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Search of human proteins with 209529726
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens]
(489 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens] 973 0.0
gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens] 953 0.0
gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens] 295 8e-80
gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens] 275 9e-74
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 70 3e-12
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 70 4e-12
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 70 4e-12
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 70 4e-12
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 70 6e-12
gi|4557293 autoimmune regulator isoform 2 [Homo sapiens] 62 1e-09
gi|75677357 PHD finger protein 12 isoform 1 [Homo sapiens] 61 3e-09
gi|30842829 PHD finger protein 12 isoform 2 [Homo sapiens] 61 3e-09
gi|4557291 autoimmune regulator isoform 1 [Homo sapiens] 60 4e-09
gi|38788260 bromodomain PHD finger transcription factor isoform ... 59 1e-08
gi|38788274 bromodomain PHD finger transcription factor isoform ... 59 1e-08
gi|47419911 transcriptional intermediary factor 1 alpha isoform ... 59 1e-08
gi|47419909 transcriptional intermediary factor 1 alpha isoform ... 59 1e-08
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 55 1e-07
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 55 1e-07
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 53 7e-07
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 52 9e-07
gi|209977097 tripartite motif-containing 66 [Homo sapiens] 52 1e-06
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 52 1e-06
gi|32967605 bromodomain adjacent to zinc finger domain, 1A isofo... 52 2e-06
gi|32967603 bromodomain adjacent to zinc finger domain, 1A isofo... 52 2e-06
gi|50345997 E1A binding protein p300 [Homo sapiens] 51 2e-06
gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [H... 51 3e-06
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 51 3e-06
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 49 8e-06
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 49 8e-06
>gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens]
Length = 489
Score = 973 bits (2516), Expect = 0.0
Identities = 489/489 (100%), Positives = 489/489 (100%)
Query: 1 MELQSRPEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGTITAVPVTGPQVSSLQR 60
MELQSRPEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGTITAVPVTGPQVSSLQR
Sbjct: 1 MELQSRPEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGTITAVPVTGPQVSSLQR 60
Query: 61 LAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVVSVKNPSPALPTANNTV 120
LAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVVSVKNPSPALPTANNTV
Sbjct: 61 LAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVVSVKNPSPALPTANNTV 120
Query: 121 SHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAAAMAPSTAVSVVSDSIKVQP 180
SHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAAAMAPSTAVSVVSDSIKVQP
Sbjct: 121 SHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAAAMAPSTAVSVVSDSIKVQP 180
Query: 181 LLISADNKVIIIQPQVQTQPESTAESRPPTEEPSQGAQATKKKKEDRPPTQENPEKIAFM 240
