Guide to the Human Genome
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Name: PARVA Sequence: fasta or formatted (372aa) NCBI GI: 8922673
Description:

parvin, alpha

Referenced in:

Spectrin and Plectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         16           1
 C cysteine            0.3          1           1
 D aspartate           5.9         22           2
 E glutamate           8.9         33           2
 F phenylalanine       4.0         15           2
 G glycine             3.8         14           2
 H histidine           1.9          7           1
 I isoleucine          4.6         17           2
 K lysine              8.6         32           2
 L leucine            13.7         51           2
 M methionine          1.9          7           1
 N asparagine          4.6         17           1
 P proline             6.2         23           2
 Q glutamine           4.8         18           1
 R arginine            4.3         16           2
 S serine              6.5         24           1
 T threonine           4.8         18           1
 V valine              8.9         33           4
 W tryptophan          0.5          2           1
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   parvin, alpha 
PARVB                 0.736   parvin, beta isoform b 
PARVB                 0.668   parvin, beta isoform a 
PARVG                 0.324   parvin, gamma 
PARVG                 0.324   parvin, gamma 
PARVG                 0.324   parvin, gamma 
ACTN3                 0.036   actinin, alpha 3 
ACTN2                 0.034   actinin, alpha 2 
ACTN4                 0.031   actinin, alpha 4 
ACTN1                 0.030   actinin, alpha 1 isoform c 
ACTN1                 0.030   actinin, alpha 1 isoform a 
ACTN1                 0.030   actinin, alpha 1 isoform b 
MACF1                 0.026   microfilament and actin filament cross-linker protei...
PLEC1                 0.026   plectin 1 isoform 8 
LOC652460             0.024   PREDICTED: similar to plectin 1, partial 
PLEC1                 0.024   plectin 1 isoform 6 
PLEC1                 0.024   plectin 1 isoform 3 
PLEC1                 0.024   plectin 1 isoform 1 
SPTBN1                0.024   spectrin, beta, non-erythrocytic 1 isoform 1 
PLEC1                 0.024   plectin 1 isoform 7 
SPTBN1                0.023   spectrin, beta, non-erythrocytic 1 isoform 2 
PLEC1                 0.023   plectin 1 isoform 11 
PLEC1                 0.023   plectin 1 isoform 10 
PLEC1                 0.023   plectin 1 isoform 2 
FLNC                  0.023   gamma filamin isoform b 
FLNC                  0.023   gamma filamin isoform a 
DST                   0.023   dystonin isoform 1 
NAV3                  0.023   neuron navigator 3 
DIXDC1                0.021   DIX domain containing 1 isoform a 
DST                   0.021   dystonin isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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