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Search of human proteins with 21450800
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21450800 nei like 2 isoform a [Homo sapiens]
(332 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209364526 nei like 2 isoform a [Homo sapiens] 693 0.0
gi|21450800 nei like 2 isoform a [Homo sapiens] 693 0.0
gi|209364528 nei like 2 isoform b [Homo sapiens] 570 e-163
gi|209364530 nei like 2 isoform c [Homo sapiens] 360 1e-99
gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens] 59 6e-09
gi|205360991 nei endonuclease VIII-like 1 [Homo sapiens] 45 1e-04
gi|194097341 period 1 [Homo sapiens] 35 0.071
gi|23510368 homeobox D11 [Homo sapiens] 35 0.093
gi|40807477 retinoic acid induced 1 [Homo sapiens] 35 0.12
gi|45827753 transforming, acidic coiled-coil containing protein ... 35 0.12
gi|11119414 transforming, acidic coiled-coil containing protein ... 35 0.12
gi|4505419 nucleolar protein 3 [Homo sapiens] 33 0.27
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 33 0.27
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.46
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.46
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.46
gi|153792074 proline rich 12 [Homo sapiens] 32 0.60
gi|239582741 FERM and PDZ domain containing 1 [Homo sapiens] 32 0.79
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 32 0.79
gi|118600971 transcription elongation factor A (SII)-like 6 [Hom... 32 0.79
gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens] 32 1.0
gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Hom... 32 1.0
gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo... 32 1.0
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 32 1.0
gi|153070260 myristoylated alanine-rich protein kinase C substra... 31 1.3
gi|32698730 nuclear fragile X mental retardation protein interac... 31 1.3
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 31 1.3
gi|33457316 pleckstrin homology domain containing, family O memb... 31 1.8
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 30 2.3
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 30 2.3
>gi|209364526 nei like 2 isoform a [Homo sapiens]
Length = 332
Score = 693 bits (1788), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE 60
MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE
Sbjct: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE 60
Query: 61 EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER 120
EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER
Sbjct: 61 EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER 120
Query: 121 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC 180
DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC
Sbjct: 121 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC 180
Query: 181 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR 240
QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR
Sbjct: 181 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR 240
Query: 241 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE 300
AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE
Sbjct: 241 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE 300
Query: 301 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 332
AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
Sbjct: 301 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 332
>gi|21450800 nei like 2 isoform a [Homo sapiens]
Length = 332
Score = 693 bits (1788), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE 60
MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE
Sbjct: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE 60
Query: 61 EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER 120
EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER
Sbjct: 61 EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER 120
Query: 121 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC 180
DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC
Sbjct: 121 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC 180
Query: 181 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR 240
QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR
Sbjct: 181 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR 240
Query: 241 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE 300
AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE
Sbjct: 241 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE 300
Query: 301 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 332
AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
Sbjct: 301 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 332
>gi|209364528 nei like 2 isoform b [Homo sapiens]