LLISADNKVIIIQPQVQTQPESTAESRPPTEEPSQGAQATKKKKEDRPPTQENPEKIAFM
Sbjct: 181 LLISADNKVIIIQPQVQTQPESTAESRPPTEEPSQGAQATKKKKEDRPPTQENPEKIAFM 240
Query: 241 VALGLVTTEHLEEIQSKRQERKRRSTANPAYSGLLETERKRLASNYLNNPLFLTARANED 300
VALGLVTTEHLEEIQSKRQERKRRSTANPAYSGLLETERKRLASNYLNNPLFLTARANED
Sbjct: 241 VALGLVTTEHLEEIQSKRQERKRRSTANPAYSGLLETERKRLASNYLNNPLFLTARANED 300
Query: 301 PCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALK 360
PCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALK
Sbjct: 301 PCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALK 360
Query: 361 KDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQNEHQQLEERDRRLASAVQKCL 420
KDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQNEHQQLEERDRRLASAVQKCL
Sbjct: 361 KDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQNEHQQLEERDRRLASAVQKCL 420
Query: 421 ELKTSLLARQRGTQSSLDRLRALLRLIQGEQLLQVTMTTTSPAPLLAGPWTKPSVAATHP 480
ELKTSLLARQRGTQSSLDRLRALLRLIQGEQLLQVTMTTTSPAPLLAGPWTKPSVAATHP
Sbjct: 421 ELKTSLLARQRGTQSSLDRLRALLRLIQGEQLLQVTMTTTSPAPLLAGPWTKPSVAATHP 480
Query: 481 TVQHPQGHN 489
TVQHPQGHN
Sbjct: 481 TVQHPQGHN 489
>gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens]
Length = 531
Score = 953 bits (2463), Expect = 0.0
Identities = 489/531 (92%), Positives = 489/531 (92%), Gaps = 42/531 (7%)
Query: 1 MELQSRPEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGTITAVPVTGPQVSSLQR 60
MELQSRPEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGTITAVPVTGPQVSSLQR
Sbjct: 1 MELQSRPEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGTITAVPVTGPQVSSLQR 60
Query: 61 LAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVVSVKNPSPALPTANNTV 120
LAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVVSVKNPSPALPTANNTV
Sbjct: 61 LAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVVSVKNPSPALPTANNTV 120
Query: 121 SHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAAAMAPSTAVSVVSDSIKVQP 180
SHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAAAMAPSTAVSVVSDSIKVQP
Sbjct: 121 SHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAAAMAPSTAVSVVSDSIKVQP 180
Query: 181 LLISADNK------------------------------------------VIIIQPQVQT 198
LLISADNK VIIIQPQVQT
Sbjct: 181 LLISADNKPPPRLLSSPHPATHHCPLHPSSLPLTPPSPSLSPSPLHGIFQVIIIQPQVQT 240
Query: 199 QPESTAESRPPTEEPSQGAQATKKKKEDRPPTQENPEKIAFMVALGLVTTEHLEEIQSKR 258
QPESTAESRPPTEEPSQGAQATKKKKEDRPPTQENPEKIAFMVALGLVTTEHLEEIQSKR
Sbjct: 241 QPESTAESRPPTEEPSQGAQATKKKKEDRPPTQENPEKIAFMVALGLVTTEHLEEIQSKR 300
Query: 259 QERKRRSTANPAYSGLLETERKRLASNYLNNPLFLTARANEDPCWKNEITHDEHCAACKR 318
QERKRRSTANPAYSGLLETERKRLASNYLNNPLFLTARANEDPCWKNEITHDEHCAACKR
Sbjct: 301 QERKRRSTANPAYSGLLETERKRLASNYLNNPLFLTARANEDPCWKNEITHDEHCAACKR 360
Query: 319 GANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKKDEGVPWTGMLAIVHSYV 378
GANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKKDEGVPWTGMLAIVHSYV
Sbjct: 361 GANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKKDEGVPWTGMLAIVHSYV 420
Query: 379 THKTVKEEEKQKLLQRGSELQNEHQQLEERDRRLASAVQKCLELKTSLLARQRGTQSSLD 438
THKTVKEEEKQKLLQRGSELQNEHQQLEERDRRLASAVQKCLELKTSLLARQRGTQSSLD
Sbjct: 421 THKTVKEEEKQKLLQRGSELQNEHQQLEERDRRLASAVQKCLELKTSLLARQRGTQSSLD 480
Query: 439 RLRALLRLIQGEQLLQVTMTTTSPAPLLAGPWTKPSVAATHPTVQHPQGHN 489
RLRALLRLIQGEQLLQVTMTTTSPAPLLAGPWTKPSVAATHPTVQHPQGHN
