Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 21361625
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361625 Sec5 protein [Homo sapiens]
(924 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361625 Sec5 protein [Homo sapiens] 1839 0.0
gi|194272180 plexin B1 [Homo sapiens] 43 0.001
gi|40254442 plexin B1 [Homo sapiens] 43 0.001
gi|149363636 plexin B2 [Homo sapiens] 42 0.003
gi|157738645 plexin A4 isoform 1 [Homo sapiens] 39 0.017
gi|59710104 plexin A3 [Homo sapiens] 37 0.065
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 35 0.42
gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens] 35 0.42
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 35 0.42
gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens] 35 0.42
gi|23503243 Ras association (RalGDS/AF-6) domain family (N-termi... 35 0.42
gi|64762445 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase ... 33 1.2
gi|64762406 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase ... 33 1.2
gi|8393009 chromosome 11 open reading frame2 [Homo sapiens] 33 1.6
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 32 2.1
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 32 2.1
gi|4505541 USO1 homolog, vesicle docking protein [Homo sapiens] 32 3.6
gi|7705720 mediator of cell motility 1 isoform 1 [Homo sapiens] 31 4.7
gi|212286159 mediator of cell motility 1 isoform 2 [Homo sapiens] 31 4.7
gi|126116589 fibrocystin L [Homo sapiens] 31 4.7
gi|229331967 RIO kinase 2 isoform 1 [Homo sapiens] 31 6.1
gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens] 31 6.1
gi|120587023 down-regulated in metastasis [Homo sapiens] 30 7.9
gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name... 30 7.9
gi|24430181 outer dense fiber of sperm tails 2 isoform 1 [Homo s... 30 7.9
gi|7661880 centaurin beta1 [Homo sapiens] 30 7.9
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens] 30 7.9
>gi|21361625 Sec5 protein [Homo sapiens]
Length = 924
Score = 1839 bits (4764), Expect = 0.0
Identities = 924/924 (100%), Positives = 924/924 (100%)
Query: 1 MSRSRQPPLVTGISPNEGIPWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKI 60
MSRSRQPPLVTGISPNEGIPWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKI
Sbjct: 1 MSRSRQPPLVTGISPNEGIPWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKI 60
Query: 61 VCRVGQAKNDKGDIIVTTKSGGRGTSTVSFKLLKPEKIGILDQSAVWVDEMNYYDMRTDR 120
VCRVGQAKNDKGDIIVTTKSGGRGTSTVSFKLLKPEKIGILDQSAVWVDEMNYYDMRTDR
Sbjct: 61 VCRVGQAKNDKGDIIVTTKSGGRGTSTVSFKLLKPEKIGILDQSAVWVDEMNYYDMRTDR 120
Query: 121 NKGIPPLSLRPANPLGIEIEKSKFSQKDLEMLFHGMSADFTSENFSAAWYLIENHSNTSF 180
NKGIPPLSLRPANPLGIEIEKSKFSQKDLEMLFHGMSADFTSENFSAAWYLIENHSNTSF
