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Search of human proteins with 21359924
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21359924 transmembrane protein 48 [Homo sapiens]
(674 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21359924 transmembrane protein 48 [Homo sapiens] 1359 0.0
gi|6679074 nucleoporin like 2 [Homo sapiens] 34 0.39
gi|63054866 leucine rich repeat containing 16A [Homo sapiens] 33 0.66
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens] 33 0.86
gi|239752529 PREDICTED: similar to mucin [Homo sapiens] 32 1.5
gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens] 32 1.5
gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens] 32 1.5
gi|195963418 tubulin tyrosine ligase-like family, member 6 isofo... 32 1.5
gi|195963416 tubulin tyrosine ligase-like family, member 6 isofo... 32 1.5
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 32 1.9
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 32 1.9
gi|119943102 CREB binding protein isoform b [Homo sapiens] 32 2.5
gi|119943104 CREB binding protein isoform a [Homo sapiens] 32 2.5
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 32 2.5
gi|62460633 RNA-binding motif protein 16 [Homo sapiens] 32 2.5
gi|239758058 PREDICTED: similar to mucin, partial [Homo sapiens] 31 3.3
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 31 3.3
gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens] 31 3.3
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 31 4.3
gi|4506537 receptor-interacting serine-threonine kinase 2 [Homo ... 31 4.3
gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens] 31 4.3
gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens] 31 4.3
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 31 4.3
gi|22027541 programmed cell death 7 [Homo sapiens] 31 4.3
gi|4503493 early growth response 1 [Homo sapiens] 30 5.6
gi|144226234 metastasis suppressor 1 [Homo sapiens] 30 5.6
gi|21536376 ATP-binding cassette, sub-family A member 1 [Homo sa... 30 7.3
gi|30795231 brain abundant, membrane attached signal protein 1 [... 30 7.3
gi|38569480 megakaryoblastic leukemia 2 protein [Homo sapiens] 30 7.3
gi|116174780 SEC24 related gene family, member A [Homo sapiens] 30 7.3
>gi|21359924 transmembrane protein 48 [Homo sapiens]
Length = 674
Score = 1359 bits (3518), Expect = 0.0
Identities = 674/674 (100%), Positives = 674/674 (100%)
Query: 1 MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWLSD 60
MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWLSD
Sbjct: 1 MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWLSD 60
Query: 61 SFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHSFI 120
SFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHSFI
Sbjct: 61 SFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHSFI 120
Query: 121 HAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFDSPAAQTCLNEYHLFFLLTGAFMGYSY 180
HAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFDSPAAQTCLNEYHLFFLLTGAFMGYSY
Sbjct: 121 HAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFDSPAAQTCLNEYHLFFLLTGAFMGYSY 180
Query: 181 SLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKA 240
SLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKA
Sbjct: 181 SLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKA 240
Query: 241 WISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHV 300
WISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHV
Sbjct: 241 WISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHV 300