Sbjct: 481 RLRALLRLIQGEQLLQVTMTTTSPAPLLAGPWTKPSVAATHPTVQHPQGHN 531
>gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens]
Length = 634
Score = 295 bits (754), Expect = 8e-80
Identities = 171/445 (38%), Positives = 253/445 (56%), Gaps = 39/445 (8%)
Query: 49 PVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVVSVKN 108
P+ PQ RL + LPQVRPK + +++P+AP P Q+ +++
Sbjct: 213 PIKVPQFIPPPRLTPR-PNFLPQVRPKPVAQNNIPIAPAPPPMLAAPQLIQRPVMLTKFT 271
Query: 109 PSPALPTANNTVSHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAAAMAPSTA 168
P+ LPT+ N++ V Q +A+ +A S I+ +P A P T
Sbjct: 272 PT-TLPTSQNSIHPVRVVNGQTATIAKTFPMAQLTS-------IVIATPGTRLA-GPQT- 321
Query: 169 VSVVSDSIKVQPLLISADNKVIIIQPQVQTQPESTAESRPPTEEPSQGAQATKKKKEDRP 228
V + +P ++ Q T +S T+E ++ +P
Sbjct: 322 --------------------VQLSKPSLEKQ---TVKSHTETDEKQTESRTITPPAAPKP 358
Query: 229 PTQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYSG-LLETERKRLASNYL 287
+ENP+K+AFMV+LGLVT +HLEEIQSKRQERKRR+TANP YSG + E ERK+ A YL
Sbjct: 359 KREENPQKLAFMVSLGLVTHDHLEEIQSKRQERKRRTTANPVYSGAVFEPERKKSAVTYL 418
Query: 288 NNPLF--LTARANEDPCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAP 345
N+ + RANE+ K +I H++ C+ C++ L C TC YHL CL+PPLKT P
Sbjct: 419 NSTMHPGTRKRANEEHWPKGDI-HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIP 477
Query: 346 KGVWVCPRCQQKALKKDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQNEHQQL 405
KG+W+CPRCQ + LKK+E +PW G LAIVHSY+ +K KEEEKQKLL+ S+L+ E +QL
Sbjct: 478 KGMWICPRCQDQMLKKEEAIPWPGTLAIVHSYIAYKAAKEEEKQKLLKWSSDLKQEREQL 537
Query: 406 EERDRRLASAVQKCLELKTSLLARQRGTQSSLDRLRALLRLIQGEQLLQVTMTTTSPAPL 465
E++ ++L++++ KC+E+K ++LARQ+ SSL++++ L+RLI G L + + + +
Sbjct: 538 EQKVKQLSNSISKCMEMKNTILARQKEMHSSLEKVKQLIRLIHGIDLSKPVDSEATVGAI 597
Query: 466 LAGP-WTKPSVAATHPTVQHPQGHN 489
GP T P+ AAT P +
Sbjct: 598 SNGPDCTPPANAATSTPAPSPSSQS 622
Score = 47.4 bits (111), Expect = 3e-05
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 41/208 (19%)
Query: 1 MELQSRPEALAVELARHQ-----------NGDLKKQLHERQPRIAALSDKQALGTITAVP 49
MELQ+ EAL VE+ HQ N DLKKQLHE Q +I ALS+KQ
Sbjct: 1 MELQTLQEALKVEIQVHQKLVAQMKQDPQNADLKKQLHELQAKITALSEKQK-------- 52
Query: 50 VTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVVSVKN- 108
V L++ ++ Q +P LP + + + +Q P Q +
Sbjct: 53 ---RVVEQLRK-----NLIVKQEQPDKFQIQPLPQSENKLQTAQQQPLQQLQQQQQYHHH 104
Query: 109 -------PSPALPTANNTVSHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAA 161
SP L + TV+ ++ L AA A+ +S ++ P+ A
Sbjct: 105 HAQQSAAASPNLTASQKTVTTASMITTKTLPLVLKAATATMPAS------VVGQRPTIAM 158
Query: 162 AMAPSTAVSVVSDSIKVQPLLISADNKV 189
A ++ +V+S ++ P+ + +KV
Sbjct: 159 VTAINSQKAVLSTDVQNTPVNLQTSSKV 186
>gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens]
Length = 680
Score = 275 bits (702), Expect = 9e-74
Identities = 170/504 (33%), Positives = 252/504 (50%), Gaps = 88/504 (17%)
Query: 41 ALGTITAVPVTGPQVSSLQRLAGQGAAV-----LPQVRPKTLIPDSLPVAPGRDRPPKQP 95
A T+T V T PQ + + LPQVRPK + +++P+AP P
Sbjct: 198 AKNTVTLVQATPPQPIKVPQFIPPPRLTPRPNFLPQVRPKPVAQNNIPIAPAPPPMLAAP 257
Query: 96 PTFQKATVVSVKNPSPALPTANNTVSHVPAPGSQPQALAEPAALASPLSSAGVAYAIIST 155
Q+ +++ P+ LPT+ N++ V Q +A+ +A S I+
Sbjct: 258 QLIQRPVMLTKFTPT-TLPTSQNSIHPVRVVNGQTATIAKTFPMAQLTS-------IVIA 309
Query: 156 SPSNAAAMAPSTAVSVVSDSIKVQPLLISADNKVIIIQPQVQTQPESTAESRPPTEEPSQ 215