Sbjct: 121 NKGIPPLSLRPANPLGIEIEKSKFSQKDLEMLFHGMSADFTSENFSAAWYLIENHSNTSF 180
Query: 181 EQLKMAVTNLKRQANKKSEGSLAYVKGGLSTFFEAQDALSAIHQKLEADGTEKVEGSMTQ 240
EQLKMAVTNLKRQANKKSEGSLAYVKGGLSTFFEAQDALSAIHQKLEADGTEKVEGSMTQ
Sbjct: 181 EQLKMAVTNLKRQANKKSEGSLAYVKGGLSTFFEAQDALSAIHQKLEADGTEKVEGSMTQ 240
Query: 241 KLENVLNRASNTADTLFQEVLGRKDKADSTRNALNVLQRFKFLFNLPLNIERNIQKGDYD 300
KLENVLNRASNTADTLFQEVLGRKDKADSTRNALNVLQRFKFLFNLPLNIERNIQKGDYD
Sbjct: 241 KLENVLNRASNTADTLFQEVLGRKDKADSTRNALNVLQRFKFLFNLPLNIERNIQKGDYD 300
Query: 301 VVINDYEKAKSLFGKTEVQVFKKYYAEVETRIEALRELLLDKLLETPSTLHDQKRYIRYL 360
VVINDYEKAKSLFGKTEVQVFKKYYAEVETRIEALRELLLDKLLETPSTLHDQKRYIRYL
Sbjct: 301 VVINDYEKAKSLFGKTEVQVFKKYYAEVETRIEALRELLLDKLLETPSTLHDQKRYIRYL 360
Query: 361 SDLHASGDPAWQCIGAQHKWILQLMHSCKEGYVKDLKGNPGLHSPMLDLDNDTRPSVLGH 420
SDLHASGDPAWQCIGAQHKWILQLMHSCKEGYVKDLKGNPGLHSPMLDLDNDTRPSVLGH
Sbjct: 361 SDLHASGDPAWQCIGAQHKWILQLMHSCKEGYVKDLKGNPGLHSPMLDLDNDTRPSVLGH 420
Query: 421 LSQTASLKRGSSFQSGRDDTWRYKTPHRVAFVEKLTKLVLSQLPNFWKLWISYVNGSLFS 480
LSQTASLKRGSSFQSGRDDTWRYKTPHRVAFVEKLTKLVLSQLPNFWKLWISYVNGSLFS
Sbjct: 421 LSQTASLKRGSSFQSGRDDTWRYKTPHRVAFVEKLTKLVLSQLPNFWKLWISYVNGSLFS 480
Query: 481 ETAEKSGQIERSKNVRQRQNDFKKMIQEVMHSLVKLTRGALLPLSIRDGEAKQYGGWEVK 540
ETAEKSGQIERSKNVRQRQNDFKKMIQEVMHSLVKLTRGALLPLSIRDGEAKQYGGWEVK
Sbjct: 481 ETAEKSGQIERSKNVRQRQNDFKKMIQEVMHSLVKLTRGALLPLSIRDGEAKQYGGWEVK 540
Query: 541 CELSGQWLAHAIQTVRLTHESLTALEIPNDLLQTIQDLILDLRVRCVMATLQHTAEEIKR 600
CELSGQWLAHAIQTVRLTHESLTALEIPNDLLQTIQDLILDLRVRCVMATLQHTAEEIKR
Sbjct: 541 CELSGQWLAHAIQTVRLTHESLTALEIPNDLLQTIQDLILDLRVRCVMATLQHTAEEIKR 600
Query: 601 LAEKEDWIVDNEGLTSLPCQFEQCIVCSLQSLKGVLECKPGEASVFQQPKTQEEVCQLSI 660
LAEKEDWIVDNEGLTSLPCQFEQCIVCSLQSLKGVLECKPGEASVFQQPKTQEEVCQLSI
Sbjct: 601 LAEKEDWIVDNEGLTSLPCQFEQCIVCSLQSLKGVLECKPGEASVFQQPKTQEEVCQLSI 660
Query: 661 NIMQVFIYCLEQLSTKPDADIDTTHLSVDVSSPDLFGSIHEDFSLTSEQRLLIVLSNCCY 720
NIMQVFIYCLEQLSTKPDADIDTTHLSVDVSSPDLFGSIHEDFSLTSEQRLLIVLSNCCY
Sbjct: 661 NIMQVFIYCLEQLSTKPDADIDTTHLSVDVSSPDLFGSIHEDFSLTSEQRLLIVLSNCCY 720
Query: 721 LERHTFLNIAEHFEKHNFQGIEKITQVSMASLKELDQRLFENYIELKADPIVGSLEPGIY 780
LERHTFLNIAEHFEKHNFQGIEKITQVSMASLKELDQRLFENYIELKADPIVGSLEPGIY
Sbjct: 721 LERHTFLNIAEHFEKHNFQGIEKITQVSMASLKELDQRLFENYIELKADPIVGSLEPGIY 780
Query: 781 AGYFDWKDCLPPTGVRNYLKEALVNIIAVHAEVFTISKELVPRVLSKVIEAVSEELSRLM 840
AGYFDWKDCLPPTGVRNYLKEALVNIIAVHAEVFTISKELVPRVLSKVIEAVSEELSRLM
Sbjct: 781 AGYFDWKDCLPPTGVRNYLKEALVNIIAVHAEVFTISKELVPRVLSKVIEAVSEELSRLM 840
Query: 841 QCVSSFSKNGALQARLEICALRDTVAVYLTPESKSSFKQALEALPQLSSGADKKLLEELL 900
QCVSSFSKNGALQARLEICALRDTVAVYLTPESKSSFKQALEALPQLSSGADKKLLEELL
Sbjct: 841 QCVSSFSKNGALQARLEICALRDTVAVYLTPESKSSFKQALEALPQLSSGADKKLLEELL 900
Query: 901 NKFKSSMHLQLTCFQAASSTMMKT 924
NKFKSSMHLQLTCFQAASSTMMKT
