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Search of human proteins with 21040257
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21040257 TruB pseudouridine (psi) synthase homolog 1 [Homo
sapiens]
(349 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21040257 TruB pseudouridine (psi) synthase homolog 1 [Homo sa... 677 0.0
gi|7661556 TruB pseudouridine (psi) synthase homolog 2 [Homo sap... 112 5e-25
gi|4503337 dyskerin isoform 1 [Homo sapiens] 67 2e-11
gi|215599015 dyskerin isoform 2 [Homo sapiens] 67 2e-11
gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens] 35 0.13
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 33 0.38
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 33 0.50
gi|19923559 EMSY protein [Homo sapiens] 33 0.50
gi|7661892 REST corepressor 1 [Homo sapiens] 32 0.65
gi|223646113 Sp9 transcription factor homolog [Homo sapiens] 32 1.1
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 32 1.1
gi|225735627 disco-interacting protein 2A isoform f [Homo sapiens] 32 1.1
gi|151301228 formin binding protein 3 [Homo sapiens] 32 1.1
gi|110349719 titin isoform N2-A [Homo sapiens] 31 1.4
gi|110349717 titin isoform novex-2 [Homo sapiens] 31 1.4
gi|110349713 titin isoform novex-1 [Homo sapiens] 31 1.4
gi|110349715 titin isoform N2-B [Homo sapiens] 31 1.4
gi|50428940 mediator complex subunit 25 [Homo sapiens] 31 1.4
gi|19111150 angiomotin isoform 2 [Homo sapiens] 31 1.9
gi|166064029 angiomotin isoform 1 [Homo sapiens] 31 1.9
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 31 1.9
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 30 2.5
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 30 2.5
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 30 2.5
gi|47419907 T-box 3 protein isoform 2 [Homo sapiens] 30 3.2
gi|47419905 T-box 3 protein isoform 1 [Homo sapiens] 30 3.2
gi|115511046 zinc finger protein 258 [Homo sapiens] 30 3.2
gi|194248057 growth associated protein 43 isoform 1 [Homo sapiens] 30 3.2
gi|4503911 growth associated protein 43 isoform 2 [Homo sapiens] 30 3.2
gi|222446620 hypothetical protein LOC342346 [Homo sapiens] 30 4.2
>gi|21040257 TruB pseudouridine (psi) synthase homolog 1 [Homo
sapiens]
Length = 349
Score = 677 bits (1747), Expect = 0.0
Identities = 349/349 (100%), Positives = 349/349 (100%)
Query: 1 MAASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAA 60
MAASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAA
Sbjct: 1 MAASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAA 60
Query: 61 LATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTL 120
LATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTL
Sbjct: 61 LATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTL 120
Query: 121 DSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQE 180
DSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQE
Sbjct: 121 DSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQE 180
Query: 181 DIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQP 240
DIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQP
Sbjct: 181 DIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQP 240
Query: 241 PFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDI 300
PFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDI
Sbjct: 241 PFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDI 300
