Guide to the Human Genome
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Name: PLXNB2 Sequence: fasta or formatted (1838aa) NCBI GI: 149363636
Description:

plexin B2

Referenced in:

Semaphorins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7        123           3
 C cysteine            2.6         48           1
 D aspartate           5.5        101           2
 E glutamate           6.7        123           3
 F phenylalanine       3.8         70           2
 G glycine             6.5        119           3
 H histidine           2.4         45           1
 I isoleucine          3.8         70           2
 K lysine              4.7         87           2
 L leucine             9.9        182           4
 M methionine          1.7         32           1
 N asparagine          3.8         69           2
 P proline             5.9        109           3
 Q glutamine           5.0         92           2
 R arginine            5.7        105           2
 S serine              6.7        124           2
 T threonine           6.0        110           2
 V valine              8.1        149           3
 W tryptophan          0.9         17           1
 Y tyrosine            3.4         63           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plexin B2 
PLXNB3                0.320   plexin B3 isoform 2 
PLXNB3                0.320   plexin B3 isoform 1 
PLXNB1                0.260   plexin B1 
PLXNB1                0.260   plexin B1 
PLXNA4                0.246   plexin A4 isoform 1 
PLXNA1                0.245   plexin A1 
PLXND1                0.244   plexin D1 
PLXNA2                0.243   plexin A2 
PLXNA3                0.234   plexin A3 
PLXNC1                0.103   plexin C1 
PLXNA4                0.036   plexin A4 isoform 2 
PLXNA4                0.035   plexin A4 isoform 3 
MST1R                 0.023   macrophage stimulating 1 receptor precursor 
MET                   0.019   met proto-oncogene isoform b precursor 
MET                   0.019   met proto-oncogene isoform a precursor 
SEMA6C                0.013   semaphorin Y 
SEMA6B                0.013   semaphorin 6B precursor 
SEMA4A                0.012   semaphorin B 
SEMA6D                0.011   semaphorin 6D isoform 1 precursor 
SEMA6D                0.011   semaphorin 6D isoform 5 precursor 
SEMA6D                0.011   semaphorin 6D isoform 4 precursor 
SEMA6D                0.011   semaphorin 6D isoform 3 precursor 
SEMA6D                0.011   semaphorin 6D isoform 2 precursor 
SEMA4G                0.011   semaphorin 4G 
SEMA5B                0.011   semaphorin 5B isoform 1 
SEMA4B                0.010   semaphorin 4B precursor 
SEMA4B                0.010   semaphorin 4B precursor 
SEMA4C                0.010   semaphorin 4C 
SEMA3B                0.009   semaphorin 3B isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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