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Search of human proteins with 21389433
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21389433 heat shock protein, alpha-crystallin-related, B6
[Homo sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21389433 heat shock protein, alpha-crystallin-related, B6 [Ho... 325 1e-89
gi|4503057 crystallin, alpha B [Homo sapiens] 143 7e-35
gi|4503055 crystallin, alpha A [Homo sapiens] 130 5e-31
gi|4504519 heat shock 27kDa protein 2 [Homo sapiens] 104 4e-23
gi|4504517 heat shock protein beta-1 [Homo sapiens] 100 9e-22
gi|7657146 heat shock 22kDa protein 8 [Homo sapiens] 72 3e-13
gi|5453688 heat shock 27kDa protein 3 [Homo sapiens] 67 5e-12
gi|7657202 cardiovascular heat shock protein [Homo sapiens] 54 6e-08
gi|15082238 heat shock protein, alpha-crystallin-related, B9 [Ho... 43 1e-04
gi|21237808 SWI/SNF-related matrix-associated actin-dependent re... 30 0.88
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 30 0.88
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 30 0.88
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 30 1.2
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 30 1.2
gi|239747006 PREDICTED: similar to testis specific protein, Y-li... 29 1.5
gi|239746992 PREDICTED: similar to testis specific protein, Y-li... 29 1.5
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 29 1.5
gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens] 29 1.5
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 29 1.5
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 29 1.5
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 29 1.5
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 29 1.5
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 29 1.5
gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens] 29 2.0
gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens] 29 2.0
gi|169177307 PREDICTED: hypothetical protein [Homo sapiens] 28 3.4
gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens] 28 3.4
gi|51173730 Sma- and Mad-related protein 2 isoform 1 [Homo sapiens] 28 4.4
gi|5174511 Sma- and Mad-related protein 2 isoform 1 [Homo sapiens] 28 4.4
gi|209693426 Sma- and Mad-related protein 2 isoform 2 [Homo sapi... 28 4.4
>gi|21389433 heat shock protein, alpha-crystallin-related, B6 [Homo
sapiens]
Length = 160
Score = 325 bits (832), Expect = 1e-89
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MEIPVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSV 60
MEIPVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSV
Sbjct: 1 MEIPVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSV 60
Query: 61 ALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRR 120
ALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRR
Sbjct: 61 ALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRR 120
Query: 121 YRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAPPPAAAK 160
YRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAPPPAAAK
Sbjct: 121 YRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAPPPAAAK 160
>gi|4503057 crystallin, alpha B [Homo sapiens]
Length = 175
Score = 143 bits (360), Expect = 7e-35
Identities = 73/157 (46%), Positives = 101/157 (64%), Gaps = 11/157 (7%)
Query: 5 VPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSVALP- 63
+ + W+RR P +P RLFDQ FGE LLE++L T+L+P+YLR PS
Sbjct: 3 IAIHHPWIRRPFFPF---HSPSRLFDQFFGEHLLESDLFPTS-TSLSPFYLRPPSFLRAP 58
Query: 64 ------VAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREF 117
++++ + FSV LDVKHFSPEE+ VKV+G+ +EVH +HEER DEHGF++REF
Sbjct: 59 SWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREF 118
