 271 V+ P S + NW +E +W+ ++ + + G + QR A V +L Sbjct: 234 ---VLVPKSTLHNWMSEFKRWVP-TLRSVCLIGDKE------------QRAAFVRDVLLP 277 Query: 272 ------IISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISG 325 + SYE V +K + ++ DE HR+KN +++ + + T+ R+L++G Sbjct: 278 GEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 337 Query: 326 TPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELT 385 TP+QN+L E +SL++F+ + +A +F F+ + LG+++L E Sbjct: 338 TPLQNNLHELWSLLNFLLPDVFNSADDFDSWFD-------------TNNCLGDQKLVERL 384 Query: 386 SIVNR-CLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLE-GKMS 443 +V R L+RR + K LP K E + L+ +Q E Y R L K + L GKM Sbjct: 385 HMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILM--KDIDILNSAGKMD 442 Query: 444 VSSLSSIT-SLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLD 502 L +I L+K CNHP L F GA P Y++ SGKM+VLD Sbjct: 443 KMRLLNILMQLRKCCNHPYL-----------FDGAEP--GPPYTTDMHLVTNSGKMVVLD 489 Query: 503 YILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSP 562 +L + + S +V++ S T+ LD+ E C R Y Y RLDG +R + +N P Sbjct: 490 KLLPKLKEQGS-RVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEP 548 Query: 563 SSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 622 +S FVFMLS++AGG G+NL A+ ++++D DWNP D QAM R R GQ KT ++R + Sbjct: 549 NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFI 608 Query: 623 SAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFS 657 + T+EE+I +R K L S V+ + + V+++ + Sbjct: 609 TDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLN 643 >gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sapiens] Length = 1710 Score = 220 bits (561), Expect = 3e-57 Identities = 156/500 (31%), Positives = 255/500 (51%), Gaps = 49/500 (9%) Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212 LR +Q G+ +L + CI+ADEMGLGKT+Q I+ + L + P + Sbjct: 481 LRDYQLNGLNWLAHSWCK-----GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFL- 534 Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILI 272 +V P S + +W E+ W ++ + G + + + + R+ IL+ Sbjct: 535 ---LVVPLSTLTSWQREIQTW-ASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILL 590 Query: 273 ISYETF---RLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQ 329 +YE + +G L +G+ DE HRLKN ++ Y+ L ++ R+LI+GTP+Q Sbjct: 591 TTYEILLKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 647 Query: 330 NDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVN 389 N L E +SL+HF+ + +F++ KGR+ + ++L Sbjct: 648 NSLKELWSLLHFIMPEKFSSWEDFEEEHG----KGREYGYASLHKEL------------E 691 Query: 390 RCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFL-RQAKPAEELLEGKMSVSSLS 448 L+RR + K LP K+EQ++ ++ LQ + YK L R K + +G S L+ Sbjct: 692 PFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTS-GFLN 750 Query: 449 SITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQL--SGKMLVLDYILA 506 + LKK CNH LI + + F +AL+ + SGK+++LD +L Sbjct: 751 IMMELKKCCNHCYLIKPP---DNNEFYN---------KQEALQHLIRSSGKLILLDKLLI 798 Query: 507 VTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPD 566 R R + +V++ S + LD+ + + R++ + RLDG++ + R + ++ FN+ S D Sbjct: 799 RLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 857 Query: 567 FVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGT 626 F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R GQKK IYRL++ G+ Sbjct: 858 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 917 Query: 627 IEEKIFQRQSHKKALSSCVV 646 +EE I +R K L V+ Sbjct: 918 VEEDILERAKKKMVLDHLVI 937 >gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sapiens] Length = 1954 Score = 220 bits (560), Expect = 4e-57 Identities = 161/544 (29%), Positives = 262/544 (48%), Gaps = 63/544 (11%) Query: 131 QLKLDK-EKLPVHVVVDPILS------------KVLRPHQREGVKFLWECVTSRRIPGSH 177 +L+ DK EK P +VDP + L P+Q EG+ +L R + Sbjct: 665 KLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWL-------RFSWAQ 717 Query: 178 GC--IMADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWL- 234 G I+ADEMGLGKT+Q I +++L ++ P + V +P S + NW E W Sbjct: 718 GTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYL----VSAPLSTIINWEREFEMWAP 773 Query: 235 --------GGRIQPLAIDGGSKDEIDQKLEG----FMNQRGARVSSPILIISYETFRLHV 282 G + I D + F ++ ++ +L+ SYE + Sbjct: 774 DFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQ 833 Query: 283 GVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFV 342 +L ++ DE HRLKN++++ ++ L+S ++L++GTP+QN+L E F L++F+ Sbjct: 834 AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL 893 Query: 343 NSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSK 402 F + F A S+ E+++++L ++ ++RR + K Sbjct: 894 TPERFNNLEGFLEEF---------ADISK------EDQIKKLHDLLGPHMLRRLKADVFK 938 Query: 403 YLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPAL 462 +P K E +V L+ +Q + YK L + A G VS L+ + LKK CNHP L Sbjct: 939 NMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYL 998 Query: 463 IYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNY 522 VE + P G + + SGK+++L +L R +V++ S Sbjct: 999 FPVAAVEAP--------VLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGH-RVLIFSQM 1049 Query: 523 TQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL 582 T+ LDL E Y Y R+DG ++ R + ++RFN+P + F F+LS++AGG G+NL Sbjct: 1050 TKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL 1109 Query: 583 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALS 642 A+ ++++D DWNP ND QA +R R GQ K IYR ++ ++EE+I Q K L+ Sbjct: 1110 ATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLT 1169 Query: 643 SCVV 646 VV Sbjct: 1170 HLVV 1173 >gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1 [Homo sapiens] Length = 2000 Score = 218 bits (554), Expect = 2e-56 Identities = 156/509 (30%), Positives = 250/509 (49%), Gaps = 50/509 (9%) Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGC--IMADEMGLGKTLQCITLMWTLLRQSPECKPE 210 L +Q EG+ +L R + G I+ADEMGLGKT+Q I +++L ++ P Sbjct: 736 LHMYQLEGLNWL-------RFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPF 788 Query: 211 IDKAVVVSPSSLVKNWYNEVGKWL---------GGRIQPLAIDGGSKDEIDQKLEG---- 257 + V +P S + NW E W G + I D ++G Sbjct: 789 L----VSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 844 Query: 258 FMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNT 317 F +R A+V +L+ SYE + L ++ DE HRLKN++++ ++ L+ Sbjct: 845 FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKI 904 Query: 318 SRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLG 377 ++L++GTP+QN+L E F L++F+ F + F A S+ Sbjct: 905 DHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF---------ADISK------ 949 Query: 378 EERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEEL 437 E+++++L ++ ++RR + K +P K E +V L+P+Q + YK L + A Sbjct: 950 EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNS 1009 Query: 438 LEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGK 497 G VS L+ + LKK CNHP L +E GA Y AL SGK Sbjct: 1010 RGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGA-------YEGGALIKS-SGK 1061 Query: 498 MLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVE 557 +++L +L + + +V++ S T+ LDL E Y Y R+DG ++ R + ++ Sbjct: 1062 LMLLQKMLRKLKEQGH-RVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAID 1120 Query: 558 RFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 617 RFN+P + F F+LS++AGG G+NL A+ +++FD DWNP ND QA +R R GQ Sbjct: 1121 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVM 1180 Query: 618 IYRLLSAGTIEEKIFQRQSHKKALSSCVV 646 IYR ++ ++EE+I Q K L+ VV Sbjct: 1181 IYRFVTRASVEERITQVAKRKMMLTHLVV 1209 >gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2 [Homo sapiens] Length = 1966 Score = 218 bits (554), Expect = 2e-56 Identities = 156/509 (30%), Positives = 250/509 (49%), Gaps = 50/509 (9%) Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGC--IMADEMGLGKTLQCITLMWTLLRQSPECKPE 210 L +Q EG+ +L R + G I+ADEMGLGKT+Q I +++L ++ P Sbjct: 736 LHMYQLEGLNWL-------RFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPF 788 Query: 211 IDKAVVVSPSSLVKNWYNEVGKWL---------GGRIQPLAIDGGSKDEIDQKLEG---- 257 + V +P S + NW E W G + I D ++G Sbjct: 789 L----VSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 844 Query: 258 FMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNT 317 F +R A+V +L+ SYE + L ++ DE HRLKN++++ ++ L+ Sbjct: 845 FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKI 904 Query: 318 SRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLG 377 ++L++GTP+QN+L E F L++F+ F + F A S+ Sbjct: 905 DHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF---------ADISK------ 949 Query: 378 EERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEEL 437 E+++++L ++ ++RR + K +P K E +V L+P+Q + YK L + A Sbjct: 950 EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNS 1009 Query: 438 LEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGK 497 G VS L+ + LKK CNHP L +E GA Y AL SGK Sbjct: 1010 RGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGA-------YEGGALIKS-SGK 1061 Query: 498 MLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVE 557 +++L +L + + +V++ S T+ LDL E Y Y R+DG ++ R + ++ Sbjct: 1062 LMLLQKMLRKLKEQGH-RVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAID 1120 Query: 558 RFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 617 RFN+P + F F+LS++AGG G+NL A+ +++FD DWNP ND QA +R R GQ Sbjct: 1121 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVM 1180 Query: 618 IYRLLSAGTIEEKIFQRQSHKKALSSCVV 646 IYR ++ ++EE+I Q K L+ VV Sbjct: 1181 IYRFVTRASVEERITQVAKRKMMLTHLVV 1209 >gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3 [Homo sapiens] Length = 2059 Score = 218 bits (554), Expect = 2e-56 Identities = 156/509 (30%), Positives = 250/509 (49%), Gaps = 50/509 (9%) Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGC--IMADEMGLGKTLQCITLMWTLLRQSPECKPE 210 L +Q EG+ +L R + G I+ADEMGLGKT+Q I +++L ++ P Sbjct: 795 LHMYQLEGLNWL-------RFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPF 847 Query: 211 IDKAVVVSPSSLVKNWYNEVGKWL---------GGRIQPLAIDGGSKDEIDQKLEG---- 257 + V +P S + NW E W G + I D ++G Sbjct: 848 L----VSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 903 Query: 258 FMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNT 317 F +R A+V +L+ SYE + L ++ DE HRLKN++++ ++ L+ Sbjct: 904 FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKI 963 Query: 318 SRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLG 377 ++L++GTP+QN+L E F L++F+ F + F A S+ Sbjct: 964 DHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF---------ADISK------ 1008 Query: 378 EERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEEL 437 E+++++L ++ ++RR + K +P K E +V L+P+Q + YK L + A Sbjct: 1009 EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNS 1068 Query: 438 LEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGK 497 G VS L+ + LKK CNHP L +E GA Y AL SGK Sbjct: 1069 RGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGA-------YEGGALIKS-SGK 1120 Query: 498 MLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVE 557 +++L +L + + +V++ S T+ LDL E Y Y R+DG ++ R + ++ Sbjct: 1121 LMLLQKMLRKLKEQGH-RVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAID 1179 Query: 558 RFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 617 RFN+P + F F+LS++AGG G+NL A+ +++FD DWNP ND QA +R R GQ Sbjct: 1180 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVM 1239 Query: 618 IYRLLSAGTIEEKIFQRQSHKKALSSCVV 646 IYR ++ ++EE+I Q K L+ VV Sbjct: 1240 IYRFVTRASVEERITQVAKRKMMLTHLVV 1268 >gi|114326455 chromodomain helicase DNA binding protein 8 [Homo sapiens] Length = 2302 Score = 217 bits (553), Expect = 3e-56 Identities = 154/501 (30%), Positives = 249/501 (49%), Gaps = 36/501 (7%) Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212 LR +Q EGV +L +R+ CI+ADEMGLGKT+Q I + + Sbjct: 532 LREYQLEGVNWLLFNWYNRQ-----NCILADEMGLGKTIQSIAFLQEVYNVGIH-----G 581 Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGG--SKDEIDQKLEGFMNQRGARVSSPI 270 +V++P S + NW E W + + G S+ I Q + RG + Sbjct: 582 PFLVIAPLSTITNWEREFNTWT--EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 639 Query: 271 ----LIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGT 326 LI ++E L++ VI DE HRLKN + +L ++ +VL++GT Sbjct: 640 KFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGT 699 Query: 327 PIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTS 386 P+QN + E FSL+HF+ + EF K F D + EE++++L + Sbjct: 700 PLQNTVEELFSLLHFLEPSQFPSESEFLKDF--------------GDLKT-EEQVQKLQA 744 Query: 387 IVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSS 446 I+ ++RR + + K L K E ++ LT +Q + Y+ L + G ++ + Sbjct: 745 ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPN 804 Query: 447 L-SSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYIL 505 L +++ L+K CNHP LI + F A + P + +A+ + +GK++++D +L Sbjct: 805 LLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMV-RSAGKLVLIDKLL 863 Query: 506 AVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSP 565 ++ KV++ S + LD+ E RRYLY R+DG + R ++RF+ P S Sbjct: 864 PKLKA-GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSD 922 Query: 566 DFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAG 625 FVF+L ++AGG G+NL A+ ++FD DWNP ND QA AR R GQ K +YRL++ Sbjct: 923 RFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRN 982 Query: 626 TIEEKIFQRQSHKKALSSCVV 646 + E ++F + S K L V+ Sbjct: 983 SYEREMFDKASLKLGLDKAVL 1003 >gi|21071044 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a1 isoform a [Homo sapiens] Length = 1054 Score = 217 bits (553), Expect = 3e-56 Identities = 165/517 (31%), Positives = 260/517 (50%), Gaps = 59/517 (11%) Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212 LR +Q G+ +L + G +G I+ADEMGLGKTLQ I L+ L P + Sbjct: 183 LRDYQIRGLNWLISLYEN----GVNG-ILADEMGLGKTLQTIALLGYLKHYRNIPGPHM- 236 Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILI 272 V+ P S + NW NE +W+ + G KD F+ + + Sbjct: 237 ---VLVPKSTLHNWMNEFKRWVPSLRVICFV--GDKDA----RAAFIRDEMMPGEWDVCV 287 Query: 273 ISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDL 332 SYE V +K ++ DE HR+KN +++ + + ++ R+L++GTP+QN+L Sbjct: 288 TSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNL 347 Query: 333 LEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRE-LTSIVNRC 391 E ++L++F+ + +A +F F+ LG+++L E L +++ Sbjct: 348 HELWALLNFLLPDVFNSADDFDSWFD-------------TKNCLGDQKLVERLHAVLKPF 394 Query: 392 LIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEEL-LEGKMSVSSLSSI 450 L+RR + K LP K E + L+ +Q E Y + L K + L GKM L +I Sbjct: 395 LLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILM--KDIDVLNSSGKMDKMRLLNI 452 Query: 451 T-SLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTR 509 L+K CNHP L F GA P Y++ SGKM+VLD +LA + Sbjct: 453 LMQLRKCCNHPYL-----------FDGAEP--GPPYTTDEHIVSNSGKMVVLDKLLAKLK 499 Query: 510 SRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRA------------KVVE 557 + S +V++ S T+ LD+ E C R Y Y RLDG ++R + +E Sbjct: 500 EQGS-RVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIE 558 Query: 558 RFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 617 FN+P+S F+FMLS++AGG G+NL A+ ++++D DWNP D QAM R R GQKK Sbjct: 559 AFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 618 Query: 618 IYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVER 654 ++RL++ T+EE+I +R K L S V+ + + +++ Sbjct: 619 VFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQ 655 >gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sapiens] Length = 2997 Score = 214 bits (545), Expect = 2e-55 Identities = 152/502 (30%), Positives = 251/502 (50%), Gaps = 38/502 (7%) Query: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212 LR +Q EGV +L + R CI+ADEMGLGKT+Q IT ++ + + Sbjct: 968 LREYQLEGVNWLLFNWYNMR-----NCILADEMGLGKTIQSITFLYEIYLKGIH-----G 1017 Query: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPI-- 270 +V++P S + NW E W + S+ I F + +G + Sbjct: 1018 PFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKF 1077 Query: 271 --LIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPI 328 +I ++E L+ V+ DE HRLKN + + L ++ +VL++GTP+ Sbjct: 1078 HAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPL 1137 Query: 329 QNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIV 388 QN + E FSL+HF+ + F + F D + EE++++L +I+ Sbjct: 1138 QNTVEELFSLLHFLEPSRFPSETTFMQEF--------------GDLKT-EEQVQKLQAIL 1182 Query: 389 NRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSL- 447 ++RR + + K L K E ++ LT +Q + Y+ L + G+ +V +L Sbjct: 1183 KPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLL 1242 Query: 448 SSITSLKKLCNHPALIY---DKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYI 504 +++ L+K CNHP LI +K +EE F + P + +A+ Q +GK++++D + Sbjct: 1243 NTMMELRKCCNHPYLINGAEEKILEE---FKETHNAESPDFQLQAMI-QAAGKLVLIDKL 1298 Query: 505 LAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSS 564 L ++ +V++ S + LD+ E RRY Y R+DG + R ++RF+ P S Sbjct: 1299 LPKLKA-GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDS 1357 Query: 565 PDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSA 624 FVF+L ++AGG G+NL A+ ++FD DWNP ND QA AR R GQ K+ IYRL++ Sbjct: 1358 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1417 Query: 625 GTIEEKIFQRQSHKKALSSCVV 646 + E ++F + S K L V+ Sbjct: 1418 NSYEREMFDKASLKLGLDKAVL 1439 >gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sapiens] Length = 2715 Score = 212 bits (539), Expect = 1e-54 Identities = 157/524 (29%), Positives = 257/524 (49%), Gaps = 43/524 (8%) Query: 150 SKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKP 209 S LR +Q EG+ +L +R+ CI+ADEMGLGKT+Q IT + + + Sbjct: 458 SNQLREYQLEGMNWLLFNWYNRK-----NCILADEMGLGKTIQSITFLSEIFLRGIH--- 509 Query: 210 EIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGG--SKDEIDQKLEGFMNQRGARVS 267 ++++P S + NW E W + + G S+ I Q + + +G +S Sbjct: 510 --GPFLIIAPLSTITNWEREFRTWT--EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLS 565 Query: 268 SP----ILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLI 323 ++I ++E L+K VI DE HRLKN + + L + +VL+ Sbjct: 566 GVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLL 625 Query: 324 SGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRE 383 +GTP+QN + E FSL++F+ + F + F D + EE++++ Sbjct: 626 TGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEF--------------GDLKT-EEQVKK 670 Query: 384 LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMS 443 L SI+ ++RR D + K L K E ++ LT +Q + Y+ L K L +G Sbjct: 671 LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILE--KNFSFLTKGANQ 728 Query: 444 VSS---LSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLV 500 + ++++ L+K CNHP LI + + F P + +A+ Q +GK+++ Sbjct: 729 HNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMI-QAAGKLVL 787 Query: 501 LDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFN 560 +D +L + KV++ S + LD+ E RRY Y R+DG + R ++RF Sbjct: 788 IDKLLPKLIA-GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFC 846 Query: 561 SPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 620 P S FVF+L ++AGG G+NL A+ ++FD DWNP ND QA AR R GQ K +YR Sbjct: 847 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 906 Query: 621 LLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKEL 664 L++ + E ++F + S K L V+ QD+ R +++L Sbjct: 907 LITRNSYEREMFDKASLKLGLDKAVL---QDINRKGGTNGVQQL 947 >gi|192807323 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform A [Homo sapiens] Length = 1679 Score = 211 bits (538), Expect = 2e-54 Identities = 168/552 (30%), Positives = 271/552 (49%), Gaps = 75/552 (13%) Query: 148 ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207 +++ VL+ +Q +G+++L + + + G I+ADEMGLGKT+Q I L+ L+ Sbjct: 749 MVNGVLKQYQIKGLEWLVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRIN 803 Query: 208 KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265 P + ++ P S + NW E KW ++ + + Q G N Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFN----- 854 Query: 266 VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324 +L+ +YE +L K +I DEGHR+KN + Q L++ + RR+L++ Sbjct: 855 ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT 910 Query: 325 GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383 GTP+QN L E ++L++F+ I + F++ F P + G +E + L +R Sbjct: 911 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL---IIRR 967 Query: 384 LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437 L ++ L+RR + LP K+E V+ C ++ LQ LY+ QAK +E+ Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM--QAKGVLLTDGSEKD 1025 Query: 438 LEGKMSVSSL-SSITSLKKLCNHPALIY--DKCVEEEDGFVGA----LDLFPPGYSSKAL 490 +GK +L ++I L+K+CNHP + ++ E GF G LDL+ Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY--------- 1076 Query: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550 + SGK +LD IL R+ ++ KV+L T + + E R + Y+RLDGT + Sbjct: 1077 --RASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133 Query: 551 KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610 R +++ FN P S F+F+LS++AGG GLNL A+ +++FD DWNP D QA R R Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193 Query: 611 GQKKTCYIYRLLSAGTIEEKIF---------------------QRQSHKKA--LSSCVVD 647 GQ+ + RL + ++EEKI + SH++ L + + Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEH 1253 Query: 648 EEQDVERHFSLG 659 EEQD RH S G Sbjct: 1254 EEQDESRHCSTG 1265 >gi|192807312 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform B [Homo sapiens] Length = 1647 Score = 211 bits (538), Expect = 2e-54 Identities = 168/552 (30%), Positives = 271/552 (49%), Gaps = 75/552 (13%) Query: 148 ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207 +++ VL+ +Q +G+++L + + + G I+ADEMGLGKT+Q I L+ L+ Sbjct: 749 MVNGVLKQYQIKGLEWLVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRIN 803 Query: 208 KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265 P + ++ P S + NW E KW ++ + + Q G N Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFN----- 854 Query: 266 VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324 +L+ +YE +L K +I DEGHR+KN + Q L++ + RR+L++ Sbjct: 855 ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT 910 Query: 325 GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383 GTP+QN L E ++L++F+ I + F++ F P + G +E + L +R