Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 21450828
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21450828 Rab interacting lysosomal protein-like 2 [Homo
sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21450828 Rab interacting lysosomal protein-like 2 [Homo sapiens] 415 e-116
gi|195947382 Rab interacting lysosomal protein-like 1 [Homo sapi... 77 8e-15
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 39 0.003
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 39 0.003
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 39 0.003
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 39 0.003
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens] 39 0.003
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens] 39 0.003
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 39 0.003
gi|41872583 Rho-associated, coiled-coil containing protein kinas... 39 0.004
gi|4506803 stem cell growth factor precursor [Homo sapiens] 39 0.004
gi|93204881 Rab interacting lysosomal protein [Homo sapiens] 39 0.004
gi|194578923 sperm associated antigen 9 isoform 1 [Homo sapiens] 38 0.007
gi|27436920 sperm associated antigen 9 isoform 3 [Homo sapiens] 38 0.007
gi|18093112 ABT1-associated protein [Homo sapiens] 38 0.007
gi|58530840 desmoplakin isoform I [Homo sapiens] 37 0.009
gi|169208458 PREDICTED: similar to golgi autoantigen, golgin sub... 37 0.012
gi|154937324 hypothetical protein LOC440295 [Homo sapiens] 37 0.012
gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap... 36 0.021
gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo sapi... 36 0.027
gi|94557295 mitogen-activated protein kinase 8 interacting prote... 36 0.027
gi|6912398 general transcription factor IIIC, polypeptide 3, 102... 35 0.036
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo... 34 0.079
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 34 0.079
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 34 0.10
gi|8922301 WD repeat domain 70 [Homo sapiens] 34 0.10
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 33 0.14
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 33 0.14
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 33 0.14
gi|6005920 thyrotropin-releasing hormone [Homo sapiens] 33 0.18
>gi|21450828 Rab interacting lysosomal protein-like 2 [Homo sapiens]
Length = 211
Score = 415 bits (1067), Expect = e-116
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MEEPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPR 60
MEEPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPR
Sbjct: 1 MEEPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPR 60
Query: 61 VTQLQFKVVRVLEMLEALVNEGSLALEELKMERDHLRKEVEGLRRQSPPASGEVNLGPNK 120
VTQLQFKVVRVLEMLEALVNEGSLALEELKMERDHLRKEVEGLRRQSPPASGEVNLGPNK
Sbjct: 61 VTQLQFKVVRVLEMLEALVNEGSLALEELKMERDHLRKEVEGLRRQSPPASGEVNLGPNK 120
Query: 121 MVVDLTDPNRPRFTLQELRDVLQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKD 180
MVVDLTDPNRPRFTLQELRDVLQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKD
Sbjct: 121 MVVDLTDPNRPRFTLQELRDVLQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKD 180
Query: 181 AVVTSAKNAGRNKEEKTIIKKLFFFRSGKQT 211
AVVTSAKNAGRNKEEKTIIKKLFFFRSGKQT
Sbjct: 181 AVVTSAKNAGRNKEEKTIIKKLFFFRSGKQT 211
>gi|195947382 Rab interacting lysosomal protein-like 1 [Homo
sapiens]
Length = 403
Score = 77.4 bits (189), Expect = 8e-15
Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 19/161 (11%)
Query: 17 DEERDEV-GPEGALGKSPFQLTAEDVYDISYLLGRELMALGSD--PRVTQLQFKVVRVLE 73
D++RDE+ + LG L EDV + R LM + D RVT ++ + ++E
Sbjct: 171 DKQRDEIRAKDRELG-----LKNEDVEALQQQQTR-LMKINHDLRHRVTVVEAQGKALIE 224
Query: 74 M---LEALVNEGSLALEELKMERDHLRKEVEGLRRQS-------PPASGEVNLGPNKMVV 123
LEA + + L+ E LR+ ++G Q+ P E K+ +
Sbjct: 225 QKVELEADLQTKEQEMGSLRAELGKLRERLQGEHSQNGEEEPETEPVGEESISDAEKVAM 284
Query: 124 DLTDPNRPRFTLQELRDVLQERNKLKSQLLVVQEELQCYKS 164
DL DPNRPRFTLQELRDVL ERN+LKS++ ++QEEL YKS
Sbjct: 285 DLKDPNRPRFTLQELRDVLHERNELKSKVFLLQEELAYYKS 325
Score = 56.2 bits (134), Expect = 2e-08
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 16 EDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSD---PRVTQLQFKVVRVL 72
E+E + E AL K+ +LT DVYDI+ L+G E + + +L KVVRVL
Sbjct: 2 EEERGSALAAESALEKNVAELTVMDVYDIASLVGHEFERVIDQHGCEAIARLMPKVVRVL 61
Query: 73 EMLEALVNEGSLA--LEELKMERDHLRKE 99
E+LE LV+ +A L+EL++E D LR E
Sbjct: 62 EILEVLVSRHHVAPELDELRLELDRLRLE 90
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 15/195 (7%)
Query: 3 EPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPRVT 62
+PPV E EE + + + E A +Q E++ + L ++ SD
Sbjct: 573 KPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASD-EAE 631
Query: 63 QLQFKVVRVLEMLEALVNEGSLALEELKMERDHLRKEVEGLRRQSPPASGE-VNLGPNKM 121
++ + R+++ L V+E S +E + E + RK R+ + E ++ ++
Sbjct: 632 DMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRK-----RKSLEDVTAEYIHKAEHEK 686
Query: 122 VVDLTDPNRPRFTLQELRDVLQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKDA 181
++ LT+ +R + D L E +KSQ V EL K + +E E
Sbjct: 687 LMQLTNVSRAK-----AEDALSE---MKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQ 738
Query: 182 VVTSAKNAGRNKEEK 196
V+T+ + A + EEK
Sbjct: 739 VITTLRTAAKEMEEK 753
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 15/195 (7%)
Query: 3 EPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPRVT 62
+PPV E EE + + + E A +Q E++ + L ++ SD
Sbjct: 562 KPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASD-EAE 620
Query: 63 QLQFKVVRVLEMLEALVNEGSLALEELKMERDHLRKEVEGLRRQSPPASGE-VNLGPNKM 121
++ + R+++ L V+E S +E + E + RK R+ + E ++ ++
Sbjct: 621 DMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRK-----RKSLEDVTAEYIHKAEHEK 675
Query: 122 VVDLTDPNRPRFTLQELRDVLQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKDA 181
++ LT+ +R + D L E +KSQ V EL K + +E E
Sbjct: 676 LMQLTNVSRAK-----AEDALSE---MKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQ 727
Query: 182 VVTSAKNAGRNKEEK 196
V+T+ + A + EEK
Sbjct: 728 VITTLRTAAKEMEEK 742
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 15/195 (7%)
Query: 3 EPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPRVT 62
+PPV E EE + + + E A +Q E++ + L ++ SD
