Guide to the Human Genome
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Name: EXOC2 Sequence: fasta or formatted (924aa) NCBI GI: 21361625
Description:

Sec5 protein

Referenced in:

Ran and Rag
ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         55           2
 C cysteine            2.1         19           2
 D aspartate           5.0         46           2
 E glutamate           7.5         69           2
 F phenylalanine       3.7         34           2
 G glycine             5.4         50           2
 H histidine           2.4         22           1
 I isoleucine          5.4         50           2
 K lysine              7.5         69           2
 L leucine            12.2        113           3
 M methionine          2.1         19           2
 N asparagine          4.1         38           1
 P proline             3.5         32           2
 Q glutamine           5.3         49           2
 R arginine            4.3         40           1
 S serine              8.4         78           2
 T threonine           5.7         53           2
 V valine              5.8         54           2
 W tryptophan          1.4         13           1
 Y tyrosine            2.3         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Sec5 protein 
PLXNB1                0.010   plexin B1 
PLXNB1                0.010   plexin B1 
PLXNB2                0.009   plexin B2 
PLXNA4                0.008   plexin A4 isoform 1 
PLXNA3                0.007   plexin A3 
LAMA3                 0.006   laminin alpha 3 subunit isoform 1 
LAMA3                 0.006   laminin alpha 3 subunit isoform 4 
LAMA3                 0.006   laminin alpha 3 subunit isoform 3 
LAMA3                 0.006   laminin alpha 3 subunit isoform 2 
RASSF8                0.006   Ras association (RalGDS/AF-6) domain family (N-termi...
PFKFB2                0.004   6-phosphofructo-2-kinase/fructose-2,6-biphosphatase ...
PFKFB2                0.004   6-phosphofructo-2-kinase/fructose-2,6-biphosphatase ...
C11orf2               0.004   chromosome 11 open reading frame2 
SYNE2                 0.004   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.004   spectrin repeat containing, nuclear envelope 2 isof...
USO1                  0.004   USO1 homolog, vesicle docking protein 
MEMO1                 0.003   mediator of cell motility 1 isoform 1 
MEMO1                 0.003   mediator of cell motility 1 isoform 2 
PKHD1L1               0.003   fibrocystin L 
RIOK2                 0.003   RIO kinase 2 isoform 1 
DYNC1H1               0.003   cytoplasmic dynein 1 heavy chain 1 
UTP20                 0.003   down-regulated in metastasis 
LOC653877             0.003   PREDICTED: similar to Temporarily Assigned Gene name...
ODF2                  0.003   outer dense fiber of sperm tails 2 isoform 1 
ACAP1                 0.003   centaurin beta1 
C15orf42              0.003   leucine-rich repeat kinase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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