Sbjct: 911 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL---IIRR 967 Query: 384 LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437 L ++ L+RR + LP K+E V+ C ++ LQ LY+ QAK +E+ Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM--QAKGVLLTDGSEKD 1025 Query: 438 LEGKMSVSSL-SSITSLKKLCNHPALIY--DKCVEEEDGFVGA----LDLFPPGYSSKAL 490 +GK +L ++I L+K+CNHP + ++ E GF G LDL+ Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY--------- 1076 Query: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550 + SGK +LD IL R+ ++ KV+L T + + E R + Y+RLDGT + Sbjct: 1077 --RASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133 Query: 551 KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610 R +++ FN P S F+F+LS++AGG GLNL A+ +++FD DWNP D QA R R Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193 Query: 611 GQKKTCYIYRLLSAGTIEEKIF---------------------QRQSHKKA--LSSCVVD 647 GQ+ + RL + ++EEKI + SH++ L + + Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEH 1253 Query: 648 EEQDVERHFSLG 659 EEQD RH S G Sbjct: 1254 EEQDESRHCSTG 1265 >gi|21071056 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform B [Homo sapiens] Length = 1647 Score = 211 bits (538), Expect = 2e-54 Identities = 168/552 (30%), Positives = 271/552 (49%), Gaps = 75/552 (13%) Query: 148 ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207 +++ VL+ +Q +G+++L + + + G I+ADEMGLGKT+Q I L+ L+ Sbjct: 749 MVNGVLKQYQIKGLEWLVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRIN 803 Query: 208 KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265 P + ++ P S + NW E KW ++ + + Q G N Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFN----- 854 Query: 266 VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324 +L+ +YE +L K +I DEGHR+KN + Q L++ + RR+L++ Sbjct: 855 ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT 910 Query: 325 GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383 GTP+QN L E ++L++F+ I + F++ F P + G +E + L +R Sbjct: 911 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL---IIRR 967 Query: 384 LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437 L ++ L+RR + LP K+E V+ C ++ LQ LY+ QAK +E+ Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM--QAKGVLLTDGSEKD 1025 Query: 438 LEGKMSVSSL-SSITSLKKLCNHPALIY--DKCVEEEDGFVGA----LDLFPPGYSSKAL 490 +GK +L ++I L+K+CNHP + ++ E GF G LDL+ Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY--------- 1076 Query: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550 + SGK +LD IL R+ ++ KV+L T + + E R + Y+RLDGT + Sbjct: 1077 --RASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133 Query: 551 KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610 R +++ FN P S F+F+LS++AGG GLNL A+ +++FD DWNP D QA R R Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193 Query: 611 GQKKTCYIYRLLSAGTIEEKIF---------------------QRQSHKKA--LSSCVVD 647 GQ+ + RL + ++EEKI + SH++ L + + Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEH 1253 Query: 648 EEQDVERHFSLG 659 EEQD RH S G Sbjct: 1254 EEQDESRHCSTG 1265 >gi|48255900 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform a [Homo sapiens] Length = 1590 Score = 211 bits (538), Expect = 2e-54 Identities = 159/514 (30%), Positives = 261/514 (50%), Gaps = 48/514 (9%) Query: 148 ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207 +++ L+ +Q +G++++ + + + G I+ADEMGLGKT+Q I L+ L+ Sbjct: 719 LINGTLKHYQLQGLEWMVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRLN 773 Query: 208 KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265 P + ++ P S + NW E KW +I + + Q G N Sbjct: 774 GPYL----IIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFN----- 824 Query: 266 VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324 +L+ +YE +L K +I DEGHR+KN + Q L++ + RR+L++ Sbjct: 825 ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 880 Query: 325 GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383 GTP+QN L E ++L++F+ I + F++ F P + G +E + L +R Sbjct: 881 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETIL---IIRR 937 Query: 384 LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437 L ++ L+RR + LP K+E V+ C ++ LQ LY+ QAK +E+ Sbjct: 938 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM--QAKGILLTDGSEKD 995 Query: 438 LEGKMSVSSL-SSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEP---- 492 +GK +L ++I L+K+CNHP + E+ F L GYS+ + Sbjct: 996 KKGKGGAKTLMNTIMQLRKICNHPYMFQ----HIEESFAEHL-----GYSNGVINGAELY 