Query: 301 AQSLEHCSSLFPAELALKKSKPESNEQVLSCEYITLNEPKREDDVIKTC 349
AQSLEHCSSLFPAELALKKSKPESNEQVLSCEYITLNEPKREDDVIKTC
Sbjct: 301 AQSLEHCSSLFPAELALKKSKPESNEQVLSCEYITLNEPKREDDVIKTC 349
>gi|7661556 TruB pseudouridine (psi) synthase homolog 2 [Homo
sapiens]
Length = 331
Score = 112 bits (280), Expect = 5e-25
Identities = 92/306 (30%), Positives = 140/306 (45%), Gaps = 42/306 (13%)
Query: 65 LLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSP--------------EWTKRKKQ 110
L L G+FAV+KP G L + ++ +LL P E ++ K+
Sbjct: 6 LSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGSEEKEL 65
Query: 111 TL----------------------KIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSG--S 146
TL K+G G LD+ A GVLV+G+G G ++LT M + +
Sbjct: 66 TLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMYNAHLT 125
Query: 147 KRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPLYSALKKD 206
K YT G LGKATD GR+ E+ YD +T+E ++ IL G+ + +YS L
Sbjct: 126 KDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLK 185
Query: 207 GQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGFY--IRSLVSDIGK 264
Q + RG ++ P+ + I F PP F L+V+C +R LV +IG
Sbjct: 186 TQEAYEMAVRG-LIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGL 244
Query: 265 ELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLFPAELALKKSKPES 324
EL + A ++ RT+ G FTL+ AL +W + +I ++ + AEL S
Sbjct: 245 ELKTTAVCTQVRRTRDGFFTLDS-ALLRTQWDLTNIQDAIRAATPQVAAELEKSLSPGLD 303
Query: 325 NEQVLS 330
+Q+ S
Sbjct: 304 TKQLPS 309
>gi|4503337 dyskerin isoform 1 [Homo sapiens]
Length = 514
Score = 67.0 bits (162), Expect = 2e-11
Identities = 62/258 (24%), Positives = 102/258 (39%), Gaps = 54/258 (20%)
Query: 69 SGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVL 128
+G + KP P+S E++ W +R + K GH GTLD G L
Sbjct: 89 TGFINLDKPSNPSSHEVV----------------AWIRRILRVEKTGHSGTLDPKVTGCL 132
Query: 129 VVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQK 188
+V I T+++ S S K Y I L A + R L+
Sbjct: 133 IVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRA-----------------LET 175
Query: 189 FTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVE 248
TG + Q PPL +A+K+ R+ T+ + +++E P R + ++ +S
Sbjct: 176 LTGALFQRPPLIAAVKRQ-LRVRTIYE-SKMIEYDPERRLGIFWVS-------------- 219
Query: 249 CGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALP-----EDKWTIDDIAQS 303
C G YIR+L +G L + EL R + G + ++H + + +W D+
Sbjct: 220 CEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDE 279
Query: 304 LEHCSSLFPAELALKKSK 321
++P E L K
Sbjct: 280 SYLRRVVYPLEKLLTSHK 297
>gi|215599015 dyskerin isoform 2 [Homo sapiens]
Length = 509
Score = 67.0 bits (162), Expect = 2e-11
Identities = 62/258 (24%), Positives = 102/258 (39%), Gaps = 54/258 (20%)
Query: 69 SGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVL 128
+G + KP P+S E++ W +R + K GH GTLD G L
Sbjct: 89 TGFINLDKPSNPSSHEVV----------------AWIRRILRVEKTGHSGTLDPKVTGCL 132
Query: 129 VVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQK 188
+V I T+++ S S K Y I L A + R L+
Sbjct: 133 IVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRA-----------------LET 175
Query: 189 FTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVE 248
TG + Q PPL +A+K+ R+ T+ + +++E P R + ++ +S
Sbjct: 176 LTGALFQRPPLIAAVKRQ-LRVRTIYE-SKMIEYDPERRLGIFWVS-------------- 219