Sbjct: 541 KPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASD-EAE 599
Query: 63 QLQFKVVRVLEMLEALVNEGSLALEELKMERDHLRKEVEGLRRQSPPASGE-VNLGPNKM 121
++ + R+++ L V+E S +E + E + RK R+ + E ++ ++
Sbjct: 600 DMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRK-----RKSLEDVTAEYIHKAEHEK 654
Query: 122 VVDLTDPNRPRFTLQELRDVLQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKDA 181
++ LT+ +R + D L E +KSQ V EL K + +E E
Sbjct: 655 LMQLTNVSRAK-----AEDALSE---MKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQ 706
Query: 182 VVTSAKNAGRNKEEK 196
V+T+ + A + EEK
Sbjct: 707 VITTLRTAAKEMEEK 721
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 15/195 (7%)
Query: 3 EPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPRVT 62
+PPV E EE + + + E A +Q E++ + L ++ SD
Sbjct: 570 KPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASD-EAE 628
Query: 63 QLQFKVVRVLEMLEALVNEGSLALEELKMERDHLRKEVEGLRRQSPPASGE-VNLGPNKM 121
++ + R+++ L V+E S +E + E + RK R+ + E ++ ++
Sbjct: 629 DMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRK-----RKSLEDVTAEYIHKAEHEK 683
Query: 122 VVDLTDPNRPRFTLQELRDVLQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKDA 181
++ LT+ +R + D L E +KSQ V EL K + +E E
Sbjct: 684 LMQLTNVSRAK-----AEDALSE---MKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQ 735
Query: 182 VVTSAKNAGRNKEEK 196
V+T+ + A + EEK
Sbjct: 736 VITTLRTAAKEMEEK 750
>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 15/195 (7%)
Query: 3 EPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPRVT 62
+PPV E EE + + + E A +Q E++ + L ++ SD
Sbjct: 570 KPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASD-EAE 628
Query: 63 QLQFKVVRVLEMLEALVNEGSLALEELKMERDHLRKEVEGLRRQSPPASGE-VNLGPNKM 121
++ + R+++ L V+E S +E + E + RK R+ + E ++ ++
Sbjct: 629 DMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRK-----RKSLEDVTAEYIHKAEHEK 683
Query: 122 VVDLTDPNRPRFTLQELRDVLQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKDA 181
++ LT+ +R + D L E +KSQ V EL K + +E E
Sbjct: 684 LMQLTNVSRAK-----AEDALSE---MKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQ 735
Query: 182 VVTSAKNAGRNKEEK 196
V+T+ + A + EEK
Sbjct: 736 VITTLRTAAKEMEEK 750
>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 15/195 (7%)
Query: 3 EPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPRVT 62
+PPV E EE + + + E A +Q E++ + L ++ SD
Sbjct: 570 KPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASD-EAE 628
Query: 63 QLQFKVVRVLEMLEALVNEGSLALEELKMERDHLRKEVEGLRRQSPPASGE-VNLGPNKM 121
++ + R+++ L V+E S +E + E + RK R+ + E ++ ++
Sbjct: 629 DMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRK-----RKSLEDVTAEYIHKAEHEK 683
Query: 122 VVDLTDPNRPRFTLQELRDVLQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKDA 181
++ LT+ +R + D L E +KSQ V EL K + +E E
Sbjct: 684 LMQLTNVSRAK-----AEDALSE---MKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQ 735
Query: 182 VVTSAKNAGRNKEEK 196
V+T+ + A + EEK
Sbjct: 736 VITTLRTAAKEMEEK 750
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 38.9 bits (89), Expect = 0.003
