Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 212286181
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|212286181 parvin, gamma [Homo sapiens]
(331 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|212286181 parvin, gamma [Homo sapiens] 653 0.0
gi|212286179 parvin, gamma [Homo sapiens] 653 0.0
gi|11545879 parvin, gamma [Homo sapiens] 653 0.0
gi|51477696 parvin, beta isoform a [Homo sapiens] 261 5e-70
gi|20127528 parvin, beta isoform b [Homo sapiens] 261 5e-70
gi|8922673 parvin, alpha [Homo sapiens] 253 2e-67
gi|12025678 actinin, alpha 4 [Homo sapiens] 47 2e-05
gi|194097352 actinin, alpha 1 isoform c [Homo sapiens] 45 1e-04
gi|194097350 actinin, alpha 1 isoform a [Homo sapiens] 45 1e-04
gi|4501891 actinin, alpha 1 isoform b [Homo sapiens] 45 1e-04
gi|83816971 DIX domain containing 1 isoform a [Homo sapiens] 44 3e-04
gi|126116596 asp (abnormal spindle)-like, microcephaly associate... 43 4e-04
gi|188595687 gamma filamin isoform b [Homo sapiens] 38 0.011
gi|116805322 gamma filamin isoform a [Homo sapiens] 38 0.011
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... 38 0.014
gi|160420317 filamin A, alpha isoform 2 [Homo sapiens] 37 0.024
gi|116063573 filamin A, alpha isoform 1 [Homo sapiens] 37 0.024
gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo ... 37 0.024
gi|105990514 filamin B, beta (actin binding protein 278) [Homo s... 37 0.032
gi|9910266 kinesin family member 15 [Homo sapiens] 37 0.032
gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens] 35 0.071
gi|221316624 dystonin isoform 4 [Homo sapiens] 35 0.071
gi|221316622 dystonin isoform 3 [Homo sapiens] 35 0.071
gi|221316618 dystonin isoform 2 [Homo sapiens] 35 0.071
gi|112382252 spectrin, beta, non-erythrocytic 1 isoform 2 [Homo ... 35 0.071
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 35 0.071
gi|120953251 neuron navigator 3 [Homo sapiens] 35 0.071
gi|33188445 microfilament and actin filament cross-linker protei... 35 0.093
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 34 0.21
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens] 34 0.21
>gi|212286181 parvin, gamma [Homo sapiens]
Length = 331
Score = 653 bits (1685), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MEPEFLYDLLQLPKGVEPPAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLP 60
MEPEFLYDLLQLPKGVEPPAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLP
Sbjct: 1 MEPEFLYDLLQLPKGVEPPAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLP 60
Query: 61 EHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLE 120
EHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLE
Sbjct: 61 EHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLE 120
Query: 121 EWQAKWSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLV 180
EWQAKWSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLV
Sbjct: 121 EWQAKWSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLV 180
Query: 181 EQLTEYSTDKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFAD 240
EQLTEYSTDKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFAD
Sbjct: 181 EQLTEYSTDKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFAD 240
Query: 241 GVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNK 300
GVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNK
Sbjct: 241 GVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNK 300
Query: 301 DAKSTLRVLYGLFCKHTQKAHRDRTPHGAPN 331
DAKSTLRVLYGLFCKHTQKAHRDRTPHGAPN
Sbjct: 301 DAKSTLRVLYGLFCKHTQKAHRDRTPHGAPN 331
>gi|212286179 parvin, gamma [Homo sapiens]
Length = 331