Query: 118 HRRYRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAP 154
HR+YR+P VDP +TS+LS +GVL++ P
Sbjct: 119 HRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGP 155
>gi|4503055 crystallin, alpha A [Homo sapiens]
Length = 173
Score = 130 bits (327), Expect = 5e-31
Identities = 63/142 (44%), Positives = 93/142 (65%), Gaps = 7/142 (4%)
Query: 5 VPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRA---PSVA 61
V +Q W +R P P RLFDQ FGEGL E +L +T++PYY ++ +
Sbjct: 3 VTIQHPWFKRTLGPF----YPSRLFDQFFGEGLFEYDLLPFLSSTISPYYRQSLFRTVLD 58
Query: 62 LPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRY 121
+++V +D F + LDVKHFSPE++ VKV + VE+H +H ER D+HG+++REFHRRY
Sbjct: 59 SGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYISREFHRRY 118
Query: 122 RLPPGVDPAAVTSALSPEGVLS 143
RLP VD +A++ +LS +G+L+
Sbjct: 119 RLPSNVDQSALSCSLSADGMLT 140
>gi|4504519 heat shock 27kDa protein 2 [Homo sapiens]
Length = 182
Score = 104 bits (259), Expect = 4e-23
Identities = 59/128 (46%), Positives = 79/128 (61%), Gaps = 8/128 (6%)
Query: 25 PGRLFDQRFGEGLLEAELAALCPTTLAPYYLR---APS---VALPVAQVPTDPGHFSVLL 78
P RL +QRFGEGLL E+ L PT YY+R AP+ +++ G F L
Sbjct: 21 PSRLGEQRFGEGLLPEEI--LTPTLYHGYYVRPRAAPAGEGSRAGASELRLSEGKFQAFL 78
Query: 79 DVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSALSP 138
DV HF+P+E+ V+ V +EV ARH +R D HGFV+REF R Y LP VDP V +ALS
Sbjct: 79 DVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAALSH 138
Query: 139 EGVLSIQA 146
+G+L+++A
Sbjct: 139 DGILNLEA 146
>gi|4504517 heat shock protein beta-1 [Homo sapiens]
Length = 205
Score = 99.8 bits (247), Expect = 9e-22
Identities = 61/159 (38%), Positives = 84/159 (52%), Gaps = 26/159 (16%)
Query: 9 PSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLR--------APSV 60
PSW P RLFDQ FG L E + + P Y+R +P+V
Sbjct: 14 PSW-----DPFRDWYPHSRLFDQAFGLPRLPEEWSQWLGGSSWPGYVRPLPPAAIESPAV 68
Query: 61 ALP-------------VAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERP 107
A P V+++ + V LDV HF+P+E+ VK VE+ +HEER
Sbjct: 69 AAPAYSRALSRQLSSGVSEIRHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHEERQ 128
Query: 108 DEHGFVAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQA 146
DEHG+++R F R+Y LPPGVDP V+S+LSPEG L+++A
Sbjct: 129 DEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEA 167
>gi|7657146 heat shock 22kDa protein 8 [Homo sapiens]
Length = 196
Score = 71.6 bits (174), Expect = 3e-13
Identities = 55/167 (32%), Positives = 72/167 (43%), Gaps = 26/167 (15%)
Query: 9 PSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSVALPVAQVP 68
PS LRR P RL D FG +L A P P A L VP
Sbjct: 13 PSRLRRD--PFRDSPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSSAWPGTLRSGMVP 70
Query: 69 TDPGH--------------------FSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPD 108
P + V ++V F PEE+ VK +VEV +HEE+
Sbjct: 71 RGPTATARFGVPAEGRTPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVEVSGKHEEKQQ 130
Query: 109 EHGFVAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAPP 155
E G V++ F ++ +LP VDP V ++LSPEG+L I+A Q PP
Sbjct: 131 EGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEA----PQVPP 173
>gi|5453688 heat shock 27kDa protein 3 [Homo sapiens]
Length = 150
Score = 67.4 bits (163), Expect = 5e-12
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 65 AQVPTDPG--HFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYR 122
A+ P G HF +LLDV F PE+I ++ + + A+H R DEHGF++R F R+Y+
Sbjct: 60 AETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYK 119
Query: 123 LPPGVDPAAVTSALSPEGVLSIQ 145
LP GV+ +++ L +G+L ++
Sbjct: 120 LPDGVEIKDLSAVLCHDGILVVE 142
>gi|7657202 cardiovascular heat shock protein [Homo sapiens]
Length = 170