Length = 271
Score = 570 bits (1469), Expect = e-163
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 62 MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERD 121
MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERD
Sbjct: 1 MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERD 60
Query: 122 APAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQ 181
APAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQ
Sbjct: 61 APAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQ 120
Query: 182 LSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRA 241
LSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRA
Sbjct: 121 LSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRA 180
Query: 242 GIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKEA 301
GIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKEA
Sbjct: 181 GIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKEA 240
Query: 302 FGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 332
FGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
Sbjct: 241 FGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 271
>gi|209364530 nei like 2 isoform c [Homo sapiens]
Length = 216
Score = 360 bits (923), Expect = 1e-99
Identities = 170/174 (97%), Positives = 171/174 (98%)
Query: 159 RDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY 218
+D RLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY
Sbjct: 43 QDTQVRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY 102
Query: 219 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG 278
TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG
Sbjct: 103 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG 162
Query: 279 RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 332
RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
Sbjct: 163 RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 216
Score = 99.0 bits (245), Expect = 5e-21
Identities = 50/56 (89%), Positives = 51/56 (91%), Gaps = 3/56 (5%)
Query: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRF 56
MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQV +L L F
Sbjct: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQV---RLVLHF 53
>gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens]
Length = 605
Score = 58.9 bits (141), Expect = 6e-09
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 220 LLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG- 278
L+DQ G+GNIIKNEAL+ +G+HP L+ + L+ + +FS + + + G
Sbjct: 181 LMDQNVLPGVGNIIKNEALFDSGLHPAVKVCQLTDEQIHHLMKMIRDFSILFYRCRKAGL 240
Query: 279 -RPQHTQVYQKEQCPAGH-QVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQ 330
+H +VY++ C H ++ FG + R+T++CP CQ + + + C+
Sbjct: 241 ALSKHYKVYKRPNCGQCHCRITVCRFGDNN---RMTYFCPHCQKENPQHVDICK 291
>gi|205360991 nei endonuclease VIII-like 1 [Homo sapiens]
Length = 390
Score = 44.7 bits (104), Expect = 1e-04
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 161 PSPRLVLHFGGGGFLAFYNCQLSWSSS--PVVTPTCDILSEKFHRGQALEALGQAQPVCY 218
P PRL L F ++ W P V E R A +A + P+C
Sbjct: 106 PGPRLALCFVDIRRFGRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDR--PICE 163
Query: 219 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLG-SVLSA 254
LLDQR+F+G+GN ++ E LYR I P SVL A
Sbjct: 164 ALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 35.4 bits (80), Expect = 0.071
Identities = 28/69 (40%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 63 GPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERDA 122
G PGSS P PP E E A +V E S Q L GSS EL+ Q +DS A
Sbjct: 1002 GGPGSSAGPPPPSAEAA-EPEARLAEVTESSNQDALSGSSDLLELLLQ--EDSRSGTGSA 1058
Query: 123 PAGDAGRWL 131
+G G L
Sbjct: 1059 ASGSLGSGL 1067
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 35.0 bits (79), Expect = 0.093
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 63 GPPGSSPTPEPPQKEVQKEGAA---DPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLE 119
GPP + P P PP Q EGAA DP+ G ++ +E P+G + +
Sbjct: 187 GPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSE--PKGAAEGSGGD 244
Query: 120 RDAPAGDAG 128
+ P G+AG
Sbjct: 245 GEGPPGEAG 253
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 34.7 bits (78), Expect = 0.12
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 63 GPPGSSPTPEPPQKEVQKEGAA--DPKQVGEPSGQKTLDGSSRSAELVPQGEDD----SE 116
GPPG + TP PP K K+ AA K+VG+PS + S+ +A +P D S+
Sbjct: 1070 GPPGLTTTPAPPDKLGGKQRAAFKSGKRVGKPSPKAASSPSNPAA--LPVASDSSPMGSK 1127
Query: 117 YLERDAPA 124
E D+P+
Sbjct: 1128 TKETDSPS 1135
>gi|45827753 transforming, acidic coiled-coil containing protein 2
isoform c [Homo sapiens]
Length = 996
Score = 34.7 bits (78), Expect = 0.12
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 27 GSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDEEMGPPGSSPTPEPPQKEV--QKEGAA 84