Sbjct: 901 NKFKSSMHLQLTCFQAASSTMMKT 924
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 43.1 bits (100), Expect = 0.001
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 8 PLVTGISPNEGIP--WTKVTIRGENLGTGPTDLIGL-TICGHNCLLTA-EWMSASKIVCR 63
PL+ + P G T+VTIRG NLG D++G+ T+ G C + A E+ +S +VC
Sbjct: 1070 PLIHSVEPLTGPVDGGTRVTIRGSNLGQHVQDVLGMVTVAGVPCAVDAQEYEVSSSLVCI 1129
Query: 64 VGQAKND-KGDIIVTTKSGGRGTSTVSFKLLKPE 96
G + + G V GRG S F P+
Sbjct: 1130 TGASGEEVAGATAVEVPGRGRGVSEHDFAYQDPK 1163
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 43.1 bits (100), Expect = 0.001
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 8 PLVTGISPNEGIP--WTKVTIRGENLGTGPTDLIGL-TICGHNCLLTA-EWMSASKIVCR 63
PL+ + P G T+VTIRG NLG D++G+ T+ G C + A E+ +S +VC
Sbjct: 1070 PLIHSVEPLTGPVDGGTRVTIRGSNLGQHVQDVLGMVTVAGVPCAVDAQEYEVSSSLVCI 1129
Query: 64 VGQAKND-KGDIIVTTKSGGRGTSTVSFKLLKPE 96
G + + G V GRG S F P+
Sbjct: 1130 TGASGEEVAGATAVEVPGRGRGVSEHDFAYQDPK 1163
>gi|149363636 plexin B2 [Homo sapiens]
Length = 1838
Score = 42.0 bits (97), Expect = 0.003
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 7 PPLVTGISPNEGI--PWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSAS-KIVCR 63
PP++T I P G ++TI G NLG D+ +++ G NC E S S +IVC
Sbjct: 802 PPVITRIQPETGPLGGGIRITILGSNLGVQAGDIQRISVAGRNCSFQPERYSVSTRIVCV 861
Query: 64 VGQAKNDKGDIIVTTKSG--GRGTSTVSFKLLKPEKIGILDQ 103
+ A+ + G GR V F +P+ + + Q
Sbjct: 862 IEAAETPFTGGVEVDVFGKLGRSPPNVQFTFQQPKPLSVEPQ 903
>gi|157738645 plexin A4 isoform 1 [Homo sapiens]
Length = 1894
Score = 39.3 bits (90), Expect = 0.017
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 10 VTGISPNEGIPWTKVTIRGENLGTGPTDLIG-LTICGHNCL-LTAEWMSASKIVCRVGQA 67
VTG P EG TKVTIRGENLG D+ + + G C L ++ A +IVC +G+A
Sbjct: 866 VTG--PREG--GTKVTIRGENLGLEFRDIASHVKVAGVECSPLVDGYIPAEQIVCEMGEA 921
Query: 68 K 68
K
Sbjct: 922 K 922
>gi|59710104 plexin A3 [Homo sapiens]
Length = 1871
Score = 37.4 bits (85), Expect = 0.065
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 13 ISPNEGIPWTKVTIRGENLGTGPTDLIGLTICGHNC-LLTAEWMSASKIVCRVGQA 67
+ P EG T+VTI G+NLG + +GL + G C + AE++SA +IVC + ++
Sbjct: 849 VGPKEG--GTRVTIVGDNLGLLSRE-VGLRVAGVRCNSIPAEYISAERIVCEMEES 901
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 34.7 bits (78), Expect = 0.42
Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 49/212 (23%)
Query: 173 ENHSNTSFEQLKMAVTNLKRQANKKS------EGSLAYVKGGLSTFFEAQDAL------- 219
E H+ S ++L + +KR A+ + + AY + L+ A+DA
Sbjct: 2143 EKHAR-SLQELAKQLEEIKRNASGDELVRCAVDAATAY-ENILNAIKAAEDAANRAASAS 2200
Query: 220 -SAIHQKLEADGTEKVEGSMTQKLENVLNRASNTADTLFQEVLGRKDKADSTRNALNVLQ 278
SA+ ++ D K + +++ + +LN A T L QEV ++ + LN++
Sbjct: 2201 ESALQTVIKEDLPRKAK-TLSSNSDKLLNEAKMTQKKLKQEV---SPALNNLQQTLNIVT 2256