Score = 53.9 bits (128), Expect = 6e-08
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 74 FSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVT 133
+ +DV+ FSPE+I V H+EV A E+ G V F + +LP VDP +VT
Sbjct: 82 YEFAVDVRDFSPEDIIVTTSNNHIEVRA---EKLAADGTVMNTFAHKCQLPEDVDPTSVT 138
Query: 134 SALSPEGVLSIQA 146
SAL +G L+I+A
Sbjct: 139 SALREDGSLTIRA 151
>gi|15082238 heat shock protein, alpha-crystallin-related, B9 [Homo
sapiens]
Length = 159
Score = 42.7 bits (99), Expect = 1e-04
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 39 EAELAALCPTTLAPYYLRAPSVAL------PVAQVPTDPGH--FSVLLDVKHFSPEEIAV 90
E+ +A+ CP+ R ++ + P AQ D F + LD F+PEE+ V
Sbjct: 11 ESRVASRCPSVGLAERNRVATMPVRLLRDSPAAQEDNDHARDGFQMKLDAHGFAPEELVV 70
Query: 91 KVVGEHVEVHARHE---ERPDEHGFVAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQ-- 145
+V G+ + V + + P+ + + R LP + P A+T L+P G L ++
Sbjct: 71 QVDGQWLMVTGQQQLDVRDPERVSYRMSQKVHRKMLPSNLSPTAMTCCLTPSGQLWVRGQ 130
Query: 146 ----AAPASAQAPPP 156
A P + P P
Sbjct: 131 CVALALPEAQTGPSP 145
>gi|21237808 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform b [Homo sapiens]
Length = 1130
Score = 30.0 bits (66), Expect = 0.88
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 123 LPPGVDPAAVTSALSPEGVLSIQAAPASAQAPPPAAA 159
LPPG P T A P V + APAS P PA +
Sbjct: 996 LPPGSQPIPPTGAAGPPAVHGLAVAPASV-VPAPAGS 1031
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 30.0 bits (66), Expect = 0.88
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 123 LPPGVDPAAVTSALSPEGVLSIQAAPASAQAPPPAAA 159
LPPG P T A P V + APAS P PA +
Sbjct: 965 LPPGSQPIPPTGAAGPPAVHGLAVAPASV-VPAPAGS 1000
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 30.0 bits (66), Expect = 0.88
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 123 LPPGVDPAAVTSALSPEGVLSIQAAPASAQAPPPAAA 159
LPPG P T A P V + APAS P PA +
Sbjct: 996 LPPGSQPIPPTGAAGPPAVHGLAVAPASV-VPAPAGS 1031
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 29.6 bits (65), Expect = 1.2
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 94 GEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSALSPE--GVLSIQAAPASA 151
G +E +A ++ +HGF +++ Y P A ALS G AA A+
Sbjct: 189 GGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAG 248
Query: 152 QAPPPAAA 159
PPP+++
Sbjct: 249 SKPPPSSS 256
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 29.6 bits (65), Expect = 1.2
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 94 GEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSALSPE--GVLSIQAAPASA 151
G +E +A ++ +HGF +++ Y P A ALS G AA A+
Sbjct: 189 GGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAG 248
Query: 152 QAPPPAAA 159
PPP+++
Sbjct: 249 SKPPPSSS 256
>gi|239747006 PREDICTED: similar to testis specific protein,
Y-linked 3 [Homo sapiens]
Length = 314
Score = 29.3 bits (64), Expect = 1.5
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 97 VEVHARHEERPDEHGFVAR--EFHRRYRLPPGVDPAAVTSALSPEGVLSIQAAPASAQA 153
VEV A E +E G V R E R + PG P SAL + ++ P +AQA
Sbjct: 74 VEVVAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESALEELLAVQVELEPVNAQA 132
>gi|239746992 PREDICTED: similar to testis specific protein,
Y-linked 1 [Homo sapiens]
Length = 314
Score = 29.3 bits (64), Expect = 1.5
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 97 VEVHARHEERPDEHGFVAR--EFHRRYRLPPGVDPAAVTSALSPEGVLSIQAAPASAQA 153
VEV A E +E G V R E R + PG P SAL + ++ P +AQA
Sbjct: 74 VEVVAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESALEELLAVQVELEPVNAQA 132
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 29.3 bits (64), Expect = 1.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 124 PPGVDPAAVTSALSPEGVLSIQAAPASAQAPPPAAA 159