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 11/150 (7%)
Query: 11 EEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPRVTQLQFKVVR 70
+E+G + ERD + L ++ F + + + +S+L L D ++ L +
Sbjct: 2772 KEQGLLNRERDAL-----LSETAFSMNSTEENSLSHLEKLNQQLLSKDEQLLHLSSQ--- 2823
Query: 71 VLEMLEALVNEGSLALEELKMERDHLRKEVEGLRRQSPPASGEVNLGPNKMVVDLTDPNR 130
LE V S A+ L+ ERDHL E+E R+ S P+ ++ +
Sbjct: 2824 -LEDSYNQVQSFSKAMASLQNERDHLWNELEKFRK-SEEGKQRSAAQPSTSPAEVQSLKK 2881
Query: 131 PRFTLQELRD-VLQERNKLKSQLLVVQEEL 159
+LQ RD +L+E L+ Q L + +E+
Sbjct: 2882 AMSSLQNDRDRLLKELKNLQQQYLQINQEI 2911
Score = 27.3 bits (59), Expect = 9.7
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 63 QLQFKVVRVLEMLEALVNEGSLALEELKMERDHLRKEVEGLRRQSPPASGEVNLGPNKMV 122
++ K +++ +L +A+ EL+ + D KE+E L Q V NK
Sbjct: 2376 EINMKEQKIISLLSGKEEAIQVAIAELRQQHDKEIKELENLLSQE-EEENIVLEEENKKA 2434
Query: 123 VDLTDPNRPRFTLQELRDVLQERNKLKSQL 152
VD T+ ++ L+ + +E + K+QL
Sbjct: 2435 VDKTNQ-----LMETLKTIKKENIQQKAQL 2459
>gi|41872583 Rho-associated, coiled-coil containing protein kinase 2
[Homo sapiens]
Length = 1388
Score = 38.5 bits (88), Expect = 0.004
Identities = 36/165 (21%), Positives = 80/165 (48%), Gaps = 4/165 (2%)
Query: 39 EDVYDISYLLGRELMALGSDPRVTQLQFKVVRVLEMLEALVNEGSLALEELKMERDHLRK 98
EDV +++ + +E ++Q + V L+M E + + + L E+KM +L K
Sbjct: 787 EDVRNLTLKIEQETQKRCLTQNDLKMQTQQVNTLKMSEKQLKQENNHLMEMKM---NLEK 843
Query: 99 EVEGLRRQSPPASGEVNLGPNKMVVDLTDPNRPRFTLQELRDVLQERNKLKSQLLVVQEE 158
+ LR++ A G++ +++ + + ++EL++ +E+ KL +L ++E
Sbjct: 844 QNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVRELKEECEEKTKLGKELQQKKQE 903
Query: 159 LQCYKSGLIPPREGPGGRREKDAVVTS-AKNAGRNKEEKTIIKKL 202
LQ + L E + + + + S A+ + E++ I+K+L
Sbjct: 904 LQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEKEKIMKEL 948
>gi|4506803 stem cell growth factor precursor [Homo sapiens]
Length = 323
Score = 38.5 bits (88), Expect = 0.004
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 25/114 (21%)
Query: 8 EEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPRVTQLQFK 67
E EE++GEE+EE E P + G SP T ED+ ++Y+LGR G D + QL +
Sbjct: 77 EMEEDQGEEEEE--EATPTPSSGPSP-SPTPEDI--VTYILGR---LAGLDAGLHQLHVR 128
Query: 68 V----VRVLEMLEAL---------VNEGSLALEEL--KMERDHLRKE--VEGLR 104
+ RV+E+ + L + AL+E + ER+H R E ++GLR
Sbjct: 129 LHALDTRVVELTQGLRQLRNAAGDTRDAVQALQEAQGRAEREHGRLEGCLKGLR 182
>gi|93204881 Rab interacting lysosomal protein [Homo sapiens]
Length = 401
Score = 38.5 bits (88), Expect = 0.004
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 132 RFTLQELRDVLQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKDAVVTSAKNAGR 191
RF+ +E +LQERN+LK+++ +++EEL ++ L+ PG ++ A
Sbjct: 242 RFSREEFEQILQERNELKAKVFLLKEELAYFQRELLTDHRVPG-------LLLEAMKVAV 294
Query: 192 NKEEKTIIKKL 202
K+ K I K+
Sbjct: 295 RKQRKKIKAKM 305
>gi|194578923 sperm associated antigen 9 isoform 1 [Homo sapiens]
Length = 1321
Score = 37.7 bits (86), Expect = 0.007
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 49 GRELMALGSDPRVTQLQFKVVRVLEMLEAL---VNEGSLALEELKMERDHLRKEVEG--- 102
G +L+ +G + V L + ++LE AL N+ ++EL E+D L+ E+E