+P A P T V + +P ++ Q T +S T+E
Sbjct: 310 TPGTRLA-GPQT---------------------VQLSKPSLEKQ---TVKSHTETDEKQT 344
Query: 216 GAQATKKKKEDRPPTQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYSG-L 274
++ +P +ENP+K+AFMV+LGLVT +HLEEIQSKRQERKRR+TANP YSG +
Sbjct: 345 ESRTITPPAAPKPKREENPQKLAFMVSLGLVTHDHLEEIQSKRQERKRRTTANPVYSGAV 404
Query: 275 LETERKRLASNYLNNPLFLTARANEDPCWKNEIT-------------------------- 308
E ERK+ A YLN+ + R P N +
Sbjct: 405 FEPERKKSAVTYLNSTMHPGTRKRGRPPKYNAVLGFGALTPTSPQSSHPDSPENEKTETT 464
Query: 309 ----------------------HDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPK 346
H++ C+ C++ L C TC YHL CL+PPLKT PK
Sbjct: 465 FTFPAPVQPVSLPSPTSTDGDIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPK 524
Query: 347 GVWVCPRCQQKALKKDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQNEHQQLE 406
G+W+CPRCQ + LKK+E +PW G LAIVHSY+ +K KEEEKQKLL+ S+L+ E +QLE
Sbjct: 525 GMWICPRCQDQMLKKEEAIPWPGTLAIVHSYIAYKAAKEEEKQKLLKWSSDLKQEREQLE 584
Query: 407 ERDRRLASAVQKCLELKTSLLARQRGTQSSLDRLRALLRLIQGEQLLQVTMTTTSPAPLL 466
++ ++L++++ KC+E+K ++LARQ+ SSL++++ L+RLI G L + + + +
Sbjct: 585 QKVKQLSNSISKCMEMKNTILARQKEMHSSLEKVKQLIRLIHGIDLSKPVDSEATVGAIS 644
Query: 467 AGP-WTKPSVAATHPTVQHPQGHN 489
GP T P+ AAT P +
Sbjct: 645 NGPDCTPPANAATSTPAPSPSSQS 668
Score = 47.4 bits (111), Expect = 3e-05
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 41/208 (19%)
Query: 1 MELQSRPEALAVELARHQ-----------NGDLKKQLHERQPRIAALSDKQALGTITAVP 49
MELQ+ EAL VE+ HQ N DLKKQLHE Q +I ALS+KQ
Sbjct: 1 MELQTLQEALKVEIQVHQKLVAQMKQDPQNADLKKQLHELQAKITALSEKQK-------- 52
Query: 50 VTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVVSVKN- 108
V L++ ++ Q +P LP + + + +Q P Q +
Sbjct: 53 ---RVVEQLRK-----NLIVKQEQPDKFQIQPLPQSENKLQTAQQQPLQQLQQQQQYHHH 104
Query: 109 -------PSPALPTANNTVSHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAA 161
SP L + TV+ ++ L AA A+ +S ++ P+ A
Sbjct: 105 HAQQSAAASPNLTASQKTVTTASMITTKTLPLVLKAATATMPAS------VVGQRPTIAM 158
Query: 162 AMAPSTAVSVVSDSIKVQPLLISADNKV 189
A ++ +V+S ++ P+ + +KV
Sbjct: 159 VTAINSQKAVLSTDVQNTPVNLQTSSKV 186
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 70.5 bits (171), Expect = 3e-12
Identities = 30/62 (48%), Positives = 33/62 (53%)
Query: 299 EDPCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKA 358
E C + E H E C CK G L C CP +YHL CL PPL P G W+CPRC
Sbjct: 405 EGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPP 464
Query: 359 LK 360
LK
Sbjct: 465 LK 466
Score = 69.7 bits (169), Expect = 6e-12
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 306 EITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKKDEGV 365
E H ++C C++G + C TCP AYHL CL+P L+ AP+G W CP C++ EG+
Sbjct: 339 ETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEK------EGI 392
Query: 366 PW 367
W
Sbjct: 393 QW 394
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 70.1 bits (170), Expect = 4e-12
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 295 ARANEDPCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRC 354
A A E+ E H ++C C++G + C TCP AYHL CL+P L AP+G W CP C
Sbjct: 364 AVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 423
Query: 355 QQKALKKDEGVPW 367
++ EGV W
Sbjct: 424 EK------EGVQW 430
Score = 64.3 bits (155), Expect = 2e-10
Identities = 26/57 (45%), Positives = 31/57 (54%)