1046 Query: 493 QLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKR 552 + SGK +LD IL R+ ++ +V+L T + + E R +LY+RLDGT + R Sbjct: 1047 RASGKFELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDR 1105 Query: 553 AKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQ 612 A ++++FN P S F+F+LS++AGG GLNL A+ +V+FD DWNP D QA R R GQ Sbjct: 1106 AALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQ 1165 Query: 613 KKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVV 646 + + RL + ++EEKI +K + V+ Sbjct: 1166 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1199 >gi|48255898 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform b [Homo sapiens] Length = 1572 Score = 211 bits (538), Expect = 2e-54 Identities = 159/514 (30%), Positives = 261/514 (50%), Gaps = 48/514 (9%) Query: 148 ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207 +++ L+ +Q +G++++ + + + G I+ADEMGLGKT+Q I L+ L+ Sbjct: 719 LINGTLKHYQLQGLEWMVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRLN 773 Query: 208 KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265 P + ++ P S + NW E KW +I + + Q G N Sbjct: 774 GPYL----IIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFN----- 824 Query: 266 VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324 +L+ +YE +L K +I DEGHR+KN + Q L++ + RR+L++ Sbjct: 825 ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 880 Query: 325 GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383 GTP+QN L E ++L++F+ I + F++ F P + G +E + L +R Sbjct: 881 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETIL---IIRR 937 Query: 384 LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437 L ++ L+RR + LP K+E V+ C ++ LQ LY+ QAK +E+ Sbjct: 938 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM--QAKGILLTDGSEKD 995 Query: 438 LEGKMSVSSL-SSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEP---- 492 +GK +L ++I L+K+CNHP + E+ F L GYS+ + Sbjct: 996 KKGKGGAKTLMNTIMQLRKICNHPYMFQ----HIEESFAEHL-----GYSNGVINGAELY 1046 Query: 493 QLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKR 552 + SGK +LD IL R+ ++ +V+L T + + E R +LY+RLDGT + R Sbjct: 1047 RASGKFELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDR 1105 Query: 553 AKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQ 612 A ++++FN P S F+F+LS++AGG GLNL A+ +V+FD DWNP D QA R R GQ Sbjct: 1106 AALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQ 1165 Query: 613 KKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVV 646 + + RL + ++EEKI +K + V+ Sbjct: 1166 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1199 >gi|192807320 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform F [Homo sapiens] Length = 1613 Score = 209 bits (533), Expect = 6e-54 Identities = 159/516 (30%), Positives = 260/516 (50%), Gaps = 52/516 (10%) Query: 148 ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207 +++ VL+ +Q +G+++L + + + G I+ADEMGLGKT+Q I L+ L+ Sbjct: 749 MVNGVLKQYQIKGLEWLVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRIN 803 Query: 208 KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265 P + ++ P S + NW E KW ++ + + Q G N Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFN----- 854 Query: 266 VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324 +L+ +YE +L K +I DEGHR+KN + Q L++ + RR+L++ Sbjct: 855 ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT 910 Query: 325 GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383 GTP+QN L E ++L++F+ I + F++ F P + G +E + L +R Sbjct: 911 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL---IIRR 967 Query: 384 LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437 L ++ L+RR + LP K+E V+ C ++ LQ LY+ QAK +E+ Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM--QAKGVLLTDGSEKD 1025 Query: 438 LEGKMSVSSL-SSITSLKKLCNHPALIY--DKCVEEEDGFVGA----LDLFPPGYSSKAL 490 +GK +L ++I L+K+CNHP + ++ E GF G LDL+ Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY--------- 1076 Query: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550 + SGK +LD IL R+ ++ KV+L T + + E R + Y+RLDGT + Sbjct: 1077 --RASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133 Query: 551 KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610 R +++ FN P S F+F+LS++AGG GLNL A+ +++FD DWNP D QA R R Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193 Query: 611 GQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVV 646 GQ+ + RL + ++EEKI +K + V+ Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229 >gi|192807318 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform E [Homo sapiens] Length = 1614 Score = 209 bits (533), Expect = 6e-54 Identities = 159/516 (30%), Positives = 260/516 (50%), Gaps = 52/516 (10%) Query: 148 ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207 +++ VL+ +Q +G+++L + + + G I+ADEMGLGKT+Q I L+ L+ Sbjct: 749 MVNGVLKQYQIKGLEWLVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRIN 803 Query: 208 KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265 P + ++ P S + NW E KW ++ + + Q G N Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFN----- 854 Query: 266 VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324 +L+ +YE +L K +I DEGHR+KN + Q L++ + RR+L++ Sbjct: 855 ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT 910 Query: 325 GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383 GTP+QN L E ++L++F+ I + F++ F P + G +E + L +R Sbjct: 911 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL---IIRR 967 Query: 384 LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437 L ++ L+RR + LP K+E V+ C ++ LQ LY+ QAK +E+ Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM--QAKGVLLTDGSEKD 1025 Query: 438 LEGKMSVSSL-SSITSLKKLCNHPALIY--DKCVEEEDGFVGA----LDLFPPGYSSKAL 490 +GK +L ++I L+K+CNHP + ++ E GF G LDL+ Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY--------- 1076 Query: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550 + SGK +LD IL R+ ++ KV+L T + + E R + Y+RLDGT + Sbjct: 1077 --RASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133 Query: 551 KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610 R +++ FN P S F+F+LS++AGG GLNL A+ +++FD DWNP D QA R R Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193 Query: 611 GQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVV 646 GQ+ + RL + ++EEKI +K + V+ Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229 >gi|192807316 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform D [Homo sapiens] Length = 1616 Score = 209 bits (533), Expect = 6e-54 Identities = 159/516 (30%), Positives = 260/516 (50%), Gaps = 52/516 (10%) Query: 148 ILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPEC 207 +++ VL+ +Q +G+++L + + + G I+ADEMGLGKT+Q I L+ L+ Sbjct: 749 MVNGVLKQYQIKGLEWLVS-LYNNNLNG----ILADEMGLGKTIQTIALITYLMEHKRIN 803 Query: 208 KPEIDKAVVVSPSSLVKNWYNEVGKWLGG--RIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265 P + ++ P S + NW E KW ++ + + Q G N Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFN----- 854 Query: 266 VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS-RRVLIS 324 +L+ +YE +L K +I DEGHR+KN + Q L++ + RR+L++ Sbjct: 855 ----VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT 910 Query: 325 GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPI-LKGRDAAASEADRQLGEERLRE 383 GTP+QN L E ++L++F+ I + F++ F P + G +E + L +R Sbjct: 911 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL---IIRR 967 Query: 384 LTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP------AEEL 437 L ++ L+RR + LP K+E V+ C ++ LQ LY+ QAK +E+ Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM--QAKGVLLTDGSEKD 1025 Query: 438 LEGKMSVSSL-SSITSLKKLCNHPALIY--DKCVEEEDGFVGA----LDLFPPGYSSKAL 490 +GK +L ++I L+K+CNHP + ++ E GF G LDL+ Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY--------- 1076 Query: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550 + SGK +LD IL R+ ++ KV+L T + + E R + Y+RLDGT + Sbjct: 1077 --RASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133 Query: 551 KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610 R +++ FN P S F+F+LS++AGG GLNL A+ +++FD DWNP D QA R R Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193 Query: 611 GQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVV 646 GQ+ + RL + ++EEKI +K + V+ Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,032,537 Number of Sequences: 37866 Number of extensions: 1379883 Number of successful extensions: 3365 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 3062 Number of HSP's gapped (non-prelim): 109 length of query: 747 length of database: 18,247,518 effective HSP length: 110 effective length of query: 637 effective length of database: 14,082,258 effective search space: 8970398346 effective search space used: 8970398346 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.