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Search of human proteins with 211938454
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|211938454 LysM, putative peptidoglycan-binding, domain
containing 1 isoform b [Homo sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|211938454 LysM, putative peptidoglycan-binding, domain contai... 362 e-101
gi|47086487 LysM, putative peptidoglycan-binding, domain contain... 337 2e-93
gi|221139701 LysM, putative peptidoglycan-binding, domain contai... 80 7e-16
gi|23503313 LysM, putative peptidoglycan-binding, domain contain... 80 7e-16
gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens] 33 0.13
gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens] 33 0.13
gi|7657550 sentrin/SUMO-specific protease 1 [Homo sapiens] 33 0.17
gi|21361766 zinc finger protein 692 isoform 2 [Homo sapiens] 33 0.17
gi|209862873 zinc finger protein 692 isoform 1 [Homo sapiens] 33 0.17
gi|4502425 bone morphogenetic protein 6 preproprotein [Homo sapi... 32 0.22
gi|222418633 family with sequence similarity 71, member B [Homo ... 32 0.29
gi|157694494 MYB binding protein 1a isoform 1 [Homo sapiens] 32 0.38
gi|157694492 MYB binding protein 1a isoform 2 [Homo sapiens] 32 0.38
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 31 0.65
gi|4885073 activating transcription factor 1 [Homo sapiens] 30 1.1
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 30 1.1
gi|30181233 leucine-rich repeats and calponin homology (CH) doma... 30 1.1
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 30 1.1
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 30 1.4
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 29 1.9
gi|221219020 NYD-SP11 protein [Homo sapiens] 29 2.5
gi|223633988 hypothetical protein LOC85379 [Homo sapiens] 29 2.5
gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo ... 29 2.5
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 29 2.5
gi|12751473 DNA cytosine methyltransferase 3 alpha isoform a [Ho... 29 2.5
gi|28559071 DNA cytosine methyltransferase 3 alpha isoform c [Ho... 29 2.5
gi|28559069 DNA cytosine methyltransferase 3 alpha isoform a [Ho... 29 2.5
gi|47604944 SCY1-like 2 protein [Homo sapiens] 29 2.5
gi|29826296 melanoma antigen family F, 1 [Homo sapiens] 29 2.5
gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform... 28 3.2
>gi|211938454 LysM, putative peptidoglycan-binding, domain
containing 1 isoform b [Homo sapiens]
Length = 179
Score = 362 bits (930), Expect = e-101
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MRSGPLRISEWKMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEK 60
MRSGPLRISEWKMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEK
Sbjct: 1 MRSGPLRISEWKMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEK 60
Query: 61 VHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLS 120
VHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLS
Sbjct: 61 VHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLS 120
Query: 121 KKAAAQKLKKGENGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL 179
KKAAAQKLKKGENGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL
Sbjct: 121 KKAAAQKLKKGENGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL 179
>gi|47086487 LysM, putative peptidoglycan-binding, domain containing
1 isoform a [Homo sapiens]
Length = 227
Score = 337 bits (865), Expect = 2e-93
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 13 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS 72
MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS
Sbjct: 61 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS 120