Query: 301 FPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPH 360
FPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPH
Sbjct: 301 FPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPH 360
Query: 361 NWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQM 420
NWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQM
Sbjct: 361 NWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQM 420
Query: 421 PRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRR 480
PRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRR
Sbjct: 421 PRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRR 480
Query: 481 GPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVLIM 540
GPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVLIM
Sbjct: 481 GPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVLIM 540
Query: 541 YFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQE 600
YFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQE
Sbjct: 541 YFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQE 600
Query: 601 AVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASA 660
AVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASA
Sbjct: 601 AVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASA 660
Query: 661 EHQKRLQQFLEFKE 674
EHQKRLQQFLEFKE
Sbjct: 661 EHQKRLQQFLEFKE 674
>gi|6679074 nucleoporin like 2 [Homo sapiens]
Length = 423
Score = 34.3 bits (77), Expect = 0.39
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 27/155 (17%)
Query: 386 AAATNGRVSSSYPV---EPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPD 442
AA+T+ +S+S P ++ S +F++P +S P L + L+T
Sbjct: 274 AASTSSGISTSAPAFGFGKPEVTSAASFSFKSPAASSFGSPGFSGL------PASLATGP 327
Query: 443 VVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSPS 502
V +P FG + +AG +GSP G T+ S F N S S
Sbjct: 328 VRAPVAPAFGGG--SSVAG-------FGSP--------GSHSHTAFSKPSSDTFGNSSIS 370
Query: 503 TSISAEGKTMRQPSVIYSWIQNKR-EQIKNFLSKR 536
TS+SA + +V+++ E+++ F SK+
Sbjct: 371 TSLSASSSIIATDNVLFTPRDKLTVEELEQFQSKK 405
>gi|63054866 leucine rich repeat containing 16A [Homo sapiens]
Length = 1326
Score = 33.5 bits (75), Expect = 0.66
Identities = 38/141 (26%), Positives = 51/141 (36%), Gaps = 43/141 (30%)
Query: 387 AATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSP 446
A + R SSS P PK L Q+PK S RP +P +T+ S PD +
Sbjct: 1196 AGSRSRSSSSTPTSPKPL-------LQSPKPSLAARPVIPQKPRTA------SRPDDIPD 1242
Query: 447 FGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSPSTSIS 506
SP SP++ P L SD++ S+P PS
Sbjct: 1243 ------------------------SPSSPKVALLPPVLKKVPSDKERDGQSSPQPSP--- 1275
Query: 507 AEGKTMRQPSVIYSWIQNKRE 527
+T Q SW Q +E
Sbjct: 1276 ---RTFSQEVSRRSWGQQAQE 1293
>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
Length = 1302
Score = 33.1 bits (74), Expect = 0.86
Identities = 51/192 (26%), Positives = 71/192 (36%), Gaps = 20/192 (10%)
Query: 325 PIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNGMTQKLILYQ 384
P A + + SP R + + S PG P + S +L + LY+
Sbjct: 221 PFASLTATSQPIAAAARSPDRNLLLNTGSNPGTSPMFCSVASFGASSLSS-------LYE 273
Query: 385 EAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVV 444
+ A SS PV L SP A SQ+ PS PL S S +
Sbjct: 274 SSPAPTPSFWSSVPVMGPSLASPSRAA------SQLAVPST-PLSPHSAASGTAAGSQPS 326
Query: 445 SPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSPSTS 504
SP P+ + +G V+ SP P L + S+S Q+ + P P S
Sbjct: 327 SPRYRPYTVTHPWASSG---VSILSSSPSPPALASSPQAVPASSSRQRPSSTGPPLPPAS 383
Query: 505 ISAEGKTMRQPS 516
SA T R+PS