G S+ LQPA L L+ ++ F+ E P + P P PP EV + E +
Sbjct: 2 GGSQSLQPAPASDLNLEASEAMSSDSEEAFETPESTTPVKAPPAPPPPPPEVIPEPEVST 61
Query: 85 DPKQVGEPSGQKTL---DG----SSRSAELVPQGEDDSEYLERDAPAGDAGRW 130
P G +T+ DG S + P S + D P +G +
Sbjct: 62 QPPPEEPGCGSETVPVPDGPRSDSVEGSPFRPPSHSFSAVFDEDKPIASSGTY 114
>gi|11119414 transforming, acidic coiled-coil containing protein 2
isoform d [Homo sapiens]
Length = 1026
Score = 34.7 bits (78), Expect = 0.12
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 27 GSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDEEMGPPGSSPTPEPPQKEV--QKEGAA 84
G S+ LQPA L L+ ++ F+ E P + P P PP EV + E +
Sbjct: 2 GGSQSLQPAPASDLNLEASEAMSSDSEEAFETPESTTPVKAPPAPPPPPPEVIPEPEVST 61
Query: 85 DPKQVGEPSGQKTL---DG----SSRSAELVPQGEDDSEYLERDAPAGDAGRW 130
P G +T+ DG S + P S + D P +G +
Sbjct: 62 QPPPEEPGCGSETVPVPDGPRSDSVEGSPFRPPSHSFSAVFDEDKPIASSGTY 114
>gi|4505419 nucleolar protein 3 [Homo sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.27
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 57 DLDEEMGPPGS----SPTPEPPQKEVQKEGA--ADPKQVGEPSGQKTLDGSSR-SAELVP 109
D DE GP GS S TPE P+ E++ E + A+P+ EP + + E P
Sbjct: 132 DPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEP 191
Query: 110 QGEDDSEYLERD 121
E + ++ ERD
Sbjct: 192 DPEPEPDFEERD 203
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 33.5 bits (75), Expect = 0.27
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 59 DEEMGPPGSSPTPE-PPQKEVQKEGAADPKQVG-EPS 93
DEE GPPG +P PE + E ++ +P+++G EPS
Sbjct: 448 DEEKGPPGPAPEPEREAETEPERGAGTEPERIGTEPS 484
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 32.7 bits (73), Expect = 0.46
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 59 DEEMGPPGSSPTPEP---PQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVP 109
D+ G PG P+P P P+ + Q E A P + E T G RSAE P
Sbjct: 1331 DKPSGSPGQPPSPAPSPVPEPDAQAEDVAPPPTMAEEEEGTT--GELRSAEPAP 1382
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 32.7 bits (73), Expect = 0.46
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 59 DEEMGPPGSSPTPEP---PQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVP 109
D+ G PG P+P P P+ + Q E A P + E T G RSAE P
Sbjct: 1247 DKPSGSPGQPPSPAPSPVPEPDAQAEDVAPPPTMAEEEEGTT--GELRSAEPAP 1298
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 32.7 bits (73), Expect = 0.46
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 59 DEEMGPPGSSPTPEP---PQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVP 109
D+ G PG P+P P P+ + Q E A P + E T G RSAE P
Sbjct: 1247 DKPSGSPGQPPSPAPSPVPEPDAQAEDVAPPPTMAEEEEGTT--GELRSAEPAP 1298
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 32.3 bits (72), Expect = 0.60
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 64 PPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERDAP 123
PP + P+P PP AA P++ PS + +R L + E + E D
Sbjct: 1505 PPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETAAVCGETDEE 1564
Query: 124 AGDAG 128
AG++G
Sbjct: 1565 AGESG 1569
>gi|239582741 FERM and PDZ domain containing 1 [Homo sapiens]
Length = 1578
Score = 32.0 bits (71), Expect = 0.79
Identities = 42/171 (24%), Positives = 58/171 (33%), Gaps = 22/171 (12%)
Query: 58 LDEEMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEY 117
L +E PPG+SPTPE ++ GA+ E + + SR E
Sbjct: 553 LIKEEQPPGNSPTPEVARRGPSTCGASSTTDSAESEASDSANTESRGYRTSGSSESMDAL 612
Query: 118 LERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAF 177
E D D R +F FGS + + + +R GFL
Sbjct: 613 EEDDL---DTCSSSRSTFFHFGSPGLAESIDSDSQEERSG-----------IETSGFL-- 656
Query: 178 YNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSG 228
C L + P C +F ALE G A + LD R + G
Sbjct: 657 --CLLDLAQR--ANPQCQ--KTEFSESAALETFGWAPELSTVRLDPRLYEG 701
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 32.0 bits (71), Expect = 0.79
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 25 TGGSSKKLQPASL---QSLWLQDTQVHGKKLFLRFDLDEEMGPPGSSPTPEPPQKEVQ-- 79
TG + + +SL S WL+ +V +KL + ++ SS E +E +
Sbjct: 38 TGATQQDANASSLLDIYSFWLKSAKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEV 97
Query: 80 -----KEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSE 116
K+ A K+VG P G+ S S+ +DD E
Sbjct: 98 QGPPAKKAAVPAKRVGLPPGKAAAKASESSSSEESSDDDDEE 139
>gi|118600971 transcription elongation factor A (SII)-like 6 [Homo
sapiens]
Length = 183
Score = 32.0 bits (71), Expect = 0.79
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 45 TQVHGKKLFLRFDLDEEMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRS 104
T+ GK+ + E G G +K+ + EG P+ G+P+ Q +G R+
Sbjct: 42 TECEGKR-----KAEGEPGDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRA 96
Query: 105 AELVPQGE 112
AE P G+
Sbjct: 97 AEKRPAGD 104
>gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens]