Query: 73 TERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLSKKAAAQKLKKGE 132
TERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLSKKAAAQKLKKGE
Sbjct: 121 TERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLSKKAAAQKLKKGE 180
Query: 133 NGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL 179
NGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL
Sbjct: 181 NGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL 227
>gi|221139701 LysM, putative peptidoglycan-binding, domain
containing 2 isoform 2 [Homo sapiens]
Length = 124
Score = 80.5 bits (197), Expect = 7e-16
Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 18/122 (14%)
Query: 13 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS 72
MEQIKRAN+L+TND IFLKKTL IP+++E LFNGL+S + + E + + E P
Sbjct: 1 MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEP-- 58
Query: 73 TERKKQETGAGRANGEVLPTPGQE----TPTPIHDLSASDFLKKLDSQISLSKKAAAQKL 128
GE LP P + P ++SA DFL++LD QI LS + AA+KL
Sbjct: 59 -----------VVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQ-AAKKL 106
Query: 129 KK 130
K+
Sbjct: 107 KE 108
>gi|23503313 LysM, putative peptidoglycan-binding, domain containing
2 isoform 1 [Homo sapiens]
Length = 215
Score = 80.5 bits (197), Expect = 7e-16
Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 18/122 (14%)
Query: 13 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS 72
MEQIKRAN+L+TND IFLKKTL IP+++E LFNGL+S + + E + + E P
Sbjct: 92 MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEP-- 149
Query: 73 TERKKQETGAGRANGEVLPTPGQE----TPTPIHDLSASDFLKKLDSQISLSKKAAAQKL 128
GE LP P + P ++SA DFL++LD QI LS + AA+KL
Sbjct: 150 -----------VVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQ-AAKKL 197
Query: 129 KK 130
K+
Sbjct: 198 KE 199
>gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens]
Length = 1523
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 41 EPRDLFNGLDSEEEKD-GEEKVHPS--NSEVWPHSTERKKQETGAGRANGEVLPTPGQET 97
E DL+ L S + D G+++ ++ +W HS + G A + LP+PG +
Sbjct: 1430 EALDLYRVLVSSGQVDTGQQQARTELVSTFLWIHSQLEAECLVGTSVAPAQALPSPGPPS 1489
Query: 98 PTPIHDLSASDFLKKLDSQISLSKKAAAQKLK 129
P ++ L++ D L+ L +A +K +
Sbjct: 1490 PPTLYPLASPDLQALLEHYSELLVQAVRRKAR 1521
>gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens]
Length = 1518
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 41 EPRDLFNGLDSEEEKD-GEEKVHPS--NSEVWPHSTERKKQETGAGRANGEVLPTPGQET 97
E DL+ L S + D G+++ ++ +W HS + G A + LP+PG +
Sbjct: 1425 EALDLYRVLVSSGQVDTGQQQARTELVSTFLWIHSQLEAECLVGTSVAPAQALPSPGPPS 1484
Query: 98 PTPIHDLSASDFLKKLDSQISLSKKAAAQKLK 129
P ++ L++ D L+ L +A +K +
Sbjct: 1485 PPTLYPLASPDLQALLEHYSELLVQAVRRKAR 1516
>gi|7657550 sentrin/SUMO-specific protease 1 [Homo sapiens]
Length = 643
Score = 32.7 bits (73), Expect = 0.17
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 29/143 (20%)
Query: 55 KDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEV--LPTPGQETPTP------------ 100
KD HP + PH + + V L +TPTP
Sbjct: 284 KDSGTLHHPHHHHSVPHQPDNLAASNTQSEGSDSVILLKVKDSQTPTPSSTFFQAELWIK 343
Query: 101 ----IHDLSASDFLKKLDSQISLSKKAAAQKLKKGENGVPGEDAGLHLSSPWMQQRAVLG 156
++D A + L++++ Q +L+ + Q+L++ E+ V + LHL P ++
Sbjct: 344 ELTSVYDSRARERLRQIEEQKALALQLQNQRLQEREHSV-HDSVELHLRVPLEKE----- 397
Query: 157 PVPLTRTSRTR----TLRDQEDE 175
+P+T T+ L D EDE
Sbjct: 398 -IPVTVVQETQKKGHKLTDSEDE 419
>gi|21361766 zinc finger protein 692 isoform 2 [Homo sapiens]
Length = 519
Score = 32.7 bits (73), Expect = 0.17
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 22/135 (16%)
Query: 50 DSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGR----------ANGEVLPTPGQ-ETP 98