Score = 653 bits (1685), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MEPEFLYDLLQLPKGVEPPAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLP 60
MEPEFLYDLLQLPKGVEPPAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLP
Sbjct: 1 MEPEFLYDLLQLPKGVEPPAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLP 60
Query: 61 EHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLE 120
EHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLE
Sbjct: 61 EHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLE 120
Query: 121 EWQAKWSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLV 180
EWQAKWSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLV
Sbjct: 121 EWQAKWSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLV 180
Query: 181 EQLTEYSTDKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFAD 240
EQLTEYSTDKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFAD
Sbjct: 181 EQLTEYSTDKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFAD 240
Query: 241 GVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNK 300
GVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNK
Sbjct: 241 GVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNK 300
Query: 301 DAKSTLRVLYGLFCKHTQKAHRDRTPHGAPN 331
DAKSTLRVLYGLFCKHTQKAHRDRTPHGAPN
Sbjct: 301 DAKSTLRVLYGLFCKHTQKAHRDRTPHGAPN 331
>gi|11545879 parvin, gamma [Homo sapiens]
Length = 331
Score = 653 bits (1685), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MEPEFLYDLLQLPKGVEPPAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLP 60
MEPEFLYDLLQLPKGVEPPAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLP
Sbjct: 1 MEPEFLYDLLQLPKGVEPPAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLP 60
Query: 61 EHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLE 120
EHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLE
Sbjct: 61 EHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLE 120
Query: 121 EWQAKWSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLV 180
EWQAKWSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLV
Sbjct: 121 EWQAKWSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLV 180
Query: 181 EQLTEYSTDKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFAD 240
EQLTEYSTDKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFAD
Sbjct: 181 EQLTEYSTDKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFAD 240
Query: 241 GVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNK 300
GVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNK
Sbjct: 241 GVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNK 300
Query: 301 DAKSTLRVLYGLFCKHTQKAHRDRTPHGAPN 331
DAKSTLRVLYGLFCKHTQKAHRDRTPHGAPN
Sbjct: 301 DAKSTLRVLYGLFCKHTQKAHRDRTPHGAPN 331
>gi|51477696 parvin, beta isoform a [Homo sapiens]
Length = 397
Score = 261 bits (668), Expect = 5e-70
Identities = 136/301 (45%), Positives = 198/301 (65%), Gaps = 5/301 (1%)
Query: 19 PAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLPEHIVVRSLEEDMFDGLIL 78
P + +L + ++ + PTS++DPKF+EL KVL++WIN L+ E I+V+ LEED++DG +L
Sbjct: 95 PEDTQLEENEERTMIDPTSKEDPKFKELVKVLLDWINDVLVEERIIVKQLEEDLYDGQVL 154
Query: 79 HHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLEEWQAKWSVESIFNKDLLS 138
L ++LA KL ++ + QK KL VLEAV+ L+ W +WSV+SI K+L++
Sbjct: 155 QKLLEKLAGCKLNVAEVTQSEIGQKQKLQTVLEAVHDLLRPRGWALRWSVDSIHGKNLVA 214
Query: 139 TLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLVEQL---TEYSTDKDEPPK 195
LHLLV+LA F+ + LP +V V+V+ + + L S + E+L TE + E +
Sbjct: 215 ILHLLVSLAMHFRAPIRLPEHVTVQVVVVRKREGLLHSSHISEELTTTTEMMMGRFE--R 272
Query: 196 DVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFF 255
D FD LF AP+K++ VK++++ FVN+ L++L L V L+TQFADGV L+LL+G LE +F