Length = 916
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 153 NKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDI--LSEKFHRGQALEAL 210
N+ G W PR L G GF A YNCQ SS + C + L AL+ L
Sbjct: 219 NEDGTW----PRQTLQSNGSGFSASYNCQ-EPPSSHIQPGLCGLGNLGNTCFMNSALQCL 273
Query: 211 GQAQPVCYTLLDQRY 225
P+ L Y
Sbjct: 274 SNTAPLTDYFLKDEY 288
>gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Homo
sapiens]
Length = 742
Score = 31.6 bits (70), Expect = 1.0
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWL--QDTQVHGKKL--FLRF 56
+P+ P + H L + VG + G ++ L + WL + +H + L ++ F
Sbjct: 50 LPQDPALWVLHVLPNHSVG---ISLGQGAEPGPGPGLGTAWLLGDNPPLHLRDLSPYISF 106
Query: 57 DLDEEMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSE 116
+ E G G E ++E +++G A + EP + L +SR + +SE
Sbjct: 107 -VSLEDGEEGEEEEEEDEEEEKREDGGAGSTEKVEPEEDRELAPTSRESPQETNPPGESE 165
Query: 117 YLERDAPAGDAG 128
R+A G G
Sbjct: 166 EAAREAGGGKDG 177
>gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo
sapiens]
Length = 703
Score = 31.6 bits (70), Expect = 1.0
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWL--QDTQVHGKKL--FLRF 56
+P+ P + H L + VG + G ++ L + WL + +H + L ++ F
Sbjct: 50 LPQDPALWVLHVLPNHSVG---ISLGQGAEPGPGPGLGTAWLLGDNPPLHLRDLSPYISF 106
Query: 57 DLDEEMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSE 116
+ E G G E ++E +++G A + EP + L +SR + +SE
Sbjct: 107 -VSLEDGEEGEEEEEEDEEEEKREDGGAGSTEKVEPEEDRELAPTSRESPQETNPPGESE 165
Query: 117 YLERDAPAGDAG 128
R+A G G
Sbjct: 166 EAAREAGGGKDG 177
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 31.6 bits (70), Expect = 1.0
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 59 DEEMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYL 118
+E G PG P+P +E + GA +P Q +G + L+ + + EL E
Sbjct: 81 EEGPGEPGRPAEPQPEPEEPAEVGAEEPAQPEPGAGPEELEAEAGAEELEQAAEGKEVRF 140
Query: 119 ERDAP 123
+ P
Sbjct: 141 QASLP 145
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 61 EMGPPGSSPTPEPPQKEVQKEGAADPK--QVGEPSGQKTLDGSSRSAELVPQGEDDSEYL 118
E G P ++ PE V+KE A+ + + G P+ + S+ S+ P+ ED +
Sbjct: 86 EKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPTAAEGEAASAASSTSSPKAEDGA--- 142
Query: 119 ERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGD 157
+P+ + + + F S ++ FS K + G+
Sbjct: 143 -TPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGE 180
>gi|32698730 nuclear fragile X mental retardation protein
interacting protein 2 [Homo sapiens]
Length = 695
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 3 EGPLVRKFHHL---VSPFVGQQVVKTGGSSKK----LQPASLQSLWLQDTQVHGKKLFLR 55
E P+ K + L SP V ++K+G +S+ L+P+ + L DT G +FL
Sbjct: 557 EHPVFPKAYELEKRTSPQVLGSILKSGTTSESGALSLEPSHIGDLQKADTSSQGALVFLS 616
Query: 56 FDLDEEMGPPGSSPT 70
D + E P +SPT
Sbjct: 617 KDYEIESQNPLASPT 631
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 31.2 bits (69), Expect = 1.3
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 60 EEMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQG--EDDSEY 117
EE PPG PE + E++++ ++ GE + LDG E + + ED S
Sbjct: 90 EERAPPGRPGAPEAAELELEED-----EEEGE---EAELDGDLLEEEELEEAEEEDRSSL 141
Query: 118 LERDAPAGDAGRWLRVSFGLFGSV 141
L PA A + ++ G GSV
Sbjct: 142 LLLSPPAATASQTQQIPGGSLGSV 165
>gi|33457316 pleckstrin homology domain containing, family O member
2 [Homo sapiens]
Length = 490
Score = 30.8 bits (68), Expect = 1.8
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 23/95 (24%)
Query: 45 TQVHGKKL-------FLRFDLD-EEMGPPGSSP-----------TPEP---PQKEVQKEG 82
T+VH K++ LR DLD + GPP +P TP P P K
Sbjct: 155 TRVHLKEVASAASDGLLRLDLDVPDSGPPVFAPSNHVSEAQPRETPRPLMPPTKPFLAPE 214
Query: 83 AADP-KQVGEPSGQKTLDGSSRSAELVPQGEDDSE 116
P +V P G++ S S+E+ P+ ++DSE
Sbjct: 215 TTSPGDRVETPVGERAPTPVSASSEVSPESQEDSE 249
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 62 MGPPGSSPTPEPPQKEVQKEGAADP-KQVGEPSG----QKTLDGSSRSAELVPQGED 113
+G GS P P PP + G+ P VG P QKT SS A +P+ E+
Sbjct: 353 LGEEGSEPPPPPPLPLARDPGSPGPFDYVGAPPAESIPQKTRRTSSEQAVALPRSEE 409
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 62 MGPPGSSPTPEPPQKEVQKEGAADP-KQVGEPSG----QKTLDGSSRSAELVPQGED 113
+G GS P P PP + G+ P VG P QKT SS A +P+ E+
Sbjct: 290 LGEEGSEPPPPPPLPLARDPGSPGPFDYVGAPPAESIPQKTRRTSSEQAVALPRSEE 346
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,566,957
Number of Sequences: 37866
Number of extensions: 822612
Number of successful extensions: 3952
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 3862
Number of HSP's gapped (non-prelim): 167
length of query: 332
length of database: 18,247,518
effective HSP length: 103
effective length of query: 229
effective length of database: 14,347,320
effective search space: 3285536280
effective search space used: 3285536280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.