Query: 279 RFKFLFNLPLNIERN----IQKGDYDVVIN-------------------------DYEKA 309
K + + L R+ IQ+GD D +I+ D E+
Sbjct: 2257 VQKEVIDTNLTTLRDGLHGIQRGDIDAMISSAKSMVRKANDITDEVLDGLNPIQTDVERI 2316
Query: 310 KSLFGKTEVQVFKKYYAEVETRIEALRELLLD 341
K +G+T+ + FKK + + + L L D
Sbjct: 2317 KDTYGRTQNEDFKKALTDADNSVNKLTNKLPD 2348
>gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]
Length = 1668
Score = 34.7 bits (78), Expect = 0.42
Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 49/212 (23%)
Query: 173 ENHSNTSFEQLKMAVTNLKRQANKKS------EGSLAYVKGGLSTFFEAQDAL------- 219
E H+ S ++L + +KR A+ + + AY + L+ A+DA
Sbjct: 478 EKHAR-SLQELAKQLEEIKRNASGDELVRCAVDAATAY-ENILNAIKAAEDAANRAASAS 535
Query: 220 -SAIHQKLEADGTEKVEGSMTQKLENVLNRASNTADTLFQEVLGRKDKADSTRNALNVLQ 278
SA+ ++ D K + +++ + +LN A T L QEV ++ + LN++
Sbjct: 536 ESALQTVIKEDLPRKAK-TLSSNSDKLLNEAKMTQKKLKQEV---SPALNNLQQTLNIVT 591
Query: 279 RFKFLFNLPLNIERN----IQKGDYDVVIN-------------------------DYEKA 309
K + + L R+ IQ+GD D +I+ D E+
Sbjct: 592 VQKEVIDTNLTTLRDGLHGIQRGDIDAMISSAKSMVRKANDITDEVLDGLNPIQTDVERI 651
Query: 310 KSLFGKTEVQVFKKYYAEVETRIEALRELLLD 341
K +G+T+ + FKK + + + L L D
Sbjct: 652 KDTYGRTQNEDFKKALTDADNSVNKLTNKLPD 683
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 34.7 bits (78), Expect = 0.42
Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 49/212 (23%)
Query: 173 ENHSNTSFEQLKMAVTNLKRQANKKS------EGSLAYVKGGLSTFFEAQDAL------- 219
E H+ S ++L + +KR A+ + + AY + L+ A+DA
Sbjct: 2087 EKHAR-SLQELAKQLEEIKRNASGDELVRCAVDAATAY-ENILNAIKAAEDAANRAASAS 2144
Query: 220 -SAIHQKLEADGTEKVEGSMTQKLENVLNRASNTADTLFQEVLGRKDKADSTRNALNVLQ 278
SA+ ++ D K + +++ + +LN A T L QEV ++ + LN++
Sbjct: 2145 ESALQTVIKEDLPRKAK-TLSSNSDKLLNEAKMTQKKLKQEV---SPALNNLQQTLNIVT 2200
Query: 279 RFKFLFNLPLNIERN----IQKGDYDVVIN-------------------------DYEKA 309
K + + L R+ IQ+GD D +I+ D E+
Sbjct: 2201 VQKEVIDTNLTTLRDGLHGIQRGDIDAMISSAKSMVRKANDITDEVLDGLNPIQTDVERI 2260
Query: 310 KSLFGKTEVQVFKKYYAEVETRIEALRELLLD 341
K +G+T+ + FKK + + + L L D
Sbjct: 2261 KDTYGRTQNEDFKKALTDADNSVNKLTNKLPD 2292
>gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]
Length = 1724
Score = 34.7 bits (78), Expect = 0.42
Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 49/212 (23%)
Query: 173 ENHSNTSFEQLKMAVTNLKRQANKKS------EGSLAYVKGGLSTFFEAQDAL------- 219
E H+ S ++L + +KR A+ + + AY + L+ A+DA
Sbjct: 534 EKHAR-SLQELAKQLEEIKRNASGDELVRCAVDAATAY-ENILNAIKAAEDAANRAASAS 591
Query: 220 -SAIHQKLEADGTEKVEGSMTQKLENVLNRASNTADTLFQEVLGRKDKADSTRNALNVLQ 278
SA+ ++ D K + +++ + +LN A T L QEV ++ + LN++
Sbjct: 592 ESALQTVIKEDLPRKAK-TLSSNSDKLLNEAKMTQKKLKQEV---SPALNNLQQTLNIVT 647
Query: 279 RFKFLFNLPLNIERN----IQKGDYDVVIN-------------------------DYEKA 309