PPG A+T + AAPA A AP PA A
Sbjct: 714 PPGAAKPALTPSFGSSFTFGNSAAPAPATAPTPAPA 749
>gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens]
Length = 440
Score = 29.3 bits (64), Expect = 1.5
Identities = 34/130 (26%), Positives = 47/130 (36%), Gaps = 26/130 (20%)
Query: 52 PYYLRAPSVALPVAQVPTDPGHFSV----LLDVKHFS-------PEEIAVKVVG----EH 96
P+++ P P Q DPG V LLD + S E+ V E
Sbjct: 286 PHFMETPLQPPPPVQRVMDPGFLDVSGISLLDNSNASVWPSLPSSTELTTTAVSTSGPED 345
Query: 97 VEVHARHEERPDEHGFVAREFHRRYRLPPGVD-----------PAAVTSALSPEGVLSIQ 145
+ + ER E + EF + PG P ++TSA SPE LS +
Sbjct: 346 ICSSSSSHERGGEATWSGSEFEVSFLDSPGAQAQADHLPQLTLPDSLTSAASPEDGLSAE 405
Query: 146 AAPASAQAPP 155
A A+ P
Sbjct: 406 LLEAQAEEEP 415
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 29.3 bits (64), Expect = 1.5
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 23/140 (16%)
Query: 9 PSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSVALPVAQVP 68
PS +P A GR++ R + A ++A CP + S ++PV
Sbjct: 425 PSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSV 484
Query: 69 TDPGHFSVL----------LDVKHFS---------PEEIAVKVVGEHVEVHARHEERPDE 109
+DPG S+ DVK S P+E+A ++ G +V E+
Sbjct: 485 SDPGVGSISPASPKISLAPTDVKELSTKEPGRTLEPQELA-RIAG---KVPGLQNEQKRF 540
Query: 110 HGFVAREFHRRYRLPPGVDP 129
R+F +++L P P
Sbjct: 541 QLEELRKFGAQFKLQPSSSP 560
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 29.3 bits (64), Expect = 1.5
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 23/140 (16%)
Query: 9 PSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSVALPVAQVP 68
PS +P A GR++ R + A ++A CP + S ++PV
Sbjct: 425 PSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSV 484
Query: 69 TDPGHFSVL----------LDVKHFS---------PEEIAVKVVGEHVEVHARHEERPDE 109
+DPG S+ DVK S P+E+A ++ G +V E+
Sbjct: 485 SDPGVGSISPASPKISLAPTDVKELSTKEPGRTLEPQELA-RIAG---KVPGLQNEQKRF 540
Query: 110 HGFVAREFHRRYRLPPGVDP 129
R+F +++L P P
Sbjct: 541 QLEELRKFGAQFKLQPSSSP 560
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 29.3 bits (64), Expect = 1.5
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 23/140 (16%)
Query: 9 PSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSVALPVAQVP 68
PS +P A GR++ R + A ++A CP + S ++PV
Sbjct: 425 PSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSV 484
Query: 69 TDPGHFSVL----------LDVKHFS---------PEEIAVKVVGEHVEVHARHEERPDE 109
+DPG S+ DVK S P+E+A ++ G +V E+
Sbjct: 485 SDPGVGSISPASPKISLAPTDVKELSTKEPGRTLEPQELA-RIAG---KVPGLQNEQKRF 540
Query: 110 HGFVAREFHRRYRLPPGVDP 129
R+F +++L P P
Sbjct: 541 QLEELRKFGAQFKLQPSSSP 560
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 29.3 bits (64), Expect = 1.5
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 23/140 (16%)
Query: 9 PSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSVALPVAQVP 68
PS +P A GR++ R + A ++A CP + S ++PV
Sbjct: 425 PSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSV 484
Query: 69 TDPGHFSVL----------LDVKHFS---------PEEIAVKVVGEHVEVHARHEERPDE 109
+DPG S+ DVK S P+E+A ++ G +V E+
Sbjct: 485 SDPGVGSISPASPKISLAPTDVKELSTKEPGRTLEPQELA-RIAG---KVPGLQNEQKRF 540
Query: 110 HGFVAREFHRRYRLPPGVDP 129
R+F +++L P P
Sbjct: 541 QLEELRKFGAQFKLQPSSSP 560
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 29.3 bits (64), Expect = 1.5
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 23/140 (16%)
Query: 9 PSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSVALPVAQVP 68
PS +P A GR++ R + A ++A CP + S ++PV
Sbjct: 425 PSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSV 484
Query: 69 TDPGHFSVL----------LDVKHFS---------PEEIAVKVVGEHVEVHARHEERPDE 109
+DPG S+ DVK S P+E+A ++ G +V E+
Sbjct: 485 SDPGVGSISPASPKISLAPTDVKELSTKEPGRTLEPQELA-RIAG---KVPGLQNEQKRF 540