Sbjct: 273 DAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEDYF 332
Query: 256 LHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLFCK 315
+ L FYLTP S + +HNV+ A EL+ D GL PED+VN D KSTLRVLY LF K
Sbjct: 333 VPLHHFYLTPESFDQKVHNVSFAFELMLDGGLKKPKARPEDVVNLDLKSTLRVLYNLFTK 392
Query: 316 H 316
+
Sbjct: 393 Y 393
>gi|20127528 parvin, beta isoform b [Homo sapiens]
Length = 364
Score = 261 bits (668), Expect = 5e-70
Identities = 136/301 (45%), Positives = 198/301 (65%), Gaps = 5/301 (1%)
Query: 19 PAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLPEHIVVRSLEEDMFDGLIL 78
P + +L + ++ + PTS++DPKF+EL KVL++WIN L+ E I+V+ LEED++DG +L
Sbjct: 62 PEDTQLEENEERTMIDPTSKEDPKFKELVKVLLDWINDVLVEERIIVKQLEEDLYDGQVL 121
Query: 79 HHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLEEWQAKWSVESIFNKDLLS 138
L ++LA KL ++ + QK KL VLEAV+ L+ W +WSV+SI K+L++
Sbjct: 122 QKLLEKLAGCKLNVAEVTQSEIGQKQKLQTVLEAVHDLLRPRGWALRWSVDSIHGKNLVA 181
Query: 139 TLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLVEQL---TEYSTDKDEPPK 195
LHLLV+LA F+ + LP +V V+V+ + + L S + E+L TE + E +
Sbjct: 182 ILHLLVSLAMHFRAPIRLPEHVTVQVVVVRKREGLLHSSHISEELTTTTEMMMGRFE--R 239
Query: 196 DVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFF 255
D FD LF AP+K++ VK++++ FVN+ L++L L V L+TQFADGV L+LL+G LE +F
Sbjct: 240 DAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEDYF 299
Query: 256 LHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLFCK 315
+ L FYLTP S + +HNV+ A EL+ D GL PED+VN D KSTLRVLY LF K
Sbjct: 300 VPLHHFYLTPESFDQKVHNVSFAFELMLDGGLKKPKARPEDVVNLDLKSTLRVLYNLFTK 359
Query: 316 H 316
+
Sbjct: 360 Y 360
>gi|8922673 parvin, alpha [Homo sapiens]
Length = 372
Score = 253 bits (645), Expect = 2e-67
Identities = 131/301 (43%), Positives = 199/301 (66%), Gaps = 5/301 (1%)
Query: 19 PAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLPEHIVVRSLEEDMFDGLIL 78
P + L + + + P SR DPK +EL KVL++WIN L+ E I+V+ L ED++DG +L
Sbjct: 70 PEDTMLEENEVRTMVDPNSRSDPKLQELMKVLIDWINDVLVGERIIVKDLAEDLYDGQVL 129
Query: 79 HHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLEEWQAKWSVESIFNKDLLS 138
LF++L + KL ++ + +QK KL VLE +N +L+L KW+V+S+ K L++
Sbjct: 130 QKLFEKLESEKLNVAEVTQSEIAQKQKLQTVLEKINETLKLPPRSIKWNVDSVHAKSLVA 189
Query: 139 TLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLVEQL---TEYSTDKDEPPK 195
LHLLVAL++ F+ + LP +V ++V+ ++ + L+S ++ E++ TE + + E +
Sbjct: 190 ILHLLVALSQYFRAPIRLPDHVSIQVVVVQKREGILQSRQIQEEITGNTEALSGRHE--R 247
Query: 196 DVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFF 255
D FD LF AP+K+N VK+ ++ FVN+ L++L L V L+TQFADGV L+LL+G LEG+F
Sbjct: 248 DAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYF 307
Query: 256 LHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLFCK 315
+ L F+LTP+S + + NV+ A EL++D GL PEDIVN D KSTLRVLY LF K
Sbjct: 308 VPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTK 367
Query: 316 H 316
+
Sbjct: 368 Y 368
>gi|12025678 actinin, alpha 4 [Homo sapiens]
Length = 911
Score = 47.4 bits (111), Expect = 2e-05
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 195 KDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGF 254
+D +D L P ++ + N L + G ++N+D F DG+ L+LL+ + G
Sbjct: 35 EDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGE 94
Query: 255 FLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLFC 314
L E ++NV AL+ + +G+ + E+IV+ +AK TL +++ +
Sbjct: 95 RLPKPE---RGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTIIL 151
Query: 315 K 315
+
Sbjct: 152 R 152
Score = 31.2 bits (69), Expect = 1.3
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 33/208 (15%)