Sbjct: 384 PSA---TSRRPS 392
>gi|239752529 PREDICTED: similar to mucin [Homo sapiens]
Length = 594
Score = 32.3 bits (72), Expect = 1.5
Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 383 YQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPD 442
+ A AT G S S P+ + + + T+ TP + + T FSS L T
Sbjct: 207 FTSAIATTGITSHSTPIFTSLIATTDSTSHSTPSFTSSITSTETISHSTPSFSS-LITAT 265
Query: 443 VVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLI-------RRGPRLWTSASDQQMTE 495
+ TP +S+ I NT + +P L+ P + + + T
Sbjct: 266 KTTSHSTPSLTSL------ITTTNTSHSTPSLTSLVTSTETASHSTPSFTSLITTIEATS 319
Query: 496 FSNPSPSTSISAEGKTMRQ-PSVIY 519
S PS ++SI+ G T PS Y
Sbjct: 320 HSTPSLTSSITTTGTTSHSTPSFTY 344
>gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens]
Length = 1127
Score = 32.3 bits (72), Expect = 1.5
Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 44/229 (19%)
Query: 311 SDECLPKVLNSNP-------------------PPIIKYLALQDLMLLSQYSPSRRQEVF- 350
+D+ LP+ LN+ P P+++ LQDLM Q + + QE
Sbjct: 580 NDQLLPRKLNTEPKDVPKPVHQPVGSSSTLPKDPVLRKEKLQDLMTQIQGTCNFMQESVL 639
Query: 351 -----SLSQPGGHPHNWTAISRECLNLLNGMTQKLILYQEAAATNGRV---SSSYPVEPK 402
S + P P + T S N +Q L + AT+ V S++ V
Sbjct: 640 DFDKPSSAIPTSQPPSATPGSPVASKEQNLSSQSDFLQEPLQATSSPVTCSSNACLVTTD 699
Query: 403 KLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSS------KLSTPDVVSP----FGTPFG 452
+ +S ET F T S+ P ++PP + S +S K S SP
Sbjct: 700 QASSGSETEFMT---SETPEAAIPPGKQPSSLASPNPPMAKGSEQGFQSPPASSSSVTIN 756
Query: 453 SSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSP 501
++ M +F+VN P+ Q I+ P ++ +Q T S +P
Sbjct: 757 TAPFQAMQTVFNVNAPL-PPRKEQEIKESP--YSPGYNQSFTTASTQTP 802
>gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens]
Length = 793
Score = 32.3 bits (72), Expect = 1.5
Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 44/229 (19%)
Query: 311 SDECLPKVLNSNP-------------------PPIIKYLALQDLMLLSQYSPSRRQEVF- 350
+D+ LP+ LN+ P P+++ LQDLM Q + + QE
Sbjct: 247 NDQLLPRKLNTEPKDVPKPVHQPVGSSSTLPKDPVLRKEKLQDLMTQIQGTCNFMQESVL 306
Query: 351 -----SLSQPGGHPHNWTAISRECLNLLNGMTQKLILYQEAAATNGRV---SSSYPVEPK 402
S + P P + T S N +Q L + AT+ V S++ V
Sbjct: 307 DFDKPSSAIPTSQPPSATPGSPVASKEQNLSSQSDFLQEPLQATSSPVTCSSNACLVTTD 366
Query: 403 KLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSS------KLSTPDVVSP----FGTPFG 452
+ +S ET F T S+ P ++PP + S +S K S SP
Sbjct: 367 QASSGSETEFMT---SETPEAAIPPGKQPSSLASPNPPMAKGSEQGFQSPPASSSSVTIN 423
Query: 453 SSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSP 501
++ M +F+VN P+ Q I+ P ++ +Q T S +P
Sbjct: 424 TAPFQAMQTVFNVNAPL-PPRKEQEIKESP--YSPGYNQSFTTASTQTP 469
>gi|195963418 tubulin tyrosine ligase-like family, member 6 isoform
1 [Homo sapiens]
Length = 891
Score = 32.3 bits (72), Expect = 1.5
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 408 EETAFQTPK-SSQMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVN 466
EE + PK +S P S+P L +L SSKL +S +N G +
Sbjct: 624 EEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVHLT 683
Query: 467 TCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKR 526
+ +P+S + P+ + + +E+S P +S + K + P + ++
Sbjct: 684 SVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHL-----TQK 738
Query: 527 EQIKNFL 533
+ +K+FL
Sbjct: 739 KMLKSFL 745
>gi|195963416 tubulin tyrosine ligase-like family, member 6 isoform
2 [Homo sapiens]
Length = 584
Score = 32.3 bits (72), Expect = 1.5
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 408 EETAFQTPK-SSQMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVN 466
EE + PK +S P S+P L +L SSKL +S +N G +