Query: 304 KNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALK 360
+ E H E+C CK G L C C +YH+ CL PPL P G W+CPRC LK
Sbjct: 450 EEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLK 506
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 70.1 bits (170), Expect = 4e-12
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 295 ARANEDPCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRC 354
A A E+ E H ++C C++G + C TCP AYHL CL+P L AP+G W CP C
Sbjct: 364 AVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 423
Query: 355 QQKALKKDEGVPW 367
++ EGV W
Sbjct: 424 EK------EGVQW 430
Score = 64.3 bits (155), Expect = 2e-10
Identities = 26/57 (45%), Positives = 31/57 (54%)
Query: 304 KNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALK 360
+ E H E+C CK G L C C +YH+ CL PPL P G W+CPRC LK
Sbjct: 450 EEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLK 506
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 70.1 bits (170), Expect = 4e-12
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 295 ARANEDPCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRC 354
A A E+ E H ++C C++G + C TCP AYHL CL+P L AP+G W CP C
Sbjct: 423 AVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 482
Query: 355 QQKALKKDEGVPW 367
++ EGV W
Sbjct: 483 EK------EGVQW 489
Score = 64.3 bits (155), Expect = 2e-10
Identities = 26/57 (45%), Positives = 31/57 (54%)
Query: 304 KNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALK 360
+ E H E+C CK G L C C +YH+ CL PPL P G W+CPRC LK
Sbjct: 509 EEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLK 565
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 69.7 bits (169), Expect = 6e-12
Identities = 28/52 (53%), Positives = 31/52 (59%)
Query: 309 HDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALK 360
H E C CK G L C TCP +YH+ CL PPL P G W+CPRC ALK
Sbjct: 448 HMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 499
Score = 68.2 bits (165), Expect = 2e-11
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 306 EITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKKDEGV 365
E H ++C C++G + C TCP AYH+ CL+P ++ AP+G W CP C++ EG+
Sbjct: 366 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK------EGI 419
Query: 366 PW 367
W
Sbjct: 420 QW 421
Score = 35.8 bits (81), Expect = 0.091
Identities = 47/188 (25%), Positives = 70/188 (37%), Gaps = 33/188 (17%)
Query: 105 SVKNPSPALPTANNTVSHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAAAMA 164
S K P+P+ P + P P ++ E +L S G + A
Sbjct: 1537 SPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEG---------EKEVKSTA 1587
Query: 165 PSTAVSVVSDSIKVQPLLISADNKVIIIQPQVQTQPESTAESRPPTEEPSQ----GAQAT 220
P TA+ P S D KV++ P+ + + E AE + TEEP + GA
Sbjct: 1588 PETAIECTQ-----APAPASEDEKVVVEPPEGEEKVEK-AEVKERTEEPMETEPKGAADV 1641
Query: 221 KKKK------------EDRPPTQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTAN 268
+K + ED+ +E EK M+ G + +E Q K K+R N
Sbjct: 1642 EKVEEKSAIDLTPIVVEDKEEKKEEEEKKEVMLQNGETPKDLNDEKQKK--NIKQRFMFN 1699
Query: 269 PAYSGLLE 276
A G E
Sbjct: 1700 IADGGFTE 1707
>gi|4557293 autoimmune regulator isoform 2 [Homo sapiens]
Length = 348
Score = 62.0 bits (149), Expect = 1e-09
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 302 CWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKK 361