Query: 40 DPKFEELQ-KVLMEWINATLLPEHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALT 98
DP +E+ Q K W N+ L + +++ED DGL L L + ++ +L +
Sbjct: 45 DPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPE---R 101
Query: 99 ATSQKHKLTVVLEAVNRSLQLEEWQAKWSVESIFNKDLLSTLHLLVALAKRFQ-PDLSLP 157
+ HK+ V +A++ E I + + TL ++ + RF D+S+
Sbjct: 102 GKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQDISVE 161
Query: 158 -------------------TNVQVEVITIESTKSGLKSEKLVE----QLTEYSTDKDEPP 194
NV V+ I S K GL L+ +L EY + + P
Sbjct: 162 ETSAKEGLLLWCQRKTAPYKNVNVQNFHI-SWKDGLAFNALIHRHRPELIEYDKLRKDDP 220
Query: 195 KDVFDELFKLAPEKVNAVK----EAIVN 218
+ F++A + ++ K E IVN
Sbjct: 221 VTNLNNAFEVAEKYLDIPKMLDAEDIVN 248
>gi|194097352 actinin, alpha 1 isoform c [Homo sapiens]
Length = 887
Score = 44.7 bits (104), Expect = 1e-04
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 194 PKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEG 253
P++ +D L P ++ + N L + G ++N++ F DG+ L+LL+ + G
Sbjct: 15 PEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISG 74
Query: 254 FFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLF 313
L E + NV AL+ + +G+ + E+IV+ + K TL +++ +
Sbjct: 75 ERLAKPE---RGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTII 131
Query: 314 CK 315
+
Sbjct: 132 LR 133
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 40 DPKFEELQ-KVLMEWINATLLPEHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALT 98
DP +E+ Q K W N+ L + ++EED DGL L L + ++ +L +
Sbjct: 26 DPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPE---R 82
Query: 99 ATSQKHKLTVVLEAVNRSLQLEEWQAKWSVESIFNKDLLSTLHLLVALAKRF 150
+ HK++ V +A++ E I + ++ TL ++ + RF
Sbjct: 83 GKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRF 134
>gi|194097350 actinin, alpha 1 isoform a [Homo sapiens]
Length = 914
Score = 44.7 bits (104), Expect = 1e-04
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 194 PKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEG 253
P++ +D L P ++ + N L + G ++N++ F DG+ L+LL+ + G
Sbjct: 15 PEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISG 74
Query: 254 FFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLF 313
L E + NV AL+ + +G+ + E+IV+ + K TL +++ +
Sbjct: 75 ERLAKPE---RGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTII 131
Query: 314 CK 315
+
Sbjct: 132 LR 133
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 40 DPKFEELQ-KVLMEWINATLLPEHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALT 98
DP +E+ Q K W N+ L + ++EED DGL L L + ++ +L +
Sbjct: 26 DPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPE---R 82
Query: 99 ATSQKHKLTVVLEAVNRSLQLEEWQAKWSVESIFNKDLLSTLHLLVALAKRF 150
+ HK++ V +A++ E I + ++ TL ++ + RF
Sbjct: 83 GKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRF 134
>gi|4501891 actinin, alpha 1 isoform b [Homo sapiens]
Length = 892
Score = 44.7 bits (104), Expect = 1e-04
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 194 PKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEG 253
P++ +D L P ++ + N L + G ++N++ F DG+ L+LL+ + G
Sbjct: 15 PEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISG 74
Query: 254 FFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLF 313
L E + NV AL+ + +G+ + E+IV+ + K TL +++ +
Sbjct: 75 ERLAKPE---RGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTII 131
Query: 314 CK 315
+
Sbjct: 132 LR 133
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 40 DPKFEELQ-KVLMEWINATLLPEHIVVRSLEEDMFDGLILHHLFQRLAALKLEAEDIALT 98
DP +E+ Q K W N+ L + ++EED DGL L L + ++ +L +
Sbjct: 26 DPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPE---R 82