Sbjct: 317 EEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVNVFTGTVHLT 376
Query: 467 TCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKR 526
+ +P+S + P+ + + +E+S P +S + K + P + ++
Sbjct: 377 SVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPHL-----TQK 431
Query: 527 EQIKNFL 533
+ +K+FL
Sbjct: 432 KMLKSFL 438
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 32.0 bits (71), Expect = 1.9
Identities = 50/230 (21%), Positives = 79/230 (34%), Gaps = 27/230 (11%)
Query: 302 PVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHN 361
P QPP S LP +S P +K + D +R+ + N
Sbjct: 1322 PPQPPPRSRSSHSLPSEASSQPQ--VKTNGISD---------GKRESPLKIDPFEDLSFN 1370
Query: 362 WTAISRECLNLLNG---MTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSS 418
A+S+ L++ L Q +AT V SS P P + Q S
Sbjct: 1371 LLAVSKAQLSVQTSPVPTPDPKRLIQLPSATQSNVLSSVSCMPTMPPIPARSQSQENMRS 1430
Query: 419 QMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLI 478
P P + L +T+ FS + + P G PF + A T + S + P I
Sbjct: 1431 S-PNPFITGLTRTNPFSDRTAAP------GNPFRAKSEESEA------TSWFSKEEPVTI 1477
Query: 479 RRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQ 528
P L ++ S S +G++ + S W+ + E+
Sbjct: 1478 SPFPSLQPLGHNKSRASSSLDGFKDSFDLQGQSTLKISNPKGWVTFEEEE 1527
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 32.0 bits (71), Expect = 1.9
Identities = 50/230 (21%), Positives = 79/230 (34%), Gaps = 27/230 (11%)
Query: 302 PVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHN 361
P QPP S LP +S P +K + D +R+ + N
Sbjct: 1236 PPQPPPRSRSSHSLPSEASSQPQ--VKTNGISD---------GKRESPLKIDPFEDLSFN 1284
Query: 362 WTAISRECLNLLNG---MTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSS 418
A+S+ L++ L Q +AT V SS P P + Q S
Sbjct: 1285 LLAVSKAQLSVQTSPVPTPDPKRLIQLPSATQSNVLSSVSCMPTMPPIPARSQSQENMRS 1344
Query: 419 QMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLI 478
P P + L +T+ FS + + P G PF + A T + S + P I
Sbjct: 1345 S-PNPFITGLTRTNPFSDRTAAP------GNPFRAKSEESEA------TSWFSKEEPVTI 1391
Query: 479 RRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQ 528
P L ++ S S +G++ + S W+ + E+
Sbjct: 1392 SPFPSLQPLGHNKSRASSSLDGFKDSFDLQGQSTLKISNPKGWVTFEEEE 1441
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 31.6 bits (70), Expect = 2.5
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 316 PKVLNSNPPPIIKYLALQDLM--LLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLL 373
P++ + PP I ALQDL+ L S SP ++Q+V ++ + +P A ++
Sbjct: 2013 PRMPSVQPPRSISPSALQDLLRTLKSPSSPQQQQQVLNILK--SNPQLMAAFIKQ----- 2065
Query: 374 NGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQ--MPRPSVPP 427
T K + Q + S ++P+ ++ + Q + Q +PRP VPP
Sbjct: 2066 --RTAKYVANQPGMQPQPGLQSQPGMQPQP-GMHQQPSLQNLNAMQAGVPRPGVPP 2118
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 31.6 bits (70), Expect = 2.5
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 316 PKVLNSNPPPIIKYLALQDLM--LLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLL 373
P++ + PP I ALQDL+ L S SP ++Q+V ++ + +P A ++
Sbjct: 2051 PRMPSVQPPRSISPSALQDLLRTLKSPSSPQQQQQVLNILK--SNPQLMAAFIKQ----- 2103
Query: 374 NGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQ--MPRPSVPP 427
T K + Q + S ++P+ ++ + Q + Q +PRP VPP
Sbjct: 2104 --RTAKYVANQPGMQPQPGLQSQPGMQPQP-GMHQQPSLQNLNAMQAGVPRPGVPP 2156
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 31.6 bits (70), Expect = 2.5
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 390 NGRVSSSYPVEPKKLNSPE-ETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSPF 447