Sbjct: 400 GADLLGMGRE--VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ 457
Query: 103 ---------------LRRQSPPASGEVNLGPNKMVVDLTDPNRPRFTLQELRDVLQERNK 147
LR+ A + D+ R RFT E+ VL ERN+
Sbjct: 458 AKLKLEEKNRELEEELRKARAEAEDARQKAKDDDDSDIPTAQRKRFTRVEMARVLMERNQ 517
Query: 148 LKSQLLVVQEELQCYKSGLIPPREGPGGRREK 179
K +L+ +QE ++ + + RE P + +K
Sbjct: 518 YKERLMELQEAVR-WTEMIRASRENPAMQEKK 548
>gi|27436920 sperm associated antigen 9 isoform 3 [Homo sapiens]
Length = 1307
Score = 37.7 bits (86), Expect = 0.007
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 49 GRELMALGSDPRVTQLQFKVVRVLEMLEAL---VNEGSLALEELKMERDHLRKEVEG--- 102
G +L+ +G + V L + ++LE AL N+ ++EL E+D L+ E+E
Sbjct: 386 GADLLGMGRE--VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ 443
Query: 103 ---------------LRRQSPPASGEVNLGPNKMVVDLTDPNRPRFTLQELRDVLQERNK 147
LR+ A + D+ R RFT E+ VL ERN+
Sbjct: 444 AKLKLEEKNRELEEELRKARAEAEDARQKAKDDDDSDIPTAQRKRFTRVEMARVLMERNQ 503
Query: 148 LKSQLLVVQEELQCYKSGLIPPREGPGGRREK 179
K +L+ +QE ++ + + RE P + +K
Sbjct: 504 YKERLMELQEAVR-WTEMIRASRENPAMQEKK 534
>gi|18093112 ABT1-associated protein [Homo sapiens]
Length = 851
Score = 37.7 bits (86), Expect = 0.007
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 2 EEPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRE 51
EE EE+E+E ED+++ + GP+ A GK + ++ED D + L E
Sbjct: 277 EEDEDEEEDEDEDSEDDDKSDSGPDLARGKGNIETSSEDEDDTADLFPEE 326
>gi|58530840 desmoplakin isoform I [Homo sapiens]
Length = 2871
Score = 37.4 bits (85), Expect = 0.009
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 24/115 (20%)
Query: 62 TQLQFKVVRVLEMLEALVNEGSLALEELKMERDHLRKEVEGLRRQSPPASGEVNLGPNK- 120
+QLQ R LE L+ L+N+ L+ ER++LR+E+E ++Q+ AS + N+
Sbjct: 1754 SQLQISNNRTLE-LQGLIND-------LQRERENLRQEIEKFQKQALEASNRIQESKNQC 1805
Query: 121 ---------MVVDLTDPNRPRFTLQELRDVLQERNKLKSQLLV---VQEELQCYK 163
++V + + + LQ L D E N+ KS L V++ L+C K
Sbjct: 1806 TQVVQERESLLVKIKVLEQDKARLQRLED---ELNRAKSTLEAETRVKQRLECEK 1857
>gi|169208458 PREDICTED: similar to golgi autoantigen, golgin
subfamily a-like [Homo sapiens]
Length = 432
Score = 37.0 bits (84), Expect = 0.012
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 82 GSLALEELKMERDHLRKEVEGLRRQSPPASGEVNLGPNKMVVDLTDPNRPRFTLQELRDV 141
G +E+L+ E +HLRKE+E + RQ EV +++ R R + LR+
Sbjct: 155 GPSKVEQLQDETNHLRKELESVGRQ---LQAEVENNQMLSLLNRRQEERLREQEERLREQ 211
Query: 142 LQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKDAVVTSAKNAGRNKEEKTIIKK 201
+ + + +L +E L+ + L + PG R + V K R +E++ ++++
Sbjct: 212 EERLCEQEERLCEQEERLREQEERLCEQEKLPGQERLLEEVEKLLKQERRQEEQERLLER 271
>gi|154937324 hypothetical protein LOC440295 [Homo sapiens]
Length = 432
Score = 37.0 bits (84), Expect = 0.012
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 82 GSLALEELKMERDHLRKEVEGLRRQSPPASGEVNLGPNKMVVDLTDPNRPRFTLQELRDV 141
G +E+L+ E +HLRKE+E + RQ EV +++ R R + LR+
Sbjct: 155 GPSKVEQLQDETNHLRKELESVGRQ---LQAEVENNQMLSLLNRRQEERLREQEERLREQ 211
Query: 142 LQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKDAVVTSAKNAGRNKEEKTIIKK 201
+ + + +L +E L+ + L + PG R + V K R +E++ ++++
