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Search of human proteins with 21361539
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens]
(245 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens] 521 e-148
gi|38045934 ring finger protein 138 isoform 2 [Homo sapiens] 244 6e-65
gi|30520320 ring finger protein 166 [Homo sapiens] 139 3e-33
gi|8923898 zinc finger protein 313 [Homo sapiens] 133 2e-31
gi|37595555 ring finger protein 125 [Homo sapiens] 103 1e-22
gi|46852178 potassium channel modulatory factor 1 [Homo sapiens] 60 2e-09
gi|4557841 recombination activating gene 1 [Homo sapiens] 55 4e-08
gi|6005747 ring finger protein 2 [Homo sapiens] 54 2e-07
gi|51479192 ring finger protein 1 [Homo sapiens] 54 2e-07
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 53 2e-07
gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] 53 3e-07
gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens] 53 3e-07
gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens] 53 3e-07
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 53 3e-07
gi|87241872 ring finger protein 151 [Homo sapiens] 51 8e-07
gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens] 48 7e-06
gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens] 48 7e-06
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 46 3e-05
gi|22027616 TNF receptor-associated factor 3 isoform 1 [Homo sap... 46 3e-05
gi|22027620 TNF receptor-associated factor 3 isoform 2 [Homo sap... 46 3e-05
gi|22027618 TNF receptor-associated factor 3 isoform 1 [Homo sap... 46 3e-05
gi|165932346 ring finger protein 180 isoform 1 [Homo sapiens] 46 3e-05
gi|239048909 checkpoint with forkhead and ring finger domains is... 45 6e-05
gi|239048905 checkpoint with forkhead and ring finger domains is... 45 6e-05
gi|239048862 checkpoint with forkhead and ring finger domains is... 45 6e-05
gi|239048792 checkpoint with forkhead and ring finger domains is... 45 6e-05
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 45 6e-05
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 45 6e-05
gi|239048907 checkpoint with forkhead and ring finger domains is... 45 6e-05
gi|20162564 tripartite motif-containing 40 [Homo sapiens] 45 6e-05
>gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens]
Length = 245
Score = 521 bits (1342), Expect = e-148
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGN 60
MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGN
Sbjct: 1 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGN 60
Query: 61 VTRRERACPERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIPN 120
VTRRERACPERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIPN
Sbjct: 61 VTRRERACPERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIPN 120
Query: 121 FQISQDSVGNSNRSETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNH 180
FQISQDSVGNSNRSETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNH
Sbjct: 121 FQISQDSVGNSNRSETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNH 180
Query: 181 LFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES 240
LFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES
Sbjct: 181 LFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES 240
Query: 241 FQVNI 245
FQVNI
Sbjct: 241 FQVNI 245
>gi|38045934 ring finger protein 138 isoform 2 [Homo sapiens]
Length = 151
Score = 244 bits (622), Expect = 6e-65
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 132 NRSETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPI 191
NRSETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPI
Sbjct: 38 NRSETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPI 97
Query: 192 CVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEESFQVNI 245
CVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEESFQVNI
Sbjct: 98 CVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEESFQVNI 151
Score = 83.6 bits (205), Expect = 1e-16
Identities = 46/77 (59%), Positives = 51/77 (66%), Gaps = 11/77 (14%)