K + + L R+ IQ+GD D +I+ D E+
Sbjct: 648 VQKEVIDTNLTTLRDGLHGIQRGDIDAMISSAKSMVRKANDITDEVLDGLNPIQTDVERI 707
Query: 310 KSLFGKTEVQVFKKYYAEVETRIEALRELLLD 341
K +G+T+ + FKK + + + L L D
Sbjct: 708 KDTYGRTQNEDFKKALTDADNSVNKLTNKLPD 739
>gi|23503243 Ras association (RalGDS/AF-6) domain family
(N-terminal) member 8 [Homo sapiens]
Length = 392
Score = 34.7 bits (78), Expect = 0.42
Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 235 EGSMTQKLENVLNRASNTADTLFQEVLGRKDKADSTRNAL--NVLQRFKFLFNLPLNIER 292
+G T+ + VLN TAD L + + + +K S L N ++ + N+E
Sbjct: 145 KGKETEFKQKVLNNCKTTADELKKLIRLQTEKLQSIEKQLESNEIEIRFWEQKYNSNLEE 204
Query: 293 NIQKGDYDVVINDYEKAKSLFGKTEVQVFKKYYAEVETRIEALRELLLDKLLETPSTLHD 352
I + + + ND E + F + E+Q+ ++ +++ +++ +R+ K+ E + L D
Sbjct: 205 EIVRLEQKIKRNDVEIEEEEFWENELQIEQENEKQLKDQLQEIRQ----KITECENKLKD 260
Query: 353 QKRYIR 358
IR
Sbjct: 261 YLAQIR 266
>gi|64762445 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
isoform b [Homo sapiens]
Length = 471
Score = 33.1 bits (74), Expect = 1.2
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 622 EQCIVCSLQSLKGVLECKPGEASVFQQPKTQEEVCQLSINIMQ---VFIYCLEQLSTKPD 678
+QC + +L+ +K L + G+ +VF T E + +N + ++ +E + PD
Sbjct: 103 KQCALVALEDVKAYLTEENGQIAVFDATNTTRERRDMILNFAEQNSFKVFFVESVCDDPD 162
Query: 679 ADIDTTHLSVDVSSPD 694
I L V VSSPD
Sbjct: 163 V-IAANILEVKVSSPD 177
>gi|64762406 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
isoform a [Homo sapiens]
Length = 505
Score = 33.1 bits (74), Expect = 1.2
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 622 EQCIVCSLQSLKGVLECKPGEASVFQQPKTQEEVCQLSINIMQ---VFIYCLEQLSTKPD 678
+QC + +L+ +K L + G+ +VF T E + +N + ++ +E + PD
Sbjct: 103 KQCALVALEDVKAYLTEENGQIAVFDATNTTRERRDMILNFAEQNSFKVFFVESVCDDPD 162
Query: 679 ADIDTTHLSVDVSSPD 694
I L V VSSPD
Sbjct: 163 V-IAANILEVKVSSPD 177
>gi|8393009 chromosome 11 open reading frame2 [Homo sapiens]
Length = 782
Score = 32.7 bits (73), Expect = 1.6
Identities = 43/215 (20%), Positives = 83/215 (38%), Gaps = 14/215 (6%)
Query: 159 DFTSENFSAAWYLIENHSNTSFEQLKMAVTNLKRQANKKSEGSLAYVKGGLSTFFEAQDA 218
D +F YL + QL + T++ RQ V + F A D
Sbjct: 62 DLNGAHFDPEVYLDKLRRECPLAQLMDSETDMVRQIRALDSDMQTLVYENYNKFISATDT 121
Query: 219 LSAIHQKLEADGTEKVEGSMTQKLEN--VLNRASNTADTLFQEVLGRKDKADSTRNALNV 276
+ +K++ D K+E M + N V+ S Q+ R ++ +
Sbjct: 122 I----RKMKND-FRKMEDEMDRLATNMAVITDFSARISATLQD---RHERITKLAGVHAL 173
Query: 277 LQRFKFLFNLPLNIERNIQKGDYDVVINDYEKAKSLFGKTE-VQVFKKYYAEVETRIEAL 335
L++ +FLF LP + + ++ G Y + +A+++ + + + F+ + + L
Sbjct: 174 LRKLQFLFELPSRLTKCVELGAYGQAVRYQGRAQAVLQQYQHLPSFRAIQDDCQVITARL 233
Query: 336 RELLLDKLLETPSTLHDQKRYIRYLSDLHASGDPA 370
+ L + E S +Q + L A G+PA
Sbjct: 234 AQQLRQRFREGGSGAPEQAECVELLL---ALGEPA 265