+ EE+ D +E+ S++ +W +S+ E A R GE P P +P
Sbjct: 193 EEEEDNDEDEEEMLSDASLWTYSSSPDDSEPDAPRLLPSPVTCTPKEGETPPAPAALSSP 252
Query: 99 TPIHDLSASDFLK--------KLDSQISLSKKAAAQKLKKGENGVPGEDAGLHLSSPWMQ 150
+ LSAS ++ Q+S + +AA Q G + A + W +
Sbjct: 253 LAVPALSASSLSSRAPPPAEVRVQPQLSRTPQAAQQTEALASTGSQAQSAP---TPAWDE 309
Query: 151 QRAVLGPVPLTRTSR 165
A +GP + + ++
Sbjct: 310 DTAQIGPKRIRKAAK 324
>gi|209862873 zinc finger protein 692 isoform 1 [Homo sapiens]
Length = 524
Score = 32.7 bits (73), Expect = 0.17
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 22/135 (16%)
Query: 50 DSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGR----------ANGEVLPTPGQ-ETP 98
+ EE+ D +E+ S++ +W +S+ E A R GE P P +P
Sbjct: 198 EEEEDNDEDEEEMLSDASLWTYSSSPDDSEPDAPRLLPSPVTCTPKEGETPPAPAALSSP 257
Query: 99 TPIHDLSASDFLK--------KLDSQISLSKKAAAQKLKKGENGVPGEDAGLHLSSPWMQ 150
+ LSAS ++ Q+S + +AA Q G + A + W +
Sbjct: 258 LAVPALSASSLSSRAPPPAEVRVQPQLSRTPQAAQQTEALASTGSQAQSAP---TPAWDE 314
Query: 151 QRAVLGPVPLTRTSR 165
A +GP + + ++
Sbjct: 315 DTAQIGPKRIRKAAK 329
>gi|4502425 bone morphogenetic protein 6 preproprotein [Homo
sapiens]
Length = 513
Score = 32.3 bits (72), Expect = 0.22
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 44 DLFNGLDSEEEKDGEEKVHPSNSEVWPH----STERKKQETGAGR-ANGEVLPTPGQET- 97
DL+N L ++ ++DG + S WPH S++R++ GA N + L PG +
Sbjct: 138 DLYNALSADNDEDGASEGERQQS--WPHEAASSSQRRQPPPGAAHPLNRKSLLAPGSGSG 195
Query: 98 -PTPIHDLSASDFLKKLDSQIS 118
+P+ S FL D +S
Sbjct: 196 GASPLTSAQDSAFLNDADMVMS 217
>gi|222418633 family with sequence similarity 71, member B [Homo
sapiens]
Length = 605
Score = 32.0 bits (71), Expect = 0.29
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 45 LFNGLDSE---EEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPTPI 101
L + L SE E+DG +KV ++EVW + ER++++ G+
Sbjct: 398 LISTLQSEGYMSERDGSQKVSQPSAEVWNENKERREKKDRHPSRKSSHHRKAGES----- 452
Query: 102 HDLSASDFLKKLDSQISLS--KKAAAQKLKKGENGVPGEDAG 141
H A D +K S S S K K +KG + V G+ G
Sbjct: 453 HRRRAGDKNQKASSHRSASGHKNTRDDKKEKGYSNVRGKRHG 494
>gi|157694494 MYB binding protein 1a isoform 1 [Homo sapiens]
Length = 1332
Score = 31.6 bits (70), Expect = 0.38
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Query: 51 SEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFL 110
SE+ E+ + P S RKK+ + + TP ++P P +
Sbjct: 1186 SEDGTPAEDGTPAATGGSQPPSMGRKKRNRTKAKVPAQANGTPTTKSPAPGAPTRSPSTP 1245
Query: 111 KKLDSQISLSKKAAAQKLKKGENGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTR 167
K L KK G G P E AG + ++ VLG PL+ +R +
Sbjct: 1246 AKSPK---LQKKNQKPSQVNGAPGSPTEPAGQKQHQKALPKKGVLGKSPLSALARKK 1299
>gi|157694492 MYB binding protein 1a isoform 2 [Homo sapiens]
Length = 1328
Score = 31.6 bits (70), Expect = 0.38
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Query: 51 SEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFL 110
SE+ E+ + P S RKK+ + + TP ++P P +
Sbjct: 1186 SEDGTPAEDGTPAATGGSQPPSMGRKKRNRTKAKVPAQANGTPTTKSPAPGAPTRSPSTP 1245
Query: 111 KKLDSQISLSKKAAAQKLKKGENGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTR 167
K L KK G G P E AG + ++ VLG PL+ +R +
Sbjct: 1246 AKSPK---LQKKNQKPSQVNGAPGSPTEPAGQKQHQKALPKKGVLGKSPLSALARKK 1299
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 30.8 bits (68), Expect = 0.65
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 16/75 (21%)
Query: 26 DSIFLKKTLYI--PILTEPRDLFNGLD----------SEEEKDGEEKVHPSNSEVWPHST 73
+S++ K L + P+ EP+ L + +EEE+DG +K +PS + S+
Sbjct: 70 ESLYTKNYLPLLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDGRKKKYPSPQKTRSESS 129
Query: 74 ER----KKQETGAGR 84
ER KK+E G R
Sbjct: 130 ERRTREKKREDGKWR 144