Query: 249 CGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALP-----EDKWTIDDIAQS 303
C G YIR+L +G L + EL R + G + ++H + + +W D+
Sbjct: 220 CEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDE 279
Query: 304 LEHCSSLFPAELALKKSK 321
++P E L K
Sbjct: 280 SYLRRVVYPLEKLLTSHK 297
>gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens]
Length = 1992
Score = 34.7 bits (78), Expect = 0.13
Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 13/201 (6%)
Query: 15 KTDTSPVLETAGTVAAMAATPSARAA--AAVVAAAARTGSEARVSKAALATKLLSLSGVF 72
+T++S V +G+ + A SA+ A+ A +A+ G ++ A+ S S V
Sbjct: 151 RTESSCVKSGSGSESTGAEERSAKPTKLASKSATSAKAGCSTITDSSSAASTSSSSSAVA 210
Query: 73 AVHK--PKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVLVV 130
+ P G + ++ K + A PSP + R+K+ K G D AAR V
Sbjct: 211 SASSTVPPGARVKQGKDQNKARRSRSASSPSPRRSSREKEQSKTGGSSKFDWAARFSPKV 270
Query: 131 GIGSGTKMLTSMLSGSKRYTA----IGELGKATDTLDSTGRVTEEKPYDKITQEDIEGIL 186
+ K S+ SK T+ G K ST + +E P + +
Sbjct: 271 SL---PKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELPSLR--RSTR 325
Query: 187 QKFTGNIMQVPPLYSALKKDG 207
QK TG+ S L K G
Sbjct: 326 QKTTGSCASTSRRGSGLGKRG 346
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 33.1 bits (74), Expect = 0.38
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 2 AASEAAVVSSPSLKTDTSPVLETAGT---VAAMAATPSARAAAAVVAAAARTGSEA 54
AA+ AA +P+L +P L A AA A P+ AA AV AA A S A
Sbjct: 510 AAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAA 565
Score = 30.0 bits (66), Expect = 3.2
Identities = 55/243 (22%), Positives = 88/243 (36%), Gaps = 38/243 (15%)
Query: 2 AASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAAL 61
AA+ AA ++ + +P L A A AA A AAAA A A + AA
Sbjct: 502 AAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAA 561
Query: 62 ATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLD 121
A+ S S KP P L +A P P + + +KI L
Sbjct: 562 ASAAPSHS-----QKPSVP-------------LIQASRPCPA-AQPPTKFIKIAPAIQLR 602
Query: 122 SAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKA------TDTLDSTGRVTEEKPYD 175
+ + G+ + + + ++ S K A G A +D S G + + +P
Sbjct: 603 TGSTGLKAINVEGPVQGAQALGSSFKPVQAPGSGAPAPAGISGSDLQSSGGPLPDARP-- 660
Query: 176 KITQEDIEGILQKFTG--------NIMQVPPLYSAL---KKDGQRLSTLMKRGEVVEAKP 224
Q LQ F ++QVP + L ++ +L +L + + A P
Sbjct: 661 GAVQASSPAPLQFFLNTPEGLRPLTLLQVPQGSAVLTGPQQQSHQLVSLQQLQQPTAAHP 720
Query: 225 ARP 227
+P
Sbjct: 721 PQP 723
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 32.7 bits (73), Expect = 0.50
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 4 SEAAVVSSPS-----LKTDTSPV--LETAGTVAAMAATPSARAAAAVVAAAARTGSEARV 56
S AA V +P+ L+ TSP + T+ A++AA S AAA T E
Sbjct: 1197 SPAASVPTPAAMVATLEEFTSPAASVPTSEEPASLAAAVSNPEEPTSPAAAVPTLEEPTS 1256
Query: 57 SKAALATKLLSLSGVFAVHKPKGPTS-AELLNRLKEKLLAEAGMPSPE 103
S AA+ T S +V P+ P S A ++ L+E A +P+PE
Sbjct: 1257 SAAAVLTPEELSSPAASVPTPEEPASPAAAVSNLEEPASPAAAVPTPE 1304
Score = 32.3 bits (72), Expect = 0.65
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 3 ASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAALA 62
AS AA V +P T + + T + AA AAA T E AA+
Sbjct: 1001 ASPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPPPEEPTSPAAAVPTPEEPTSPAAAVP 1060
Query: 63 TKLLSLSGVFAVHKPKGPTS-AELLNRLKEKLLAEAGMPSPE 103
T S AV P+ PTS A + +E A +P+PE
Sbjct: 1061 TPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPE 1102
Score = 30.4 bits (67), Expect = 2.5