Query: 99 ATSQKHKLTVVLEAVNRSLQLEEWQAKWSVESIFNKDLLSTLHLLVALAKRF 150
+ HK++ V +A++ E I + ++ TL ++ + RF
Sbjct: 83 GKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRF 134
>gi|83816971 DIX domain containing 1 isoform a [Homo sapiens]
Length = 683
Score = 43.5 bits (101), Expect = 3e-04
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 44 EELQKVLMEWINATLLPEHIV--VRSLEEDMFDGLILHHLFQRLAALKLEAEDIAL-TAT 100
E+ + + W+NA L V V+ L +D+ DG+IL +L + +A KL ++
Sbjct: 20 EQQLQAYVAWVNAQLKKRPAVKPVQDLRQDLRDGVILAYLIEIVAGEKLSGVQLSPGNQQ 79
Query: 101 SQKHKLTVVLEAV-NRSLQLEEWQAKWSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTN 159
K+ + VL+ V ++ +++ + AK I + +L S + L++ALA F+P S N
Sbjct: 80 EMKNNVEKVLQFVASKKIRMHQTSAK----DIVDGNLKSIMRLVLALAAHFKPGSSRTVN 135
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 214 EAIVNFVNQKLDRLGL--SVQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTPNSPAEM 271
+A V +VN +L + VQ+L DGVIL LI + G L L+P + EM
Sbjct: 24 QAYVAWVNAQLKKRPAVKPVQDLRQDLRDGVILAYLIEIVAGE--KLSGVQLSPGNQQEM 81
Query: 272 LHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGL 312
+NV L+ + + + S +DIV+ + KS +R++ L
Sbjct: 82 KNNVEKVLQFVASKKIRMHQTSAKDIVDGNLKSIMRLVLAL 122
>gi|126116596 asp (abnormal spindle)-like, microcephaly associated
[Homo sapiens]
Length = 3477
Score = 42.7 bits (99), Expect = 4e-04
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 27/165 (16%)
Query: 96 ALTATSQKHKLTVVLEAV-NRSLQLEEWQAKWSVESIFNKDLLS-----TLHLLVALAKR 149
A++ + H + +VL+ + +R ++L + +I +KD++ TL LL +A
Sbjct: 999 AISRLQKMHNVDIVLQVLKSRGIELSDEHGN----TILSKDIVDRHREKTLRLLWKIAFA 1054
Query: 150 FQPDLSLPTN-VQVEVITIESTKSGLKSEKLVEQLTEYSTDKDEPPKDV-----FDELFK 203
FQ D+SL + ++ E+ ++ TKS K+ L+ ++ +K + +D + E K
Sbjct: 1055 FQVDISLNLDQLKEEIAFLKHTKSIKKTISLLSCHSDDLINKKKGKRDSGSFEQYSENIK 1114
Query: 204 LAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLI 248
L + VNAV F N+K V+N F+DG +L LI
Sbjct: 1115 LLMDWVNAV----CAFYNKK-------VENFTVSFSDGRVLCYLI 1148
Score = 36.6 bits (83), Expect = 0.032
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 217 VNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVT 276
VN V D +V NL GV L+ + L + K+ + S + +HNV
Sbjct: 951 VNHVQTPFDEFDFAVTNLAVDLQCGVRLVRTMELLTQNWDLSKKLRIPAISRLQKMHNVD 1010
Query: 277 LALELLKDEGL-----LSCPVSPEDIVNKDAKSTLRVLY 310
+ L++LK G+ + +DIV++ + TLR+L+
Sbjct: 1011 IVLQVLKSRGIELSDEHGNTILSKDIVDRHREKTLRLLW 1049
>gi|188595687 gamma filamin isoform b [Homo sapiens]
Length = 2692
Score = 38.1 bits (87), Expect = 0.011
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 189 DKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLI 248
+ DE P D L + AP K + + N+ L +G + +L +DG+ L+ L+
Sbjct: 17 ETDEMPSTEKD-LAEDAPWK-KIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALL 74
Query: 249 GQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRV 308
L ++ K F+ PN L NV++ALE L+ E + + + IV+ + K L +
Sbjct: 75 EVLSQKRMYRK-FHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGL 133
Query: 309 LYGLFCKHT 317
++ L ++
Sbjct: 134 IWTLILHYS 142
>gi|116805322 gamma filamin isoform a [Homo sapiens]
Length = 2725
Score = 38.1 bits (87), Expect = 0.011
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 189 DKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLI 248
+ DE P D L + AP K + + N+ L +G + +L +DG+ L+ L+
Sbjct: 17 ETDEMPSTEKD-LAEDAPWK-KIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALL 74
Query: 249 GQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRV 308
L ++ K F+ PN L NV++ALE L+ E + + + IV+ + K L +
Sbjct: 75 EVLSQKRMYRK-FHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGL 133