>gi|4885073 activating transcription factor 1 [Homo sapiens]
Length = 271
Score = 30.0 bits (66), Expect = 1.1
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 41 EPRDLFNGLDSEEEKDGEEKVHPSNSEVWPH-STERKKQETGAGRANGEVLPTPGQETPT 99
E +D + + S ++ G PS ++ S+E + G G +G PT
Sbjct: 40 ESQDSSDSIGSSQKAHGILARRPSYRKILKDLSSEDTRGRKGDGENSGVSAAVTSMSVPT 99
Query: 100 PIHDLSASDFLKKLDSQISLSKKAAAQKLKKGENGVPG 137
PI+ S+ + I+++ A Q G +GV G
Sbjct: 100 PIYQTSSGQY-------IAIAPNGALQLASPGTDGVQG 130
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 30.0 bits (66), Expect = 1.1
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 50 DSEEEKDGE--------EKVHPSNSEVW-PHSTERKKQETGAGRANGEVLPTPGQETPTP 100
DS EEKDGE +V + E++ P S + K ++ G+ R + + T +
Sbjct: 4 DSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQKPS 63
Query: 101 IHDLSASDFLKKLDSQISLSKKAAAQKLK 129
+H S K L S +S +K+ + K K
Sbjct: 64 VH--SRQLVSKPLSSSVSNNKRIVSTKGK 90
>gi|30181233 leucine-rich repeats and calponin homology (CH) domain
containing 4 [Homo sapiens]
Length = 683
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 53 EEKDGEEKVHPSNSEVWPHSTERKKQETGA-GRANGEVLPTPG 94
EE GEE+ P ++W R++Q++GA G + L PG
Sbjct: 395 EEPAGEERRRPDTLQLWQERERRQQQQSGAWGAPRKDSLLKPG 437
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 30.0 bits (66), Expect = 1.1
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 50 DSEEEKDGE--------EKVHPSNSEVW-PHSTERKKQETGAGRANGEVLPTPGQETPTP 100
DS EEKDGE +V + E++ P S + K ++ G+ R + + T +
Sbjct: 4 DSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQKPS 63
Query: 101 IHDLSASDFLKKLDSQISLSKKAAAQKLK 129
+H S K L S +S +K+ + K K
Sbjct: 64 VH--SRQLVSKPLSSSVSNNKRIVSTKGK 90
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 29.6 bits (65), Expect = 1.4
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 13 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHP--SNSEVWP 70
ME++K +R D L+ T PIL + N SEEE++ E++ + W
Sbjct: 968 MEKLKTCSRANELDPDSLRWT---PIL-----ISNAAVSEEEREAEKEAERLMEQASCW- 1018
Query: 71 HSTERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLSKKAAAQK 127
E+++QE + RAN P Q +H + + + LSK+++ ++
Sbjct: 1019 ---EKEEQEILSTRANSRQSPAKVQSKNKYLHSPESRPVTGERGQLLELSKESSEEE 1072
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 29.3 bits (64), Expect = 1.9
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 48 GLDSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTP--GQETPT-PIHDL 104
GL E G+E S+ + + QE AGRA+ P P G E PT P L
Sbjct: 1398 GLPEEGSVHGQELSEASSPDGKGSQEDDPVQEEEAGRASASAEPCPAEGTEEPTEPPSHL 1457
Query: 105 SASDFLKKLDSQISLSKKAAAQKLKKGENGVPG 137
S +D S S++ + +L+ G PG
Sbjct: 1458 SETD--------PSASERQSGSQLEPGLEKPPG 1482
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 49 LDSEEEKDGEEKVHPSNSEVWPHSTERKKQETG 81
L SEEE++ EE+ EV ERK++E G
Sbjct: 2243 LSSEEEEEREEEEEREEEEVREEEEERKEEEEG 2275
>gi|223633988 hypothetical protein LOC85379 [Homo sapiens]
Length = 1806
Score = 28.9 bits (63), Expect = 2.5
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 66 SEVWPHSTERKKQETGAGRANGEVLPTPGQET----PTPIHDLSASDFLKKLDSQISLSK 121
S ++ S + +K GA G+V PTP ++T P P+ + D + +++ +L +
Sbjct: 244 SAIFTESIQPQKPGPGAAATVGKVPPTPPEKTWVRKPRPL----SMDLTARFENKEALLR 299
Query: 122 KAAAQKLKKGENGVPGEDAGL 142
K A +G G+ AGL
Sbjct: 300 KVA----DEGSGPTAGDMAGL 316
>gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo
sapiens]
Length = 1595
Score = 28.9 bits (63), Expect = 2.5
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 66 SEVWPHSTERKKQETGAGRANGEVLPTPGQET----PTPIHDLSASDFLKKLDSQISLSK 121
S ++ S + +K GA G+V PTP ++T P P+ + D + +++ +L +