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Query: 4 SEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAALAT 63
S AA V P T + + T + AA AAA T E AA+ T
Sbjct: 1028 SPAAAVPPPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPT 1087
Query: 64 KLLSLSGVFAVHKPKGPTS-AELLNRLKEKLLAEAGMPSPE 103
S AV P+ PTS A + +E A +P+PE
Sbjct: 1088 PEEPTSPAAAVPTPEEPTSPAAAVPTPEEPASPAAAVPTPE 1128
Score = 29.6 bits (65), Expect = 4.2
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 6 AAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAA-------ARTGSEARVSK 58
AA VS+P T + + AA+AA S A VAAA A G +
Sbjct: 898 AAAVSAPERATVPAVTVSVPEGTAAVAAVSSPEETAPAVAAAITQEGMSAVAGFSPEWAA 957
Query: 59 AALATKLLSLSG--------VFAVHKPKGP-TSAELLNRLKEKLLAEAGMPSPE 103
A+ + G VH P+ P T+A ++ +E A +P+PE
Sbjct: 958 LAITVPITEEDGTPEGPVTPATTVHAPEEPDTAAVRVSTPEEPASPAAAVPTPE 1011
>gi|19923559 EMSY protein [Homo sapiens]
Length = 1322
Score = 32.7 bits (73), Expect = 0.50
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 14/153 (9%)
Query: 1 MAASEAAVVS---SPSLKTDTSPVLETAGTVAAMAATPS---ARAAAAVVAAAARTGSEA 54
+ AS++++VS S S + SP+ T A +++TPS + A V +A + S
Sbjct: 323 ITASQSSLVSNSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTR 382
Query: 55 RVSKAALATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKI 114
S +L + + F + P + L +++++ + PSP +++ Q
Sbjct: 383 LPSPKSLVSAPTQILAQFPKQHQQSP--KQQLYQVQQQTQQQVAQPSPVSHQQQPQQ--- 437
Query: 115 GHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSK 147
L + + + SG K++T + SK
Sbjct: 438 ---SPLPPGIKPTIQIKQESGVKIITQQVQPSK 467
>gi|7661892 REST corepressor 1 [Homo sapiens]
Length = 482
Score = 32.3 bits (72), Expect = 0.65
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 2 AASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAA 60
A++ AA S+ + SP A T A+ AA SA AAAA AAA G ++ AA
Sbjct: 20 ASASAAAASAAASAACASP----AATAASGAAASSASAAAASAAAAPNNGQNKSLAAAA 74
>gi|223646113 Sp9 transcription factor homolog [Homo sapiens]
Length = 484
Score = 31.6 bits (70), Expect = 1.1
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 21 VLETAGTVAAMAATPSARAAAAVVAAAARTGSEA 54
+L +G AA AA +A AAAA AAA+ G EA
Sbjct: 444 ILHDSGVSAARAAAAAAAAAAAAAAAASAGGKEA 477
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 31.6 bits (70), Expect = 1.1
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 31 MAATPSARAAAAVVAAAARTGSEARVSKAALATKLLSLSGVFAVHKPKGPTSAELLNRLK 90
MA T A V AR GS ++A + + P P S+
Sbjct: 159 MATTRGPEAGLRVSGRGARAGSSTAPTRAQASPARPGFPP--CLRSPPCPASSRAFRSCL 216
Query: 91 EKLLA------EAGMPSPEWTKRKKQTLKIGHGG--TLDSAARGVLVVGIGSG 135
+ A AG PS +W + +KQ K G G L S R VL+ G+ SG
Sbjct: 217 SRAKAWDTAGQTAGQPSEKWEEGRKQWRKEGLLGRSALGSWTRWVLLRGLRSG 269
>gi|225735627 disco-interacting protein 2A isoform f [Homo sapiens]
Length = 798
Score = 31.6 bits (70), Expect = 1.1
Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 26/197 (13%)
Query: 27 TVAAMAATPSARAAAAVVAAAARTGSEARVSKAALATKLLSLSGVFAVHKPKGPTSAELL 86
T + AATP A A A+ A T V+ + +++K+ L + + +PK P E
Sbjct: 193 TAPSAAATPGAAATTALAGLEAHTHIGVPVN-SRVSSKIQQL--LNTLKRPKRPPLKEFF 249
Query: 87 NRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGS 146
E+LL E P P K + G+ S RG + +G S+L+
Sbjct: 250 VDDFEELL-EVQQPDPNQPKPE---------GSETSVLRG---EPLTAGVPRPPSLLATL 296
Query: 147 KRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIE---GILQKFTGNIMQVPPLYSAL 203