+GR SS P +PKK +SP+ + + +P + S +S + K S P SPF
Sbjct: 1084 SGRHSSPAPAQPKKESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPATRSPF 1142
>gi|62460633 RNA-binding motif protein 16 [Homo sapiens]
Length = 1271
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 420 MPRPSVPPLVKTSLFSSKLS-TPDVVSPFGTPFGSSVM 456
+P P++PP+V TSL LS TP+ V G FGS V+
Sbjct: 702 VPPPTIPPVVPTSLVQPSLSMTPETVKDVG--FGSLVI 737
>gi|239758058 PREDICTED: similar to mucin, partial [Homo sapiens]
Length = 967
Score = 31.2 bits (69), Expect = 3.3
Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 1/128 (0%)
Query: 383 YQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPD 442
Y + AT S S P P + + E TP + + F+S ++T +
Sbjct: 704 YTSSIATTETPSHSTPSFPFSITTTETIPHSTPSLNSAITTTETMSHSIPGFASSITTSE 763
Query: 443 VVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSA-SDQQMTEFSNPSP 501
SPF F S + + S S + P +TS + ++T S PS
Sbjct: 764 TTSPFPPRFTSLITTTKTTSHSPPSFTASLTSTEATSHSPLSFTSVIASTKITSQSTPSL 823
Query: 502 STSISAEG 509
++ I+ G
Sbjct: 824 TSLITTTG 831
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 31.2 bits (69), Expect = 3.3
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 382 LYQEAAATNGRVSSSYPVEPKKLNSPE--ETAFQTPKSSQMPRPSVPPLVKTSLFSSKLS 439
L +E+ A G +S+ P L + + E + P SS ++ P T+ S
Sbjct: 2436 LTEESTAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGTTLSPARSTTSGLVGES 2495
Query: 440 TPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNP 499
TP +SP T + T GSP +P L + +TS T
Sbjct: 2496 TPSRLSPSST--------------ETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPAT 2541
Query: 500 SPSTSISAEGKT 511
+ S+ +S E T
Sbjct: 2542 TTSSGVSEESST 2553
Score = 31.2 bits (69), Expect = 3.3
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 382 LYQEAAATNGRVSSSYPVEPKKLNSPE--ETAFQTPKSSQMPRPSVPPLVKTSLFSSKLS 439
L +E+ A G +S+ P L + + E + P SS ++ P T+ S
Sbjct: 2910 LTEESTAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGTTLSPARSTTSGLVGES 2969
Query: 440 TPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNP 499
TP +SP T + T GSP +P L + +TS T
Sbjct: 2970 TPSRLSPSST--------------ETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPAT 3015
Query: 500 SPSTSISAEGKT 511
+ S+ +S E T
Sbjct: 3016 TTSSGVSEESST 3027
Score = 30.8 bits (68), Expect = 4.3
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 382 LYQEAAATNGRVSSSYPVEPKKLNSPE--ETAFQTPKSSQMPRPSVPPLVKTSLFSSKLS 439
L +E+ A G +S+ P L + + E + P SS + P T+ S
Sbjct: 1353 LTEESTAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGTKLSPARSTTSGLVGES 1412
Query: 440 TPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNP 499
TP +SP T + T GSP +P L + +TS T
Sbjct: 1413 TPSRLSPSST--------------ETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPAT 1458
Query: 500 SPSTSISAEGKT 511
+ S+ +S E T
Sbjct: 1459 TTSSGVSEESST 1470
Score = 30.8 bits (68), Expect = 4.3
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 382 LYQEAAATNGRVSSSYPVEPKKLNSPE--ETAFQTPKSSQMPRPSVPPLVKTSLFSSKLS 439
L +E+ A G +S+ P L + + E + P SS + P T+ S
Sbjct: 3993 LTEESTAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGTKLSPARSTTSGLVGES 4052
Query: 440 TPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNP 499
TP +SP T + T GSP +P L + +TS T
Sbjct: 4053 TPSRLSPSST--------------ETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPAT 4098
Query: 500 SPSTSISAEGKT 511
+ S+ +S E T
Sbjct: 4099 TTSSGVSEESST 4110
Score = 30.4 bits (67), Expect = 5.6
Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 16/144 (11%)
