Guide to the Human Genome
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Name: RILPL1 Sequence: fasta or formatted (403aa) NCBI GI: 195947382
Description:

Rab interacting lysosomal protein-like 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         24           2
 C cysteine            0.2          1           1
 D aspartate           5.5         22           2
 E glutamate          16.1         65           3
 F phenylalanine       2.2          9           2
 G glycine             4.0         16           1
 H histidine           3.7         15           2
 I isoleucine          3.5         14           1
 K lysine              6.7         27           2
 L leucine            11.4         46           2
 M methionine          2.7         11           1
 N asparagine          3.2         13           1
 P proline             3.2         13           3
 Q glutamine           7.4         30           4
 R arginine            8.4         34           1
 S serine              4.7         19           1
 T threonine           2.7         11           1
 V valine              6.7         27           2
 W tryptophan          0.5          2           1
 Y tyrosine            1.0          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rab interacting lysosomal protein-like 1 
RILP                  0.137   Rab interacting lysosomal protein 
RILPL2                0.068   Rab interacting lysosomal protein-like 2 
CENPE                 0.058   centromere protein E 
PPL                   0.054   periplakin 
MYH9                  0.052   myosin, heavy polypeptide 9, non-muscle 
LOC100133758          0.048   PREDICTED: hypothetical protein, partial 
BAT2D1                0.047   HBxAg transactivated protein 2 
LOC727832             0.046   golgi autoantigen, golgin subfamily a-like 
MYH14                 0.046   myosin, heavy chain 14 isoform 1 
MYH14                 0.046   myosin, heavy chain 14 isoform 2 
MYH14                 0.046   myosin, heavy chain 14 isoform 3 
MYH10                 0.046   myosin, heavy polypeptide 10, non-muscle 
KIAA1524              0.046   p90 autoantigen 
SMC1A                 0.046   structural maintenance of chromosomes 1A 
PNN                   0.046   pinin, desmosome associated protein 
WDR87                 0.044   NYD-SP11 protein 
LOC283685             0.044   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYH11                 0.044   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.044   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.044   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.044   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
GOLGB1                0.044   golgi autoantigen, golgin subfamily b, macrogolgin ...
LOC645202             0.044   PREDICTED: hypothetical protein LOC645202 
C14orf145             0.043   hypothetical protein LOC145508 
GOLGA4                0.043   golgi autoantigen, golgin subfamily a, 4 
NIN                   0.043   ninein isoform 4 
NIN                   0.043   ninein isoform 5 
NIN                   0.043   ninein isoform 1 
NIN                   0.043   ninein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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