+R+ LD+TG+ Y K+ ++ +L K T L
Sbjct: 297 QRWGTTQPKSPCLTALDTTGKAVYTLTYGKLWSRSLKLAYTLLNKLTSK-------NEPL 349
Query: 204 KKDGQRLSTLMKRGEVV 220
K G R++ + + V
Sbjct: 350 LKPGDRVALVFPNSDPV 366
>gi|151301228 formin binding protein 3 [Homo sapiens]
Length = 930
Score = 31.6 bits (70), Expect = 1.1
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 1 MAASEAAVVSSPSLKTDTSPV--LETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSK 58
M +E + T T+PV E T++ MAA A AAAAVVAAAA + A +
Sbjct: 212 MIKAEESSKQEECTTTSTAPVPTTEIPTTMSTMAA---AEAAAAVVAAAAAAAAAAAAAN 268
Query: 59 AALAT 63
A +T
Sbjct: 269 ANAST 273
Score = 29.3 bits (64), Expect = 5.5
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 10 SSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAALAT 63
++P T+ + T A AA +A AAAA AAAA + S T
Sbjct: 229 TAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSGT 282
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 31.2 bits (69), Expect = 1.4
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%)
Query: 143 LSGSKRYTAIGELGKATDTLDSTGR-VTEEKP--YDKITQEDIEGILQKFTGNIMQVPPL 199
LS + YT + LG T ST + V EE P + K +E++ +++ PL
Sbjct: 11182 LSDAGEYTCVLRLGNKEKT--STAKLVVEELPVRFVKTLEEEV---------TVVKGQPL 11230
Query: 200 YSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGFYIRSLV 259
Y + + + +R K G++V KP R + I L + D + G Y ++
Sbjct: 11231 YLSCELNKERDVVWRKDGKIVVEKPGR-IVPGVIGLMRALTINDADDTD--AGTYTVTVE 11287
Query: 260 SDIGKELSSCANVLELTRTKQGPFTLEEHALPE 292
+ E SSC V+E+ R ++H P+
Sbjct: 11288 NANNLECSSCVKVVEVIRDWLVKPIRDQHVKPK 11320
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 31.2 bits (69), Expect = 1.4
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%)
Query: 143 LSGSKRYTAIGELGKATDTLDSTGR-VTEEKP--YDKITQEDIEGILQKFTGNIMQVPPL 199
LS + YT + LG T ST + V EE P + K +E++ +++ PL
Sbjct: 4877 LSDAGEYTCVLRLGNKEKT--STAKLVVEELPVRFVKTLEEEV---------TVVKGQPL 4925
Query: 200 YSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGFYIRSLV 259
Y + + + +R K G++V KP R + I L + D + G Y ++
Sbjct: 4926 YLSCELNKERDVVWRKDGKIVVEKPGR-IVPGVIGLMRALTINDADDTD--AGTYTVTVE 4982
Query: 260 SDIGKELSSCANVLELTRTKQGPFTLEEHALPE 292
+ E SSC V+E+ R ++H P+
Sbjct: 4983 NANNLECSSCVKVVEVIRDWLVKPIRDQHVKPK 5015
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 31.2 bits (69), Expect = 1.4
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%)
Query: 143 LSGSKRYTAIGELGKATDTLDSTGR-VTEEKP--YDKITQEDIEGILQKFTGNIMQVPPL 199
LS + YT + LG T ST + V EE P + K +E++ +++ PL
Sbjct: 4810 LSDAGEYTCVLRLGNKEKT--STAKLVVEELPVRFVKTLEEEV---------TVVKGQPL 4858
Query: 200 YSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGFYIRSLV 259
Y + + + +R K G++V KP R + I L + D + G Y ++
Sbjct: 4859 YLSCELNKERDVVWRKDGKIVVEKPGR-IVPGVIGLMRALTINDADDTD--AGTYTVTVE 4915
Query: 260 SDIGKELSSCANVLELTRTKQGPFTLEEHALPE 292
+ E SSC V+E+ R ++H P+
Sbjct: 4916 NANNLECSSCVKVVEVIRDWLVKPIRDQHVKPK 4948
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 31.2 bits (69), Expect = 1.4
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%)
Query: 143 LSGSKRYTAIGELGKATDTLDSTGR-VTEEKP--YDKITQEDIEGILQKFTGNIMQVPPL 199
LS + YT + LG T ST + V EE P + K +E++ +++ PL
Sbjct: 4685 LSDAGEYTCVLRLGNKEKT--STAKLVVEELPVRFVKTLEEEV---------TVVKGQPL 4733
Query: 200 YSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGFYIRSLV 259
Y + + + +R K G++V KP R + I L + D + G Y ++