Query: 1 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRE-------SGAH 53
MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHV + + E S H
Sbjct: 1 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVNRSETSTSDNTETYQENTSSSGH 60
Query: 54 ----CPLCRGNVTRRER 66
CPLC+ + R+R
Sbjct: 61 PTFKCPLCQESNFTRQR 77
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 139 bits (349), Expect = 3e-33
Identities = 77/234 (32%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 13 EDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPERA 72
E + CP+C EV PV +C H FC +C ++ CPLCR ++ ++A
Sbjct: 28 EAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFDPKK---VDKA 84
Query: 73 LDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYG-VSSIIPNFQISQDSVGN- 130
+E + + CR C K++ +MR H SC K Q++ +P SQ N
Sbjct: 85 THVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKVQEQMANCPKFVPVVPTSQPIPSNI 144
Query: 131 SNRSETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCP 190
NRS TF CP C N +Q L+ HC +H V CP
Sbjct: 145 PNRS---------------------TFACPYCGARNLDQQELVKHCVESHRSDPNRVVCP 183
Query: 191 ICVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEESFQVN 244
IC ++PWGDPS + NF+ HL RH+F Y FV+ +DEE +Q A+ S N
Sbjct: 184 ICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN 237
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 133 bits (334), Expect = 2e-31
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 31/227 (13%)
Query: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPERALDL 75
F CPVC EV + PV+ C HVFC C ++ C +CR + A RA++L
Sbjct: 27 FTCPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSAL-----APGVRAVEL 80
Query: 76 ENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEY--GVSSIIPNFQISQDSVGNSNR 133
E + SC C K ++R H +C KYQ+ GV + I + + +V N
Sbjct: 81 ERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPRNVPNRY- 139
Query: 134 SETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICV 193
TF CP C E NF ++ L++HC H V CPIC
Sbjct: 140 ----------------------TFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICA 177
Query: 194 SLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES 240
S+PWGDP+ + NF H+ +RH+F Y FV+ +DEE ++ S
Sbjct: 178 SMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRS 224
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 103 bits (257), Expect = 1e-22
Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 38/225 (16%)
Query: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPERALDL 75
F C VC EVL PVRT C HVFCR C T+++ + CP CR + P A D+
Sbjct: 35 FDCAVCLEVLHQPVRTR-CGHVFCRSCIATSLKNNKWTCPYCRAYLP--SEGVP--ATDV 89
Query: 76 ENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIPNFQISQDSVGNSNRSE 135
M+ +C C + MR H ++C+KY D+YG
Sbjct: 90 AKRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYG---------------------- 127
Query: 136 TSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSL 195
QE ++ CP CQ + LLDHC ++H + PV CP+C +
Sbjct: 128 --------PLQELEETAARCV--CPFCQRELY-EDSLLDHCITHHRSERRPVFCPLCRLI 176
Query: 196 PWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES 240
P +PS + + + HL H Y +F++ + EE + ++ S
Sbjct: 177 PDENPSSFSGSLIRHLQVSHTLFYDDFIDFNIIEEALIRRVLDRS 221
>gi|46852178 potassium channel modulatory factor 1 [Homo sapiens]
Length = 381
Score = 60.1 bits (144), Expect = 2e-09
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 156 TFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRH 215
+F CP C + +T L +H S H V CPIC +LP GDP+ +T +F +HL H
Sbjct: 77 SFTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
Query: 216 Q 216
+
Sbjct: 137 R 137
>gi|4557841 recombination activating gene 1 [Homo sapiens]
Length = 1043
Score = 55.5 bits (132), Expect = 4e-08
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 19/102 (18%)
Query: 18 CPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPERALDLEN 77
C +C+ +L PV T C+HVFCR C L ++ G++CP CR P DLE+
Sbjct: 293 CQICEHILADPVETN-CKHVFCRVCILRCLKVMGSYCPSCR---------YPCFPTDLES 342
Query: 78 IMRKF-----SGSCRC----CAKQIKFYRMRHHYKSCKKYQD 110
++ F S +C C +++ + HH S K+ ++