Sbjct: 212 EERLCEQEERLCEQEERLREQEERLCEQEKLPGQERLLEEVEKLLKQERRQEEQERLLER 271
>gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 432
Score = 36.2 bits (82), Expect = 0.021
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 82 GSLALEELKMERDHLRKEVEGLRRQSPPASGEVNLGPNKMVVDLTDPNRPRFTLQELRDV 141
G +E+L+ E +HLRKE+E + RQ EV +++ R R + LR+
Sbjct: 155 GPSKVEQLQDETNHLRKELESVGRQ---LQAEVENNQMLSLLNRRQEERLREQEERLRE- 210
Query: 142 LQERNKLKSQLLVVQEELQCYKSGLIPPREG-PGGRREKDAVVTSAKNAGRNKEEKTIIK 200
+ER + + L QEE C + + +E PG R + V + R +E++ +++
Sbjct: 211 QEERLHEQEERLCEQEERLCEQEERLCEQEKLPGQERLLEEVEKLLEQERRQEEQERLLE 270
Query: 201 K 201
+
Sbjct: 271 R 271
>gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo
sapiens]
Length = 631
Score = 35.8 bits (81), Expect = 0.027
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 2 EEPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAED 40
EE EEEEEE EE+EE+ GP+G+ G ED
Sbjct: 130 EEEEEEEEEEEEEEEEEEQPRAGPQGSGGNHEQYSLEED 168
>gi|94557295 mitogen-activated protein kinase 8 interacting protein
3 isoform 2 [Homo sapiens]
Length = 1330
Score = 35.8 bits (81), Expect = 0.027
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 6/174 (3%)
Query: 14 GEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPRVTQLQFKVVRVLE 73
G+ DE D +G +GK L E+ + ++ +V QL + +
Sbjct: 395 GDVDEGADLLGEFSGMGKEVGNLLLENSQLLETKNALNVVKNDLIAKVDQLSGEQEVLRG 454
Query: 74 MLEALVNEGSLALE----ELKMERDHLRKEVEGLRRQSPPASGEVNLGPNKMVVDLTDPN 129
LEA + + LE EL+ E ++ E RR+ + +V+ +
Sbjct: 455 ELEA-AKQAKVKLENRIKELEEELKRVKSEAIIARREPKEEAEDVSSYLCTESDKIPMAQ 513
Query: 130 RPRFTLQELRDVLQERNKLKSQLLVVQEELQCYKSGLIPPREGPGGRREKDAVV 183
R RFT E+ VL ERN+ K +L+ +QE ++ + + RE P + +K + +
Sbjct: 514 RRRFTRVEMARVLMERNQYKERLMELQEAVR-WTEMIRASREHPSVQEKKKSTI 566
>gi|6912398 general transcription factor IIIC, polypeptide 3, 102kDa
[Homo sapiens]
Length = 886
Score = 35.4 bits (80), Expect = 0.036
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 8 EEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGRELMALGSDPR 60
+EEEEE EE+EE +E PE Q TA DV+ + +L RE + + R
Sbjct: 96 DEEEEEEEEEEEEEEETPE--------QPTAGDVFVLEMVLNRETKKMMKEKR 140
>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
sapiens]
Length = 1483
Score = 34.3 bits (77), Expect = 0.079
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 44 ISYLLGRELMALGSDPRVT---QLQFKVVRVLEMLEALVNEGSLALEE----LKMERDHL 96
+S ++ + L S+ R +L+ V + E+LE S++ E+ LK +R+ L
Sbjct: 495 LSCVISKTARLLSSEDRARLPEELRSLVQKRYELLEHKKRWASMSEEQRKEYLKKKREEL 554
Query: 97 RKEVEGLRRQSPPASGEVNLGPNKMVVD--LTDPNRPRFTLQELRDVLQERNKLKSQLLV 154
+K+++ ++ L K D LT N P F L + + L N L + +
Sbjct: 555 KKKLKEKAKERREKEMLERLEKQKRYEDQELTGKNLPAFRLVDTPEGLP--NTLFGDVAM 612
Query: 155 VQEELQCYKSGLIPPREGP 173
V E L CY L+P + P
Sbjct: 613 VVEFLSCYSGLLLPDAQYP 631
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 34.3 bits (77), Expect = 0.079
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 2 EEPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAE 39
EE E EEEE EE+EE +E EG G P +L E
Sbjct: 465 EEEEEEEAEEEEEEEEEEEEEEEDEGCKGLFPSELDEE 502