Sbjct: 244 SAIFTESIQPQKPGPGAAATVGKVPPTPPEKTWVRKPRPL----SMDLTARFENKEALLR 299
Query: 122 KAAAQKLKKGENGVPGEDAGL 142
K A +G G+ AGL
Sbjct: 300 KVA----DEGSGPTAGDMAGL 316
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 28.9 bits (63), Expect = 2.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 50 DSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVL 90
+ EEE+D EE+ E E +++E A A GEVL
Sbjct: 742 EEEEEEDEEEEEEEEEEEEEEEEEEEEEEEAAAAVALGEVL 782
>gi|12751473 DNA cytosine methyltransferase 3 alpha isoform a [Homo
sapiens]
Length = 912
Score = 28.9 bits (63), Expect = 2.5
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 20/105 (19%)
Query: 52 EEEKDGEEKVHPSNSE--VWPHSTERKKQETGAGRANGEVL-------PTPGQETPTPIH 102
E+ KDGEE+ P E P +T RK G R + V P ++P+
Sbjct: 21 EDRKDGEEQEEPRGKEERQEPSTTARKVGRPGRKRKHPPVESGDTPKDPAVISKSPSMAQ 80
Query: 103 DLSASDFL------KKLDSQISLSKKAAAQKLKKGENGVPGEDAG 141
D AS+ L K+ + Q A QK G P E G
Sbjct: 81 DSGASELLPNGDLEKRSEPQPEEGSPAGGQK-----GGAPAEGEG 120
>gi|28559071 DNA cytosine methyltransferase 3 alpha isoform c [Homo
sapiens]
Length = 166
Score = 28.9 bits (63), Expect = 2.5
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 20/105 (19%)
Query: 52 EEEKDGEEKVHPSNSE--VWPHSTERKKQETGAGRANGEVL-------PTPGQETPTPIH 102
E+ KDGEE+ P E P +T RK G R + V P ++P+
Sbjct: 21 EDRKDGEEQEEPRGKEERQEPSTTARKVGRPGRKRKHPPVESGDTPKDPAVISKSPSMAQ 80
Query: 103 DLSASDFL------KKLDSQISLSKKAAAQKLKKGENGVPGEDAG 141
D AS+ L K+ + Q A QK G P E G
Sbjct: 81 DSGASELLPNGDLEKRSEPQPEEGSPAGGQK-----GGAPAEGEG 120
>gi|28559069 DNA cytosine methyltransferase 3 alpha isoform a [Homo
sapiens]
Length = 912
Score = 28.9 bits (63), Expect = 2.5
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 20/105 (19%)
Query: 52 EEEKDGEEKVHPSNSE--VWPHSTERKKQETGAGRANGEVL-------PTPGQETPTPIH 102
E+ KDGEE+ P E P +T RK G R + V P ++P+
Sbjct: 21 EDRKDGEEQEEPRGKEERQEPSTTARKVGRPGRKRKHPPVESGDTPKDPAVISKSPSMAQ 80
Query: 103 DLSASDFL------KKLDSQISLSKKAAAQKLKKGENGVPGEDAG 141
D AS+ L K+ + Q A QK G P E G
Sbjct: 81 DSGASELLPNGDLEKRSEPQPEEGSPAGGQK-----GGAPAEGEG 120
>gi|47604944 SCY1-like 2 protein [Homo sapiens]
Length = 929
Score = 28.9 bits (63), Expect = 2.5
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 5/108 (4%)
Query: 44 DLFNGLDSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPT---- 99
DL G +SE ++DG + H S + K++ A + + P TP
Sbjct: 655 DLLTGSESENKEDGLQNKHKRASLTLEEKQKLAKEQEQAQKLKSQQPLKPQVHTPVATVK 714
Query: 100 PIHDLSASDFLKKLDSQISLSKKAAAQKLKKGENGVPGEDAGLHLSSP 147
DL+ + + S SLS VP G+ S+P
Sbjct: 715 QTKDLT-DTLMDNMSSLTSLSVSTPKSSASSTFTSVPSMGIGMMFSTP 761
>gi|29826296 melanoma antigen family F, 1 [Homo sapiens]
Length = 307
Score = 28.9 bits (63), Expect = 2.5
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 51 SEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLP 91
+E EKDG H + S ER K+E GAGR G P
Sbjct: 15 AEGEKDGG---HDGETRAPTASQERPKEELGAGREEGAAEP 52
>gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform a
[Homo sapiens]
Length = 845
Score = 28.5 bits (62), Expect = 3.2
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 41 EPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPT- 99
+P++ F LD+EEE EE + +K ++ GE G E+
Sbjct: 188 KPQNKFAALDNEEEDKEEEIIKEKEPPKQGKEKAKKAEQGSEEEGEGEEEEEEGGESKAD 247
Query: 100 -PIHDLSASDFLKKLDSQISLSKKAAAQK 127
P LS + KKL Q+ ++ A+ K
Sbjct: 248 DPYAHLSKKE-KKKLKKQMEYERQVASLK 275
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,780,810
Number of Sequences: 37866
Number of extensions: 385092
Number of successful extensions: 1411
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 74
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.