Sbjct: 4734 YLSCELNKERDVVWRKDGKIVVEKPGR-IVPGVIGLMRALTINDADDTD--AGTYTVTVE 4790
Query: 260 SDIGKELSSCANVLELTRTKQGPFTLEEHALPE 292
+ E SSC V+E+ R ++H P+
Sbjct: 4791 NANNLECSSCVKVVEVIRDWLVKPIRDQHVKPK 4823
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 31.2 bits (69), Expect = 1.4
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 10 SSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVA-------AAARTGSEARVSKAALA 62
S PSL + +P G+ A A P A + A VA + A+ G+ A + +++
Sbjct: 342 SQPSLVSTVAP-----GSGLAPTAQPGAPSMAGTVAPGGVSGPSPAQLGAPALGGQQSVS 396
Query: 63 TKLLSLSGVFAVHKPKGPTSAELLNRLKEKL 93
KLL+ SGV + P S + +L L
Sbjct: 397 NKLLAWSGVLEWQEKPKPASVDANTKLTRSL 427
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 30.8 bits (68), Expect = 1.9
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 1 MAASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAA-----AAVVAAAARTGSEAR 55
+AA+ A + + T T+ ++ A A AA P+A AA AA AAA + +
Sbjct: 478 VAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQ 537
Query: 56 V-------SKAALATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPS 101
+ S AA+A + + V P A L + A+A P+
Sbjct: 538 IPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPA 590
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 30.8 bits (68), Expect = 1.9
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 1 MAASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAA-----AAVVAAAARTGSEAR 55
+AA+ A + + T T+ ++ A A AA P+A AA AA AAA + +
Sbjct: 887 VAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQ 946
Query: 56 V-------SKAALATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPS 101
+ S AA+A + + V P A L + A+A P+
Sbjct: 947 IPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPA 999
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 30.8 bits (68), Expect = 1.9
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 2 AASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSE------AR 55
A++ A V++S S SP+ + + + A+ P++ +AAA+ +++A + A
Sbjct: 1787 ASTLAPVLASTSAPVPASPLAPVSASASVSASVPASTSAAAITSSSAPASAPAPTPILAS 1846
Query: 56 VSKAALATKLLSLS 69
VS A T L S S
Sbjct: 1847 VSTPASVTILASAS 1860
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 30.4 bits (67), Expect = 2.5
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 14 LKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAAL 61
L+ D PVL A AA AA +A AAAAV AA + + V AAL
Sbjct: 81 LQVDLLPVLAAAQESAAAAAAAAA-AAAAVAAAPPAPAAASTVDTAAL 127
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 30.4 bits (67), Expect = 2.5
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 14 LKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAAL 61
L+ D PVL A AA AA +A AAAAV AA + + V AAL
Sbjct: 81 LQVDLLPVLAAAQESAAAAAAAAA-AAAAVAAAPPAPAAASTVDTAAL 127
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 30.4 bits (67), Expect = 2.5
Identities = 42/148 (28%), Positives = 55/148 (37%), Gaps = 20/148 (13%)
Query: 2 AASEAAVVSSPSLKTDTSPVLETAGTVAAMAAT---PSARAAAAVVAAAARTGSEARVSK 58
AASE S P ++ PV G++ A AA P A A A A A R E + +
Sbjct: 504 AASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAERAAPERKAER 563
Query: 59 AAL---ATKLLSLSGVFA-----VHKPKGPTSAEL-LNRLKEKLLAEA------GMPSPE 103
K S+S A V +P S L L R +EA G+P P+
Sbjct: 564 GGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARSGPVWRSEAALDDLQGLPEPQ 623