Query: 386 AAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVS 445
A+ T+ VS + S TAF P S+ MP S T+ SS ST +S
Sbjct: 4348 ASTTSSGVSEESTTSHSRPGSMHTTAF--PSSTTMPGVSQE---STASHSSPGSTDTTLS 4402
Query: 446 PFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEF--SNPSPST 503
P GS+ + + + T + SP S + S + T S SP T
Sbjct: 4403 P-----GSTTASSLGP--ESTTFHSSPGSTETTLLPDNTTASGLLEASTPVHSSTGSPHT 4455
Query: 504 SISAEGKTMRQ--PSVIYSWIQNK 525
++S G T RQ + SW +K
Sbjct: 4456 TLSPAGSTTRQGESTTFQSWPNSK 4479
Score = 30.0 bits (66), Expect = 7.3
Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 16/144 (11%)
Query: 386 AAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVS 445
A+ T+ VS + S TAF P S+ MP S T+ SS ST +S
Sbjct: 1708 ASTTSSGVSEESTTSHSRPGSTHTTAF--PGSTTMPGVSQE---STASHSSPGSTDTTLS 1762
Query: 446 PFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEF--SNPSPST 503
P GS+ + + + T + SP S + S + T S SP T
Sbjct: 1763 P-----GSTTASSLGP--ESTTFHSSPGSTETTLLPDNTTASGLLEASTPVHSSTGSPHT 1815
Query: 504 SISAEGKTMRQ--PSVIYSWIQNK 525
++S G T RQ + SW +K
Sbjct: 1816 TLSPAGSTTRQGESTTFQSWPSSK 1839
>gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]
Length = 1486
Score = 31.2 bits (69), Expect = 3.3
Identities = 45/269 (16%), Positives = 95/269 (35%), Gaps = 20/269 (7%)
Query: 383 YQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPD 442
+ + T S S P + + T+ ++P + + + T F+S ++T +
Sbjct: 419 FTSSITTTETPSHSTPRFTSSFTNTKTTSHRSPSFTSLITTTETTSHSTPSFTSSITTTE 478
Query: 443 VVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSA-SDQQMTEFSNPSP 501
S F SS+ + + S + + +TS+ + + T S PS
Sbjct: 479 TTSHSARSFTSSITTTETTSHNTRSFTSSITTTETNSHSTTSFTSSITTTETTSHSTPSF 538
Query: 502 STSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMH 561
S+SI+ + + SW+ + + H + + + +
Sbjct: 539 SSSITTTETPLHSTPGLTSWVTTTKT----------------TSHITPGLTSSITTTETT 582
Query: 562 IWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQEAVDKYFKLPHASSKPPRISGS 621
+ G + + + T + I +T+ T A+ +F + P ++ S
Sbjct: 583 SHSTPGFTSSITTTETTSE-STPSLSSSTIYSTVSTSTTAITSHFTTSETAVTPTPVTPS 641
Query: 622 LVDTSYKT--LRFAFRASLKTAIYRITTT 648
+ T T LR +S+ T+ TTT
Sbjct: 642 SLSTDIPTTSLRTLTPSSVGTSTSLTTTT 670
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 30.8 bits (68), Expect = 4.3
Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 22/129 (17%)
Query: 304 QPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWT 363
Q P ++ PK +S PPP + + E ++S PG P +
Sbjct: 1242 QKPTPSAREDPAPKKSSSEPPP--------------RKPVEEKSEEGNVSAPG--PESKQ 1285
Query: 364 AISRECLNLLNGMTQKLILYQEAAATNG----RVSSSYPVEPKKLNSP--EETAFQTPKS 417
A + ++Q ++ T G V + P EPKK P E Q+ +
Sbjct: 1286 ATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPESGPEQSKQK 1345
Query: 418 SQMPRPSVP 426
PRPS+P
Sbjct: 1346 KVAPRPSIP 1354
>gi|4506537 receptor-interacting serine-threonine kinase 2 [Homo
sapiens]
Length = 540
Score = 30.8 bits (68), Expect = 4.3
Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 23/153 (15%)
Query: 409 ETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTC 468
E Q K+ S L L+ P P GSS ++ +G + +
Sbjct: 304 EAVIQLKKTKLQSVSSAIHLCDKKKMELSLNIPVNHGPQEESCGSSQLHENSGSPETSRS 363
Query: 469 YGSPQSPQLIRR--------------GPRLWTSA-SDQQMTEFSN--PSPSTS-----IS 506
+PQ + R G W S S Q F + +P +S +S
Sbjct: 364 LPAPQDNDFLSRKAQDCYFMKLHHCPGNHSWDSTISGSQRAAFCDHKTTPCSSAIINPLS 423
Query: 507 AEGKTMR-QPSVIYSWIQNKREQIKNFLSKRVL 538
G + R QP + WIQ+KRE I N +++ L
Sbjct: 424 TAGNSERLQPGIAQQWIQSKREDIVNQMTEACL 456
>gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens]