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 32.3 bits (72), Expect = 2.1
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 818 KELVPRVLSKVIEAVSEELSRLMQCVSSFSKNGALQARLEICALRDTVAVYLTPESKSSF 877
+E +P + A +EELS L+ C+ + +N Q L L+ ++ PES
Sbjct: 3489 QEELPEISKTKEAATTEELSELLDCLCQYGENVEKQQLLLTLLLQRIRSIQNVPESSG-- 3546
Query: 878 KQALEALPQLSS-GADKKLLEELLNKFKSSMHLQLTCFQAASS 919
A+E +P + K+ +LL K + + L T Q S
Sbjct: 3547 --AVETVPAFQEITSMKERCNKLLQKVQKNKELVQTEIQERHS 3587
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 32.3 bits (72), Expect = 2.1
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 818 KELVPRVLSKVIEAVSEELSRLMQCVSSFSKNGALQARLEICALRDTVAVYLTPESKSSF 877
+E +P + A +EELS L+ C+ + +N Q L L+ ++ PES
Sbjct: 3489 QEELPEISKTKEAATTEELSELLDCLCQYGENVEKQQLLLTLLLQRIRSIQNVPESSG-- 3546
Query: 878 KQALEALPQLSS-GADKKLLEELLNKFKSSMHLQLTCFQAASS 919
A+E +P + K+ +LL K + + L T Q S
Sbjct: 3547 --AVETVPAFQEITSMKERCNKLLQKVQKNKELVQTEIQERHS 3587
>gi|4505541 USO1 homolog, vesicle docking protein [Homo sapiens]
Length = 962
Score = 31.6 bits (70), Expect = 3.6
Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 8/183 (4%)
Query: 138 EIEKSKFSQKDLEMLFHGMSADFTSENFSAAWYLIENHSNTSFEQLKMAVTNLKRQANKK 197
E+ +S+ ++KD + M + TS + ++ + +LK + LK Q N +
Sbjct: 747 ELLQSQLTEKD--SMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQ 804
Query: 198 SEG--SLAYVKGGLSTFFEAQDALSAIHQKLE---ADGTEKVEGSMTQKLENVLNRASNT 252
S L K L EA + + E A T VEG ++ L+ N
Sbjct: 805 SVEITKLQTEKQELLQKTEAFAKSVEVQGETETIIATKTTDVEGRLSALLQET-KELKNE 863
Query: 253 ADTLFQEVLGRKDKADSTRNALNVLQRFKFLFNLPLNIERNIQKGDYDVVINDYEKAKSL 312
L +E K++ DS+ + + +LQ K L + + Q ++ + +K SL
Sbjct: 864 IKALSEERTAIKEQLDSSNSTIAILQTEKDKLELEITDSKKEQDDLLVLLADQDQKILSL 923
Query: 313 FGK 315
K
Sbjct: 924 KNK 926
>gi|7705720 mediator of cell motility 1 isoform 1 [Homo sapiens]
Length = 297
Score = 31.2 bits (69), Expect = 4.7
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 696 FGSIHEDFSLTSEQRLLIVLSNCCYLERHTFLNIAEHFEKHNFQGIEKITQVSMASLKEL 755
FG + + L L +V S+ C+ + + + + ++ IE + ++ M+ +++L
Sbjct: 169 FGKLFSKY-LADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQL 227
Query: 756 DQRLFENYIELKADPIVGSLEPGI 779
D F NY++ + I G G+
Sbjct: 228 DPVSFSNYLKKYHNTICGRHPIGV 251
>gi|212286159 mediator of cell motility 1 isoform 2 [Homo sapiens]
Length = 274
Score = 31.2 bits (69), Expect = 4.7
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 696 FGSIHEDFSLTSEQRLLIVLSNCCYLERHTFLNIAEHFEKHNFQGIEKITQVSMASLKEL 755
FG + + L L +V S+ C+ + + + + ++ IE + ++ M+ +++L
Sbjct: 146 FGKLFSKY-LADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQL 204
Query: 756 DQRLFENYIELKADPIVGSLEPGI 779
D F NY++ + I G G+