Query: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVG 131
K + K+ G DS R G
Sbjct: 624 HAKPGPR--KLAERGPQDSGDRAASPAG 649
>gi|47419907 T-box 3 protein isoform 2 [Homo sapiens]
Length = 743
Score = 30.0 bits (66), Expect = 3.2
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 10 SSPSLKTDTSPVLETAGTVAAMAATPS----ARAAAAVVAAAARTGSEARVSKAALATKL 65
S P D S +L TA A AA P A AA+ + A +GSE + L++
Sbjct: 644 SIPVPVPDGSSLLTTALPSMAAAAGPLDGKVAALAASPASVAVDSGSELNSRSSTLSSSS 703
Query: 66 LSLSGVFAVHKPKGPTSAELLNRLKEKLLAE 96
+SLS K + + + RL L A+
Sbjct: 704 MSLSPKLCAEKEAATSELQSIQRLVSGLEAK 734
>gi|47419905 T-box 3 protein isoform 1 [Homo sapiens]
Length = 723
Score = 30.0 bits (66), Expect = 3.2
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 10 SSPSLKTDTSPVLETAGTVAAMAATPS----ARAAAAVVAAAARTGSEARVSKAALATKL 65
S P D S +L TA A AA P A AA+ + A +GSE + L++
Sbjct: 624 SIPVPVPDGSSLLTTALPSMAAAAGPLDGKVAALAASPASVAVDSGSELNSRSSTLSSSS 683
Query: 66 LSLSGVFAVHKPKGPTSAELLNRLKEKLLAE 96
+SLS K + + + RL L A+
Sbjct: 684 MSLSPKLCAEKEAATSELQSIQRLVSGLEAK 714
>gi|115511046 zinc finger protein 258 [Homo sapiens]
Length = 1325
Score = 30.0 bits (66), Expect = 3.2
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 1 MAASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAA 47
++ ++ AV PS +TDT+PV+ + ++A + AT S +V+ A
Sbjct: 607 ISKAKTAVTELPSARTDTTPVITSVMSLAKIPATLSTGNTNSVLKGA 653
>gi|194248057 growth associated protein 43 isoform 1 [Homo sapiens]
Length = 274
Score = 30.0 bits (66), Expect = 3.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 2 AASEAAVVSSPSLKTDTSPVLET-------AGTVAAMAATPSARAAAAVVAAAART 50
+A++A+ +SPS K + +P E A AA A TP+A AAA A T
Sbjct: 178 SATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAATTPAAEDAAAKATAQPPT 233
>gi|4503911 growth associated protein 43 isoform 2 [Homo sapiens]
Length = 238
Score = 30.0 bits (66), Expect = 3.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 2 AASEAAVVSSPSLKTDTSPVLET-------AGTVAAMAATPSARAAAAVVAAAART 50
+A++A+ +SPS K + +P E A AA A TP+A AAA A T
Sbjct: 142 SATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAATTPAAEDAAAKATAQPPT 197
>gi|222446620 hypothetical protein LOC342346 [Homo sapiens]
Length = 1141
Score = 29.6 bits (65), Expect = 4.2
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 27 TVAAMAATPSARAAAAVVAAAARTGSEARVSKAALATKLLSLSGVFAVHKPKG 79
T AA+AA +A AAA +AA A+ K A ATK+ +++ A P G
Sbjct: 566 TTAAIAAAAAAAYAAATSSAAQAAKVAAKFVKDAPATKMAAIATDTAAAGPLG 618
Score = 28.9 bits (63), Expect = 7.2
Identities = 20/64 (31%), Positives = 27/64 (42%)
Query: 18 TSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAALATKLLSLSGVFAVHKP 77
T+ + A A AAT SA AA V A + +++ A T GVFA
Sbjct: 566 TTAAIAAAAAAAYAAATSSAAQAAKVAAKFVKDAPATKMAAIATDTAAAGPLGVFADVLG 625
Query: 78 KGPT 81
GP+
Sbjct: 626 AGPS 629
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,683,719
Number of Sequences: 37866
Number of extensions: 540886
Number of successful extensions: 1910
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1737
Number of HSP's gapped (non-prelim): 154
length of query: 349
length of database: 18,247,518
effective HSP length: 103
effective length of query: 246
effective length of database: 14,347,320
effective search space: 3529440720
effective search space used: 3529440720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.