Query: 110 HGFVAREFHRRYRLPPGVDP 129
R+F +++L P P
Sbjct: 541 QLEELRKFGAQFKLQPSSSP 560
>gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens]
Length = 710
Score = 28.9 bits (63), Expect = 2.0
Identities = 45/160 (28%), Positives = 58/160 (36%), Gaps = 33/160 (20%)
Query: 9 PSWLRRASAPLPGLSAPGRLFDQRF----GEGLLEAELAALCPTTLAPYYLRAPSVALPV 64
P LRRA APL A RL R G G E + P P
Sbjct: 21 PGPLRRAPAPLGASPARRRLLLVRGPEDGGPGARPGEASGPSP---------------PP 65
Query: 65 AQVPTDPGHFSVLLDVKHFSPEEIAV----KVVGEHVEVHARHEERPDEHGFVAREFHRR 120
A+ +D F VLL+V H A G V + +R E+ P G A
Sbjct: 66 AEDDSDGDSFLVLLEVPHGGAAAEAAGSQEAEPGSRVNLASRPEQGPS--GPAAPP---- 119
Query: 121 YRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAPP-PAAA 159
PGV PA + S + ++ + + APP PA A
Sbjct: 120 ---GPGVAPAGAVTISSQDLLVRLDRGVLALSAPPGPATA 156
>gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens]
Length = 858
Score = 28.9 bits (63), Expect = 2.0
Identities = 45/160 (28%), Positives = 58/160 (36%), Gaps = 33/160 (20%)
Query: 9 PSWLRRASAPLPGLSAPGRLFDQRF----GEGLLEAELAALCPTTLAPYYLRAPSVALPV 64
P LRRA APL A RL R G G E + P P
Sbjct: 21 PGPLRRAPAPLGASPARRRLLLVRGPEDGGPGARPGEASGPSP---------------PP 65
Query: 65 AQVPTDPGHFSVLLDVKHFSPEEIAV----KVVGEHVEVHARHEERPDEHGFVAREFHRR 120
A+ +D F VLL+V H A G V + +R E+ P G A
Sbjct: 66 AEDDSDGDSFLVLLEVPHGGAAAEAAGSQEAEPGSRVNLASRPEQGPS--GPAAPP---- 119
Query: 121 YRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAPP-PAAA 159
PGV PA + S + ++ + + APP PA A
Sbjct: 120 ---GPGVAPAGAVTISSQDLLVRLDRGVLALSAPPGPATA 156
>gi|169177307 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 28.1 bits (61), Expect = 3.4
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 4 PVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSVALP 63
PV + WL +S+ + G + G+ G + E A TT AP Y R + L
Sbjct: 67 PVAAEGPWLEVSSSGIGG-AGRGQGLGGSQARGTCDPEAAQAMLTTWAPSYRRQATPKLA 125
Query: 64 VAQVPTDPG 72
A DPG
Sbjct: 126 GAPSLADPG 134
>gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]
Length = 511
Score = 28.1 bits (61), Expect = 3.4
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 20/66 (30%)
Query: 6 PVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSVALPVA 65
PVQP + S P PG+ PG P L P++L AP P
Sbjct: 307 PVQPDCILSGSRP-PGVKTPGP-------------------PVALFPFHLGAPGPPAPPP 346
Query: 66 QVPTDP 71
P+ P
Sbjct: 347 SAPSGP 352
>gi|51173730 Sma- and Mad-related protein 2 isoform 1 [Homo sapiens]
Length = 467
Score = 27.7 bits (60), Expect = 4.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 4 PVPVQPSWLRRASAPLPG-LSAPGRLFDQRFGEGLLEAELAALCPTTLAP 52
P ++P P PG +S G DQ+ + + A L PTTL+P
Sbjct: 207 PAGIEPQSNYIPETPPPGYISEDGETSDQQLNQSMDTGSPAELSPTTLSP 256
>gi|5174511 Sma- and Mad-related protein 2 isoform 1 [Homo sapiens]
Length = 467
Score = 27.7 bits (60), Expect = 4.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 4 PVPVQPSWLRRASAPLPG-LSAPGRLFDQRFGEGLLEAELAALCPTTLAP 52
P ++P P PG +S G DQ+ + + A L PTTL+P
Sbjct: 207 PAGIEPQSNYIPETPPPGYISEDGETSDQQLNQSMDTGSPAELSPTTLSP 256
>gi|209693426 Sma- and Mad-related protein 2 isoform 2 [Homo
sapiens]
Length = 437
Score = 27.7 bits (60), Expect = 4.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 4 PVPVQPSWLRRASAPLPG-LSAPGRLFDQRFGEGLLEAELAALCPTTLAP 52
P ++P P PG +S G DQ+ + + A L PTTL+P
Sbjct: 177 PAGIEPQSNYIPETPPPGYISEDGETSDQQLNQSMDTGSPAELSPTTLSP 226
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,953,679
Number of Sequences: 37866
Number of extensions: 403255
Number of successful extensions: 1912
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1857
Number of HSP's gapped (non-prelim): 93
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.