Query: 309 LYGLFCKHT 317
++ L ++
Sbjct: 134 IWTLILHYS 142
>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1
[Homo sapiens]
Length = 2564
Score = 37.7 bits (86), Expect = 0.014
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 204 LAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFYL 263
LA E+ K+ +VN L R+G + +L DG +L L+ L G E
Sbjct: 55 LADEREAVQKKTFTKWVNSHLARVGCHIGDLYVDLRDGFVLTRLLEVLSG------EQLP 108
Query: 264 TPNSPAEMLH---NVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLFCK 315
P +H NV AL+ LK++ + V DIV+ + + TL +++ + +
Sbjct: 109 RPTRGRMRIHSLENVDKALQFLKEQRVHLENVGSHDIVDGNHRLTLGLVWTIILR 163
>gi|160420317 filamin A, alpha isoform 2 [Homo sapiens]
Length = 2647
Score = 37.0 bits (84), Expect = 0.024
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 213 KEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTPNSPAEML 272
+ + N+ L + + NL T +DG+ L+ L+ L +H K P L
Sbjct: 46 QNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQ-RPTFRQMQL 104
Query: 273 HNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLFCKHT 317
NV++ALE L E + + + IV+ + K L +++ L ++
Sbjct: 105 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYS 149
>gi|116063573 filamin A, alpha isoform 1 [Homo sapiens]
Length = 2639
Score = 37.0 bits (84), Expect = 0.024
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 213 KEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTPNSPAEML 272
+ + N+ L + + NL T +DG+ L+ L+ L +H K P L
Sbjct: 46 QNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQ-RPTFRQMQL 104
Query: 273 HNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLFCKHT 317
NV++ALE L E + + + IV+ + K L +++ L ++
Sbjct: 105 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYS 149
>gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo
sapiens]
Length = 2364
Score = 37.0 bits (84), Expect = 0.024
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 204 LAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFYL 263
LA E+ K+ +VN L R+ + +L T DG +L+ L+ L G E
Sbjct: 48 LADEREAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSG------ERLP 101
Query: 264 TPNSPAEMLH---NVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLFCK 315
P +H NV AL+ LK++ + + DIV+ + + TL +++ + +
Sbjct: 102 KPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILR 156
>gi|105990514 filamin B, beta (actin binding protein 278) [Homo
sapiens]
Length = 2602
Score = 36.6 bits (83), Expect = 0.032
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 213 KEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTPNSPAEML 272
+ + N+ L + + NL T +DG+ L+ L+ L ++ K ++ P L
Sbjct: 19 QNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRK-YHQRPTFRQMQL 77
Query: 273 HNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLFCKHT 317
NV++ALE L E + + + IV+ + K L +++ L ++
Sbjct: 78 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYS 122
>gi|9910266 kinesin family member 15 [Homo sapiens]
Length = 1388
Score = 36.6 bits (83), Expect = 0.032
Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 15/199 (7%)
Query: 15 GVEPPAEEELSKGGKKKYLPPTSRK-DPKFEELQKVLMEWINATLLPEHIVVRSLEEDMF 73
G+ A+EEL+K K+ + K + K EE+++ E+ EH++ + E+
Sbjct: 1084 GLLQSAQEELTK--KEALIQELQHKLNQKKEEVEQKKNEYNFKMRQLEHVMDSAAEDPQS 1141
Query: 74 DGLILH---HLFQRLAALKLEAEDIALTATSQKHKLTVV--------LEAVNRSLQLEEW 122
H HL + L + E ED + TS +H +T + E + QL E
Sbjct: 1142 PKTPPHFQTHLAKLLETQEQEIEDGRASKTSLEHLVTKLNEDREVKNAEILRMKEQLREM 1201
Query: 123 Q-AKWSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLVE 181
+ + + + K+ L L ++ D + P N Q++ ES K L K+VE