Length = 729
Score = 30.8 bits (68), Expect = 4.3
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 9/150 (6%)
Query: 390 NGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSPFGT 449
N S P E ++L P E + P+ S + P +PP +S F +K S D +S
Sbjct: 397 NDPKSMKLPQEQRQLPYPSEASTTFPE-SHLRTPQMPPTTPSSSFFTKKS-EDTISKMND 454
Query: 450 PFGSSVM---NRMAGIF--DVNTCYGSPQSPQLIRRGP--RLWTSASDQQMTEFSNPSPS 502
++ + G F + P +PQ+ P T+ + TE S
Sbjct: 455 FMRMQILKEGSHFPGPFMTSIGPAESHPHTPQMPPSTPSSSFLTTLKPRLKTEPEEVSIE 514
Query: 503 TSISAEGKTMRQPSVIYSWIQNKREQIKNF 532
S ++ K + + S++ +EQ K F
Sbjct: 515 DSAQSDLKEVMVLNATESFVYEPKEQKKMF 544
>gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]
Length = 861
Score = 30.8 bits (68), Expect = 4.3
Identities = 64/250 (25%), Positives = 91/250 (36%), Gaps = 25/250 (10%)
Query: 386 AAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVS 445
A T+ VS + S TAF P S+ MP S T+ SS T +S
Sbjct: 509 ARMTSSGVSEESTTSHSRPGSTHTTAF--PGSTTMPGLSQE---STASHSSPGPTDTTLS 563
Query: 446 PFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEF--SNPSPST 503
P GS+ + + + T + SP S + S + T S SP T
Sbjct: 564 P-----GSTTASSLGP--EYTTFHSSPGSTETTLLPDNTTASGLLEASTPVHSSTRSPHT 616
Query: 504 SISAEGKTMRQ--PSVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMH 561
++S G T RQ + +SW +K + + + + H S S H
Sbjct: 617 TLSPAGSTTRQGESTTFHSWPSSKDTRPAPPTTTSAFVEPSTTSHGSPS-----SIPTTH 671
Query: 562 IWALEGLSHLVAASFT-EDRFGVVQTT-LPAILNTLLTLQEAVDKYFKLPHASSKPPRIS 619
I A S LV S T G QT P T +E+ + H S P +
Sbjct: 672 ISARSTTSGLVEESTTYHSSPGSTQTMHFPESDTTSGRGEESTTSHSSTTHTISSAPSTT 731
Query: 620 GSLVD--TSY 627
+LV+ TSY
Sbjct: 732 SALVEEPTSY 741
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 30.8 bits (68), Expect = 4.3
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 382 LYQEAAATNGRVSSSYPVEPKKLNSPE--ETAFQTPKSSQMPRPSVPPLVKTSLFSSKLS 439
L +E+ A G +S+ P L + + E + P SS + P T+ S
Sbjct: 840 LTEESTAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGTKLSPARSTTSGLVGES 899
Query: 440 TPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNP 499
TP +SP T + T GSP +P L + +TS T
Sbjct: 900 TPSRLSPSST--------------ETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPAT 945
Query: 500 SPSTSISAEGKT 511
+ S+ +S E T
Sbjct: 946 TTSSGVSEESST 957
Score = 30.0 bits (66), Expect = 7.3
Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 16/144 (11%)
Query: 386 AAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVS 445
A+ T+ VS + S TAF P S+ MP S T+ SS ST +S
Sbjct: 1195 ASTTSSGVSEESTTSHSRPGSTHTTAF--PGSTTMPGVSQE---STASHSSPGSTDTTLS 1249
Query: 446 PFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEF--SNPSPST 503
P GS+ + + + T + SP S + S + T S SP T
Sbjct: 1250 P-----GSTTASSLGP--ESTTFHSSPGSTETTLLPDNTTASGLLEASTPVHSSTGSPHT 1302
Query: 504 SISAEGKTMRQ--PSVIYSWIQNK 525
++S G T RQ + SW +K
Sbjct: 1303 TLSPAGSTTRQGESTTFQSWPSSK 1326
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 30.8 bits (68), Expect = 4.3
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 385 EAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVV 444
EA+ G + YPV P L P P + RP PP +S + P+
Sbjct: 69 EASRGGGGAGAFYPVPPPPLPPPPPQCRPFPGTDAGERPRPPPPGPGPPWSPR--WPEAP 126
Query: 445 SPFGTPFGSSVMNRMAGIFDVNTCYGSPQS-----PQLIRRGPRL 484
P G + + R+ + +G+P+ PQ GP L
Sbjct: 127 PPPADVLGDAALQRLRDRQWLEAVFGTPRRAGCPVPQRTHAGPSL 171
>gi|4503493 early growth response 1 [Homo sapiens]
Length = 543
Score = 30.4 bits (67), Expect = 5.6
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 377 TQKLILYQEAAATN--GRVSSSYPVEPK-KLNSPEETAFQTPKSSQMPRP----SVPPLV 429