Sbjct: 343 PVKSFLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESKE 384
>gi|6005747 ring finger protein 2 [Homo sapiens]
Length = 336
Score = 53.5 bits (127), Expect = 2e-07
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 15 DFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPERALD 74
+ CP+C ++LK + T C H FC C +TA+R CP CR + + P+ D
Sbjct: 48 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFD 107
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 53.5 bits (127), Expect = 2e-07
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 4 DLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTR 63
+++ + + CP+C ++LK + T C H FC C +TA+R CP CR +
Sbjct: 34 EIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVS 93
Query: 64 RERACPERALD 74
+ P+ D
Sbjct: 94 KRSLRPDPNFD 104
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 53.1 bits (126), Expect = 2e-07
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 1 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGN 60
M +L + D C +C +VL+ P+ TT C HVFC C L + + G+ CRG
Sbjct: 1 MGFELDRFDGDVDPDLKCALCHKVLEDPL-TTPCGHVFCAGCVLPWVVQEGSCPARCRGR 59
Query: 61 VTRRERACPERALDLENIMRKFSGSC----RCCAKQIKFYRMRHHYKSC 105
++ +E L L+ ++ K C R C + +K ++ H + C
Sbjct: 60 LSAKEL---NHVLPLKRLILKLDIKCAYATRGCGRVVKLQQLPEHLERC 105
>gi|237681119 breast cancer 1, early onset isoform 2 [Homo
sapiens]
Length = 1884
Score = 52.8 bits (125), Expect = 3e-07
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 18 CPVCQEVLKTPVRTTACQHVFCRKCFLTAM--RESGAHCPLCRGNVTRR 64
CP+C E++K PV +T C H+FC+ C L + ++ + CPLC+ ++T+R
Sbjct: 24 CPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71
>gi|237681125 breast cancer 1, early onset isoform 5 [Homo
sapiens]
Length = 699
Score = 52.8 bits (125), Expect = 3e-07
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 18 CPVCQEVLKTPVRTTACQHVFCRKCFLTAM--RESGAHCPLCRGNVTRR 64
CP+C E++K PV +T C H+FC+ C L + ++ + CPLC+ ++T+R
Sbjct: 24 CPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71
>gi|237681123 breast cancer 1, early onset isoform 4 [Homo
sapiens]
Length = 759
Score = 52.8 bits (125), Expect = 3e-07
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 18 CPVCQEVLKTPVRTTACQHVFCRKCFLTAM--RESGAHCPLCRGNVTRR 64
CP+C E++K PV +T C H+FC+ C L + ++ + CPLC+ ++T+R
Sbjct: 24 CPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 52.8 bits (125), Expect = 3e-07
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 18 CPVCQEVLKTPVRTTACQHVFCRKCFLTAM--RESGAHCPLCRGNVTRR 64
CP+C E++K PV +T C H+FC+ C L + ++ + CPLC+ ++T+R
Sbjct: 24 CPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 51.2 bits (121), Expect = 8e-07
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 4 DLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTR 63
DL+ S + +F C VC VLK P R C H+FC+KC L + CP CR V R
Sbjct: 6 DLNLFASPPDSNFVCSVCHGVLKRPAR-LPCSHIFCKKCILRWLARQKT-CPCCRKEVKR 63
Query: 64 RE 65
++
Sbjct: 64 KK 65
>gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 48.1 bits (113), Expect = 7e-06
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 1 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGN 60
M D++ ++D CP+C VL+ PV+ C+H FC C +T CP+ R
Sbjct: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNAC-ITQWFSQQQTCPVDRSV 59
Query: 61 VTRRERACPERALDLENIMRKFSGSCR----CCAKQIKFYRMRHHYKSCK 106
VT R + N++ K +C C+ ++ + H C+
Sbjct: 60 VTVAHLRPVPRI--MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCE 107
>gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 48.1 bits (113), Expect = 7e-06
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 1 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGN 60
M D++ ++D CP+C VL+ PV+ C+H FC C +T CP+ R
Sbjct: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNAC-ITQWFSQQQTCPVDRSV 59
Query: 61 VTRRERACPERALDLENIMRKFSGSCR----CCAKQIKFYRMRHHYKSCK 106
VT R + N++ K +C C+ ++ + H C+
Sbjct: 60 VTVAHLRPVPRI--MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCE 107
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 45.8 bits (107), Expect = 3e-05