Sbjct: 1202 ENLRLESQQLIEKNWLLQGQLDDIKRQKENSDQNHPDNQQLKNEQEESIKERLAKSKIVE 1261
Query: 182 QLTEYSTDKDEPPKDVFDE 200
++ + D +E ++++
Sbjct: 1262 EMLKMKADLEEVQSALYNK 1280
>gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens]
Length = 2390
Score = 35.4 bits (80), Expect = 0.071
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 183 LTEYSTDKDEPPKDVFDE--LFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFAD 240
L + D D +F+ + LA E+ K+ +VN L R+ V +L + D
Sbjct: 28 LPDSDWDNDSSSARLFERSRIKALADEREAVQKKTFTKWVNSHLARVTCRVGDLYSDLRD 87
Query: 241 GVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLH---NVTLALELLKDEGLLSCPVSPEDI 297
G LL L+ L G E P +H NV AL+ LK++ + + DI
Sbjct: 88 GRNLLRLLEVLSG------EILPKPTKGRMRIHCLENVDKALQFLKEQKVHLENMGSHDI 141
Query: 298 VNKDAKSTLRVLYGLFCK 315
V+ + + TL +++ + +
Sbjct: 142 VDGNHRLTLGLVWTIILR 159
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 35.4 bits (80), Expect = 0.071
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 201 LFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKE 260
+ ++A E+ K+ ++NQ L ++ V +L DG L+ L+ L G L
Sbjct: 55 VLRIADERDKVQKKTFTKWINQHLMKVRKHVNDLYEDLRDGHNLISLLEVLSGDTL---- 110
Query: 261 FYLTPNSPAEM----LHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLY 310
P M L NV +AL+ LK + + +DI + + K TL +++
Sbjct: 111 ----PREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIW 160
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 35.4 bits (80), Expect = 0.071
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 201 LFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKE 260
+ ++A E+ K+ ++NQ L ++ V +L DG L+ L+ L G L
Sbjct: 66 VLRIADERDKVQKKTFTKWINQHLMKVRKHVNDLYEDLRDGHNLISLLEVLSGDTL---- 121
Query: 261 FYLTPNSPAEM----LHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLY 310
P M L NV +AL+ LK + + +DI + + K TL +++
Sbjct: 122 ----PREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIW 171
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 35.4 bits (80), Expect = 0.071
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 201 LFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKE 260
+ ++A E+ K+ ++NQ L ++ V +L DG L+ L+ L G L
Sbjct: 204 VLRIADERDKVQKKTFTKWINQHLMKVRKHVNDLYEDLRDGHNLISLLEVLSGDTL---- 259
Query: 261 FYLTPNSPAEM----LHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLY 310
P M L NV +AL+ LK + + +DI + + K TL +++
Sbjct: 260 ----PREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIW 309
>gi|112382252 spectrin, beta, non-erythrocytic 1 isoform 2 [Homo
sapiens]
Length = 2155
Score = 35.4 bits (80), Expect = 0.071
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 203 KLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFY 262
+L E+ K+ +VN L R+ + +L T DG +L+ L+ L G E
Sbjct: 34 QLQDEREAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSG------ERL 87
Query: 263 LTPNSPAEMLH---NVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLFCK 315
P +H NV AL+ LK++ + + DIV+ + + TL +++ + +
Sbjct: 88 PKPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILR 143
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 35.4 bits (80), Expect = 0.071
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 192 EPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQL 251
+P + + +E+ L E+ K+ +VN+ L + + +L DG L+ L+ L
Sbjct: 2 DPSRAIQNEISSLKDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVL 61
Query: 252 EGFFLHLKEFYLTPNSPAEM----LHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLR 307
G L P M L NV +AL+ L+ + + +DI + + K TL
Sbjct: 62 SGDSL--------PREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLG 113
Query: 308 VLY 310
+++