Sbjct: 205 DPVSFSNYLKKYHNTICGRHPIGV 228
>gi|126116589 fibrocystin L [Homo sapiens]
Length = 4243
Score = 31.2 bits (69), Expect = 4.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 8 PLVTGISPNEGIPWTKVTIRGENLGTGPTDL 38
P +TG+ PN I KV I GE LGT D+
Sbjct: 1749 PYITGVFPNSVIGSVKVLIEGEGLGTVLEDI 1779
>gi|229331967 RIO kinase 2 isoform 1 [Homo sapiens]
Length = 552
Score = 30.8 bits (68), Expect = 6.1
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 171 LIENHSNTSFEQLKMAVTNLKRQANKKSEGSLAYVKGGLSTFFEAQDALSAIHQKLEADG 230
++EN+S T F + K N RQ ++ +G + ALS+++++
Sbjct: 407 VVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFR 466
Query: 231 TEKVEGSMTQKLENVLNRASN----TADTLFQEVLGRKDKADSTRNALNVLQR 279
E+ G+M Q L+ S+ + T+ E++ +K K T+ + ++R
Sbjct: 467 DEENVGAMNQYRTRTLSITSSGSAVSCSTIPPELVKQKVKRQLTKQQKSAVRR 519
>gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]
Length = 4646
Score = 30.8 bits (68), Expect = 6.1
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
Query: 489 IERSKNVRQRQNDFKKMIQEVMHSLVKLTRGALLPLSIRDGEAKQYGGWEVKCELS---- 544
I SKNV + Q FKKM V ++ +L +S R+GE + K +S
Sbjct: 1641 IGNSKNVAKLQKHFKKMFAGVSSIILNEDNSVVLGISSREGEEVMF-----KTPVSITEH 1695
Query: 545 ---GQWLAHAIQTVRLT-----HESLTALEI 567
+WL + +R+T ES+T +EI
Sbjct: 1696 PKINEWLTLVEKEMRVTLAKLLAESVTEVEI 1726
>gi|120587023 down-regulated in metastasis [Homo sapiens]
Length = 2785
Score = 30.4 bits (67), Expect = 7.9
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 16/143 (11%)
Query: 490 ERSKNVRQRQNDFKKMIQEVMHSL----VKLTRGALLPLSIRDGEAKQYGGWEVKCELSG 545
E+ + V Q + K ++ + HS VKL L P++ E + +L
Sbjct: 219 EKVEGVGQLLFEMCKGVRNMFHSCTGQAVKLILRKLGPVT------------ETETQLPW 266
Query: 546 QWLAHAIQTVRLTHESLTALEIPNDLLQTIQDLILDLRVRCVMATLQHTAEEIKRLAEKE 605
+ ++ + + S + E + +Q+ +LDL + ++E+IKRL E
Sbjct: 267 MLIGETLKNMVKSTVSYISKEHFGTFFECLQESLLDLHTKVTKTNCCESSEQIKRLLETY 326
Query: 606 DWIVDNEGLTSLPCQFEQCIVCS 628
+V + T +P + C V S
Sbjct: 327 LILVKHGSGTKIPTPADVCKVLS 349
>gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name
family member (tag-184) [Homo sapiens]
Length = 2785
Score = 30.4 bits (67), Expect = 7.9
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 16/143 (11%)
Query: 490 ERSKNVRQRQNDFKKMIQEVMHSL----VKLTRGALLPLSIRDGEAKQYGGWEVKCELSG 545
E+ + V Q + K ++ + HS VKL L P++ E + +L
Sbjct: 219 EKVEGVGQLLFEMCKGVRNMFHSCTGQAVKLILRKLGPVT------------ETETQLPW 266
Query: 546 QWLAHAIQTVRLTHESLTALEIPNDLLQTIQDLILDLRVRCVMATLQHTAEEIKRLAEKE 605
+ ++ + + S + E + +Q+ +LDL + ++E+IKRL E
Sbjct: 267 MLIGETLKNMVKSTVSYISKEHFGTFFECLQESLLDLHTKVTKTNCCESSEQIKRLLETY 326
Query: 606 DWIVDNEGLTSLPCQFEQCIVCS 628
+V + T +P + C V S
Sbjct: 327 LILVKHGSGTKIPTPADVCKVLS 349
>gi|24430181 outer dense fiber of sperm tails 2 isoform 1 [Homo