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 6 SAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVT 62
S S DF C +C +L PV TT C H FC KC L + HCPLC+ ++
Sbjct: 437 SQGLSLDVTDFECALCMRLLFEPV-TTPCGHTFCLKC-LERCLDHAPHCPLCKDKLS 491
>gi|22027616 TNF receptor-associated factor 3 isoform 1 [Homo
sapiens]
Length = 568
Score = 45.8 bits (107), Expect = 3e-05
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 13 EDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTR----RERAC 68
ED + C C VL +P + T C H FC C + S C C+ ++ + ++ C
Sbjct: 48 EDKYKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVFKDNCC 106
Query: 69 PERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKS 104
L L+ R S R CA+Q+ + H K+
Sbjct: 107 KREILALQIYCRNES---RGCAEQLMLGHLLVHLKN 139
>gi|22027620 TNF receptor-associated factor 3 isoform 2 [Homo
sapiens]
Length = 543
Score = 45.8 bits (107), Expect = 3e-05
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 13 EDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTR----RERAC 68
ED + C C VL +P + T C H FC C + S C C+ ++ + ++ C
Sbjct: 48 EDKYKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVFKDNCC 106
Query: 69 PERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKS 104
L L+ R S R CA+Q+ + H K+
Sbjct: 107 KREILALQIYCRNES---RGCAEQLMLGHLLVHLKN 139
>gi|22027618 TNF receptor-associated factor 3 isoform 1 [Homo
sapiens]
Length = 568
Score = 45.8 bits (107), Expect = 3e-05
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 13 EDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTR----RERAC 68
ED + C C VL +P + T C H FC C + S C C+ ++ + ++ C
Sbjct: 48 EDKYKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVFKDNCC 106
Query: 69 PERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKS 104
L L+ R S R CA+Q+ + H K+
Sbjct: 107 KREILALQIYCRNES---RGCAEQLMLGHLLVHLKN 139
>gi|165932346 ring finger protein 180 isoform 1 [Homo sapiens]
Length = 592
Score = 45.8 bits (107), Expect = 3e-05
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 1 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRE--SGAHCPLCR 58
M+ D + +D + C VC +V P C H+FC C T ++ S CPLCR
Sbjct: 415 MSTDEDNEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCR 474
Query: 59 GNVTR 63
++R
Sbjct: 475 TIISR 479
>gi|239048909 checkpoint with forkhead and ring finger domains
isoform 5 [Homo sapiens]
Length = 572
Score = 45.1 bits (105), Expect = 6e-05
Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 34/172 (19%)
Query: 3 EDLSAATSYT---EDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRG 59
ED+ AA E+ C +CQ++L V C H FC C+ + E + CP CR
Sbjct: 194 EDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACY-SGWMERSSLCPTCRC 252
Query: 60 NVTRRERACPERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIP 119
V ER C L+ ++ Y ++H KS + E V S+
Sbjct: 253 PV---ERICKNHILN----------------NLVEAYLIQHPDKS----RSEEDVQSMDA 289
Query: 120 NFQISQDSVGNSNR-----SETSTSDNTETYQENTSSS--GHPTFKCPLCQE 164
+I+QD + R E S+ D E ++ SS P C C E
Sbjct: 290 RNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCPE 341
>gi|239048905 checkpoint with forkhead and ring finger domains
isoform 3 [Homo sapiens]
Length = 652
Score = 45.1 bits (105), Expect = 6e-05
Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 34/172 (19%)
Query: 3 EDLSAATSYT---EDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRG 59
ED+ AA E+ C +CQ++L V C H FC C+ + E + CP CR
Sbjct: 274 EDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACY-SGWMERSSLCPTCRC 332
Query: 60 NVTRRERACPERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIP 119
V ER C L+ ++ Y ++H KS + E V S+
Sbjct: 333 PV---ERICKNHILN----------------NLVEAYLIQHPDKS----RSEEDVQSMDA 369
Query: 120 NFQISQDSVGNSNR-----SETSTSDNTETYQENTSSS--GHPTFKCPLCQE 164
+I+QD + R E S+ D E ++ SS P C C E
Sbjct: 370 RNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCPE 421
>gi|239048862 checkpoint with forkhead and ring finger domains
isoform 2 [Homo sapiens]
Length = 663
Score = 45.1 bits (105), Expect = 6e-05
Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 34/172 (19%)
Query: 3 EDLSAATSYT---EDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRG 59
ED+ AA E+ C +CQ++L V C H FC C+ + E + CP CR
Sbjct: 286 EDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACY-SGWMERSSLCPTCRC 344
Query: 60 NVTRRERACPERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIP 119
V ER C L+ ++ Y ++H KS + E V S+
Sbjct: 345 PV---ERICKNHILN----------------NLVEAYLIQHPDKS----RSEEDVQSMDA 381
Query: 120 NFQISQDSVGNSNR-----SETSTSDNTETYQENTSSS--GHPTFKCPLCQE 164
+I+QD + R E S+ D E ++ SS P C C E
Sbjct: 382 RNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCPE 433
>gi|239048792 checkpoint with forkhead and ring finger domains
isoform 1 [Homo sapiens]
Length = 664
Score = 45.1 bits (105), Expect = 6e-05
Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 34/172 (19%)
Query: 3 EDLSAATSYT---EDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRG 59
ED+ AA E+ C +CQ++L V C H FC C+ + E + CP CR
Sbjct: 286 EDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACY-SGWMERSSLCPTCRC 344
Query: 60 NVTRRERACPERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIP 119
V ER C L+ ++ Y ++H KS + E V S+
Sbjct: 345 PV---ERICKNHILN----------------NLVEAYLIQHPDKS----RSEEDVQSMDA 381
Query: 120 NFQISQDSVGNSNR-----SETSTSDNTETYQENTSSS--GHPTFKCPLCQE 164
+I+QD + R E S+ D E ++ SS P C C E
Sbjct: 382 RNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCPE 433
>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
isoform 1 [Homo sapiens]
Length = 793
Score = 45.1 bits (105), Expect = 6e-05
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 10 SYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTR 63
S E+ F C CQE++ P+ TT CQH C+ C + R CP CR ++ R
Sbjct: 716 SKVEETFQCICCQELVFRPI-TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 768
>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
isoform 2 [Homo sapiens]
Length = 806
Score = 45.1 bits (105), Expect = 6e-05
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 10 SYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTR 63
S E+ F C CQE++ P+ TT CQH C+ C + R CP CR ++ R
Sbjct: 729 SKVEETFQCICCQELVFRPI-TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 781
>gi|239048907 checkpoint with forkhead and ring finger domains
isoform 4 [Homo sapiens]
Length = 623
Score = 45.1 bits (105), Expect = 6e-05
Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 34/172 (19%)
Query: 3 EDLSAATSYT---EDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRG 59
ED+ AA E+ C +CQ++L V C H FC C+ + E + CP CR
Sbjct: 245 EDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACY-SGWMERSSLCPTCRC 303
Query: 60 NVTRRERACPERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIP 119
V ER C L+ ++ Y ++H KS + E V S+
Sbjct: 304 PV---ERICKNHILN----------------NLVEAYLIQHPDKS----RSEEDVQSMDA 340
Query: 120 NFQISQDSVGNSNR-----SETSTSDNTETYQENTSSS--GHPTFKCPLCQE 164
+I+QD + R E S+ D E ++ SS P C C E
Sbjct: 341 RNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCPE 392
>gi|20162564 tripartite motif-containing 40 [Homo sapiens]
Length = 229
Score = 45.1 bits (105), Expect = 6e-05
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 13 EDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAH----CPLCR 58
+++ CP+CQE LK V +T C H+FCR C + ++ A CPLCR
Sbjct: 9 QEEGVCPICQESLKEAV-STNCGHLFCRVCLTQHVEKASASGVFCCPLCR 57
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.132 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,538,052
Number of Sequences: 37866
Number of extensions: 427135
Number of successful extensions: 2393
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 248
Number of HSP's that attempted gapping in prelim test: 2150
Number of HSP's gapped (non-prelim): 461
length of query: 245
length of database: 18,247,518
effective HSP length: 100
effective length of query: 145
effective length of database: 14,460,918
effective search space: 2096833110
effective search space used: 2096833110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.