Sbjct: 114 LIW 116
>gi|120953251 neuron navigator 3 [Homo sapiens]
Length = 2363
Score = 35.4 bits (80), Expect = 0.071
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 231 VQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSC 290
+++L ADGV+L +I + +++ P S ++M+ NV + L L G+
Sbjct: 100 IKDLQQDIADGVLLAEIIQIIANE--KVEDINGCPRSQSQMIENVDVCLSFLAARGVNVQ 157
Query: 291 PVSPEDIVNKDAKSTLRVLYGLFCKHTQKAHRDR 324
+S E+I N + K+ L + + L Q+ H+ +
Sbjct: 158 GLSAEEIRNGNLKAILGLFFSLSRYKQQQHHQQQ 191
Score = 30.4 bits (67), Expect = 2.3
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 14 KGVEPPAEEELSKGGKKKYLPPTSRKD---------PKFEELQKVLMEWINATLLPEHIV 64
+G E + + + G KK PP+S D P +L + +A++ P
Sbjct: 1705 RGSELRSSFKQAFGKKKSTKPPSSHSDIEELTDSSLPASPKLPHNAGDCGSASMKPSQSA 1764
Query: 65 VRSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNR 115
E + I+ L L +L+ DI L A S H L + EA+NR
Sbjct: 1765 SAICECTEAEAEIILQLKSELREKELKLTDIRLEALSSAHHLDQIREAMNR 1815
Score = 28.5 bits (62), Expect = 8.7
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 28 GKKKYLPPTSRKDPKFEELQKVLMEWINATLLPE--HIVVRSLEEDMFDGLILHHLFQRL 85
G+KK L +++ +E K+ +W N L +++ L++D+ DG++L + Q +
Sbjct: 65 GEKKPLQGKAKE----KEDSKIYTDWANHYLAKSGHKRLIKDLQQDIADGVLLAEIIQII 120
Query: 86 AALKLE 91
A K+E
Sbjct: 121 ANEKVE 126
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 35.0 bits (79), Expect = 0.093
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 203 KLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFY 262
++A E+ K+ +VN+ L ++ + +L DG L+ L+ L G L
Sbjct: 71 RVADERDRVQKKTFTKWVNKHLMKVRKHINDLYEDLRDGHNLISLLEVLSGIKL------ 124
Query: 263 LTPNSPAEM----LHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLY 310
P M L NV +AL+ LK + + +DI + + K TL +++
Sbjct: 125 --PREKGRMRFHRLQNVQIALDFLKQRQVKLVNIRNDDITDGNPKLTLGLIW 174
Score = 32.0 bits (71), Expect = 0.78
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 19 PAEEELSKGGKKKYLPPTSRK-----DPKFEELQKVLMEWINATLLPEHIVVRSLEEDMF 73
P E+ + + L P R D + +K +W+N L+ + L ED+
Sbjct: 48 PLHEQKKRKSQDSVLDPAERAVVRVADERDRVQKKTFTKWVNKHLMKVRKHINDLYEDLR 107
Query: 74 DGLILHHLFQRLAALKLEAE 93
DG L L + L+ +KL E
Sbjct: 108 DGHNLISLLEVLSGIKLPRE 127
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 33.9 bits (76), Expect = 0.21
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 207 EKVNAVKEAIVNFVNQKLDRLGLS-VQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTP 265
E+ + K+ +VN + + G ++NL + DG LL L+ L G L ++
Sbjct: 4 EREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKEK----G 59
Query: 266 NSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGL 312
++ L+NV AL +L++ + + DIV+ + K TL +++ +
Sbjct: 60 STRVHALNNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNI 106
>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
Length = 3681
Score = 33.9 bits (76), Expect = 0.21
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 207 EKVNAVKEAIVNFVNQKLDRLGLS-VQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTP 265
E+ + K+ +VN + + G ++NL + DG LL L+ L G L ++
Sbjct: 8 EREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKEK----G 63
Query: 266 NSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGL 312
++ L+NV AL +L++ + + DIV+ + K TL +++ +
Sbjct: 64 STRVHALNNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNI 110
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,705,876
Number of Sequences: 37866
Number of extensions: 547762
Number of successful extensions: 1918
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1824
Number of HSP's gapped (non-prelim): 154
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.