sapiens]
Length = 805
Score = 30.4 bits (67), Expect = 7.9
Identities = 34/183 (18%), Positives = 73/183 (39%), Gaps = 20/183 (10%)
Query: 184 KMAVTNLKRQANKKSEGSLAYVKGGLSTFFEAQDALSAIHQKLEADGTEKVEGSMTQKLE 243
K+ + K QA++K L+ L EA A + ++ A E + S +LE
Sbjct: 620 KLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQL-RLE 678
Query: 244 NVLNRASNTADTLFQEVLGRKDKADSTRNALNVLQRFKFLFNLPLNIERNIQKGDYDVVI 303
A L + + + + T+ + L + + N L++E + +
Sbjct: 679 EKTRECGTLARQLESAIEDARRQVEQTKE--HALSKERAAQNKILDLETQLSRT------ 730
Query: 304 NDYEKAKSLFGKTEVQVFKKYYAEVETRIEALRELLLDKLLETPSTLHDQKRYIRYLSDL 363
KTE+ ++ + + R ++ + L D+L ++ ST + Y+++L
Sbjct: 731 -----------KTELSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSS 779
Query: 364 HAS 366
+A+
Sbjct: 780 YAN 782
>gi|7661880 centaurin beta1 [Homo sapiens]
Length = 740
Score = 30.4 bits (67), Expect = 7.9
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 296 KGDYDVVINDYEKAKSLFGKTEVQVFKKYYAEVETRIEALRELLLDKLLETPSTLHDQKR 355
K D++ + D + ++ E +V +E+ETR+E L +L L L +
Sbjct: 4 KLDFEECLKDSPRFRASIELVEAEV-----SELETRLEKLLKLGTGLLESGRHYLAASRA 58
Query: 356 YIRYLSDLHASGDPAWQCIGAQHKWILQLMHSCKEGYVKDLKGNPGLHSPMLDLDNDTRP 415
++ + DL G P +M C E + L H+ +LD T
Sbjct: 59 FVVGICDLARLGPPE------------PMMAECLEKFTVSLNHKLDSHAELLDATQHT-- 104
Query: 416 SVLGHLSQTASLKRGSSFQSGRDDTWR 442
L QT + F+ R D WR
Sbjct: 105 --LQQQIQTLVKEGLRGFREARRDFWR 129
>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 1910
Score = 30.4 bits (67), Expect = 7.9
Identities = 37/173 (21%), Positives = 75/173 (43%), Gaps = 24/173 (13%)
Query: 196 KKSEGSLAYVK---------GGLSTFFEAQDALSAIHQKLEADGTEKVEGSMTQKLENVL 246
K E L+Y++ G + + A++ +S + L++ GT+++E + ++++ L
Sbjct: 636 KTEEELLSYIRENYQKTVATGEIMLYACARNMISTVKMFLKSKGTKELEVNCLNQVKSSL 695
Query: 247 NRASNTADTLFQEVLGRK-DKADSTRNA-LNVLQRFKFLFNLPLNIERNIQKGDYDVVIN 304
+ S + ++ LG+K DK D R L V R + P N D + V+
Sbjct: 696 LKTSKS----LRQNLGKKLDKEDKVRECQLQVFLRLEMCLQCP---SINESTDDMEQVVE 748
Query: 305 DYEKAKSLFGKTEVQVFKKYYAEVETRIEALRELLLDKLLETPSTLHDQKRYI 357
+ + TE Y AE +E + L +D + +T L++ ++
Sbjct: 749 EVTDLLRMVCLTEDSA---YLAEF---LEEILRLYIDSIPKTLGNLYNSLGFV 795
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,536,752
Number of Sequences: 37866
Number of extensions: 1449135
Number of successful extensions: 3841
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3812
Number of HSP's gapped (non-prelim): 47
length of query: 924
length of database: 18,247,518
effective HSP length: 112
effective length of query: 812
effective length of database: 14,006,526
effective search space: 11373299112
effective search space used: 11373299112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.