T L Y AT+ V++SYP SP T+F +P SS P P P V
Sbjct: 436 TSSLSSYPSPVATSYPSPVTTSYPSPATTSYPSPVPTSFSSPGSSTYPSPVHSGFPSPSV 495
Query: 430 KTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQL 477
T+ S + P VS F + ++ + G+ D+ + SP++ ++
Sbjct: 496 ATTYSSVPPAFPAQVSSFPSSAVTNSFSASTGLSDMTATF-SPRTIEI 542
>gi|144226234 metastasis suppressor 1 [Homo sapiens]
Length = 755
Score = 30.4 bits (67), Expect = 5.6
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 390 NGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSPFGT 449
+G+ S + P+ K + PEE P+S + PP S S P +SP T
Sbjct: 666 SGQASVNPPLPGPKPSIPEEHRQAIPESEAEDQEREPPSATVSPGQIPESDPADLSPRDT 725
Query: 450 PFGSSVMN 457
P G ++N
Sbjct: 726 PQGEDMLN 733
>gi|21536376 ATP-binding cassette, sub-family A member 1 [Homo
sapiens]
Length = 2261
Score = 30.0 bits (66), Expect = 7.3
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 29 IVWSVLFLPICTTVFIIFSRIDLFHPIQWLSDSFSDLY--SSYV---IFYFLLLSVVIII 83
+++++ F+P VF+I R+ +Q++S +Y S++V Y + ++VIII
Sbjct: 1661 VIFAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIII 1720
Query: 84 ISIFNVEFYAVVPSIPCSRLALI--GKIIHPQQLMHSFI 120
F + Y ++P L L+ G I P SF+
Sbjct: 1721 FICFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFV 1759
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 30.0 bits (66), Expect = 7.3
Identities = 21/67 (31%), Positives = 26/67 (38%)
Query: 384 QEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDV 443
+ AA G S EPKK +P A Q KS P P + SSK +
Sbjct: 131 ESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSEAAPSSKETPAAT 190
Query: 444 VSPFGTP 450
+P TP
Sbjct: 191 EAPSSTP 197
>gi|38569480 megakaryoblastic leukemia 2 protein [Homo sapiens]
Length = 1049
Score = 30.0 bits (66), Expect = 7.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 385 EAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKT 431
+ A+ + S++ P EPK SP TP P+VP +KT
Sbjct: 199 QPASQESQGSAASPSEPKVSESPSPVTTNTPAQFASVSPTVPEFLKT 245
>gi|116174780 SEC24 related gene family, member A [Homo sapiens]
Length = 1093
Score = 30.0 bits (66), Expect = 7.3
Identities = 54/236 (22%), Positives = 85/236 (36%), Gaps = 27/236 (11%)
Query: 304 QPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWT 363
+PP A S+ P L+S P P + A Q+ S S E +L P +N+
Sbjct: 88 RPPVA--SNPVTPS-LHSGPAPRMPLPASQNPATTPMPSSSFLPEA-NLPPPLNWQYNYP 143
Query: 364 AISRECLNLLNGMTQKLILYQEAAATNGR-VSSSYPV-----------EPKKLNSPEETA 411
+ + + + +Q + + TN + VSS YP P +N P T
Sbjct: 144 STASQTNHCPRASSQPTVSGNTSLTTNHQYVSSGYPSLQNSFIKSGPSVPPLVNPPLPTT 203
Query: 412 FQTPKSSQMPRPSVPPLVK--TSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCY 469
FQ P PP V+ T L SS P + N G V++ Y
Sbjct: 204 FQPGAPHGPPPAGGPPPVRALTPLTSSYRDVPQPLFNSAVNQEGITSNTNNGSMVVHSSY 263
Query: 470 ------GSPQSPQLIRRGPRLWTSASDQQMT---EFSNPSPSTSISAEGKTMRQPS 516
G +PQL + P++ S + + N +P + ++ PS
Sbjct: 264 DEIEGGGLLATPQLTNKNPKMSRSVGYSYPSLPPGYQNTTPPGATGVPPSSLNYPS 319
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,849,808
Number of Sequences: 37866
Number of extensions: 1182784
Number of successful extensions: 4523
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4497
Number of HSP's gapped (non-prelim): 64
length of query: 674
length of database: 18,247,518
effective HSP length: 109
effective length of query: 565
effective length of database: 14,120,124
effective search space: 7977870060
effective search space used: 7977870060
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.