Guide to the Human Genome
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Name: PARVB Sequence: fasta or formatted (364aa) NCBI GI: 20127528
Description:

parvin, beta isoform b

Referenced in:

Spectrin and Plectin Families

Other entries for this name:
alt prot [397aa] parvin, beta isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         17           1
 C cysteine            0.3          1           1
 D aspartate           6.0         22           1
 E glutamate           9.1         33           2
 F phenylalanine       3.8         14           1
 G glycine             4.1         15           2
 H histidine           3.6         13           2
 I isoleucine          3.0         11           2
 K lysine              8.0         29           2
 L leucine            14.6         53           2
 M methionine          2.7         10           3
 N asparagine          3.6         13           1
 P proline             4.7         17           1
 Q glutamine           3.3         12           1
 R arginine            5.8         21           2
 S serine              5.5         20           2
 T threonine           5.2         19           4
 V valine              9.6         35           4
 W tryptophan          0.8          3           1
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   parvin, beta isoform b 
PARVB                 0.895   parvin, beta isoform a 
PARVA                 0.746   parvin, alpha 
PARVG                 0.340   parvin, gamma 
PARVG                 0.340   parvin, gamma 
PARVG                 0.340   parvin, gamma 
ACTN4                 0.033   actinin, alpha 4 
ACTN1                 0.032   actinin, alpha 1 isoform c 
ACTN1                 0.032   actinin, alpha 1 isoform a 
ACTN1                 0.032   actinin, alpha 1 isoform b 
ACTN3                 0.030   actinin, alpha 3 
ACTN2                 0.027   actinin, alpha 2 
DIXDC1                0.026   DIX domain containing 1 isoform a 
DST                   0.026   dystonin isoform 4 
DST                   0.026   dystonin isoform 3 
DST                   0.026   dystonin isoform 2 
MACF1                 0.024   microfilament and actin filament cross-linker protei...
SPTBN1                0.024   spectrin, beta, non-erythrocytic 1 isoform 1 
PLEC1                 0.024   plectin 1 isoform 6 
LOC652460             0.023   PREDICTED: similar to plectin 1, partial 
FLNC                  0.022   gamma filamin isoform b 
FLNC                  0.022   gamma filamin isoform a 
FLNB                  0.022   filamin B, beta (actin binding protein 278) 
DST                   0.020   dystonin isoform 1 
SPTBN1                0.020   spectrin, beta, non-erythrocytic 1 isoform 2 
PLEC1                 0.020   plectin 1 isoform 8 
FLNA                  0.020   filamin A, alpha isoform 2 
FLNA                  0.020   filamin A, alpha isoform 1 
PLEC1                 0.020   plectin 1 isoform 1 
SPTB                  0.020   spectrin beta isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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