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 33.9 bits (76), Expect = 0.10
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 67 KVVRVLEMLEALVNEGSLALEELKMERDHLRKEVEGLR----RQSPPASGEVNLGPNKMV 122
+ +R E+L + E +L +K E +HL++E+E LR R +P A + ++
Sbjct: 836 QALRKNEILRQTIEEKDRSLGSMKEENNHLQEELERLREEQSRTAPVADPKTLDSVTELA 895
Query: 123 VDLTDPNRPRFTLQE----LRDVLQERNKLKSQLLVVQEE 158
+++ N + L+E + +++++N+ K QLL +E
Sbjct: 896 SEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQE 935
>gi|8922301 WD repeat domain 70 [Homo sapiens]
Length = 654
Score = 33.9 bits (76), Expect = 0.10
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 4 PPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLG-RELMALGSDPRVT 62
PP+ EEEEE EE+EE +E E + K P D ++I+ G + + ALG DP
Sbjct: 144 PPLNEEEEEAEEEEEEEEE--EENPVHKIP------DSHEITLKHGTKTVSALGLDPSGA 195
Query: 63 QL 64
+L
Sbjct: 196 RL 197
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 33.5 bits (75), Expect = 0.14
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 3 EPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGREL 52
E EEEEE+ +EDE+ DE G E LG+ E+ +SYL+ E+
Sbjct: 185 EEEEEEEEEEDEDEDEDEDEAGSE--LGE------GEEEVGLSYLMKEEI 226
Score = 29.3 bits (64), Expect = 2.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 2 EEPPVREEEEEEGEEDEERDEVGPEG 27
E P EE++E+G+ED+E +E G
Sbjct: 154 EAPDSEEEDDEDGDEDDEEEEENEAG 179
>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 2 [Homo sapiens]
Length = 227
Score = 33.5 bits (75), Expect = 0.14
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 3 EPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGREL 52
E EEEEE+ +EDE+ DE G E LG+ E+ +SYL+ E+
Sbjct: 144 EEEEEEEEEEDEDEDEDEDEAGSE--LGE------GEEEVGLSYLMKEEI 185
Score = 29.3 bits (64), Expect = 2.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 2 EEPPVREEEEEEGEEDEERDEVGPEG 27
E P EE++E+G+ED+E +E G
Sbjct: 113 EAPDSEEEDDEDGDEDDEEEEENEAG 138
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 33.5 bits (75), Expect = 0.14
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 3 EPPVREEEEEEGEEDEERDEVGPEGALGKSPFQLTAEDVYDISYLLGREL 52
E EEEEE+ +EDE+ DE G E LG+ E+ +SYL+ E+
Sbjct: 137 EEEEEEEEEEDEDEDEDEDEAGSE--LGE------GEEEVGLSYLMKEEI 178
Score = 29.3 bits (64), Expect = 2.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 2 EEPPVREEEEEEGEEDEERDEVGPEG 27
E P EE++E+G+ED+E +E G
Sbjct: 106 EAPDSEEEDDEDGDEDDEEEEENEAG 131
>gi|6005920 thyrotropin-releasing hormone [Homo sapiens]
Length = 242
Score = 33.1 bits (74), Expect = 0.18
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 2 EEPPVREEEEEEGEEDEERDEVGPEG 27
+ P REEEEEEG E+EE +E G G
Sbjct: 84 QHPGKREEEEEEGVEEEEEEEGGAVG 109
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.134 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,094,901
Number of Sequences: 37866
Number of extensions: 432468
Number of successful extensions: 7875
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 4515
Number of HSP's gapped (non-prelim): 2322
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.