C KNE + CA C+ G L C CP A+HL+CL PPL+ P G W C C Q +++
Sbjct: 95 CQKNE----DECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
>gi|75677357 PHD finger protein 12 isoform 1 [Homo sapiens]
Length = 1004
Score = 60.8 bits (146), Expect = 3e-09
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 273 GLLETERKRLASNYLNNPLFLTARANEDPCWKNEITHDEHCAACKRGANLQPCGTCPGAY 332
GL+E + LA + + + ++P T+ + C +CK G +L C CP A+
Sbjct: 19 GLMEQIQALLAPPKTDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGGDLLCCDHCPAAF 78
Query: 333 HLSCLEPPL--KTAPKGVWVCPRCQQKALKKDE 363
HL C PPL + P G W+C RC + K+++
Sbjct: 79 HLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQ 111
Score = 50.8 bits (120), Expect = 3e-06
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 313 CAACKRGANLQP---CGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKKDEGVPWTG 369
C C R + P C CP +H+ CLEPPL P G W+CP + + + + +
Sbjct: 274 CFTCNRSCRVAPLIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVVLNQKNMTLSN 333
Query: 370 MLAIVHSY---VTHKTVKEEEKQKLLQRGSELQNEHQQLEERDRRLASAVQKCLELKTSL 426
+ + V+ VK + ++ ++ + Q ++ R ++ A++ + L
Sbjct: 334 RCQVFDRFQDTVSQHVVKVDFLNRIHKKHPPNRRVLQSVKRRSLKVPDAIKSQYQFPPPL 393
Query: 427 LA 428
+A
Sbjct: 394 IA 395
>gi|30842829 PHD finger protein 12 isoform 2 [Homo sapiens]
Length = 704
Score = 60.8 bits (146), Expect = 3e-09
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 273 GLLETERKRLASNYLNNPLFLTARANEDPCWKNEITHDEHCAACKRGANLQPCGTCPGAY 332
GL+E + LA + + + ++P T+ + C +CK G +L C CP A+
Sbjct: 19 GLMEQIQALLAPPKTDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGGDLLCCDHCPAAF 78
Query: 333 HLSCLEPPL--KTAPKGVWVCPRCQQKALKKDE 363
HL C PPL + P G W+C RC + K+++
Sbjct: 79 HLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQ 111
Score = 50.8 bits (120), Expect = 3e-06
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 313 CAACKRGANLQP---CGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKKDEGVPWTG 369
C C R + P C CP +H+ CLEPPL P G W+CP + + + + +
Sbjct: 274 CFTCNRSCRVAPLIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVVLNQKNMTLSN 333
Query: 370 MLAIVHSY---VTHKTVKEEEKQKLLQRGSELQNEHQQLEERDRRLASAVQKCLELKTSL 426
+ + V+ VK + ++ ++ + Q ++ R ++ A++ + L
Sbjct: 334 RCQVFDRFQDTVSQHVVKVDFLNRIHKKHPPNRRVLQSVKRRSLKVPDAIKSQYQFPPPL 393
Query: 427 LA 428
+A
Sbjct: 394 IA 395
>gi|4557291 autoimmune regulator isoform 1 [Homo sapiens]
Length = 545
Score = 60.1 bits (144), Expect = 4e-09
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 309 HDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKK 361
+++ CA C+ G L C CP A+HL+CL PPL+ P G W C C Q +++
Sbjct: 295 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 347
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 58.5 bits (140), Expect = 1e-08
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 278 ERKRLASNYLNNPLFLTARANEDPCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCL 337
E K +L + T A E+ + I +D+HC C + +L C TC YHL C+
Sbjct: 358 ENKIKVLQFLVDQFLTTNIAREELMSEGVIQYDDHCRVCHKLGDLLCCETCSAVYHLECV 417
Query: 338 EPPLKTAPKGVWVCPRC 354
+PPL+ P+ W C C
Sbjct: 418 KPPLEEVPEDEWQCEVC 434
Score = 37.7 bits (86), Expect = 0.024
Identities = 63/242 (26%), Positives = 91/242 (37%), Gaps = 40/242 (16%)
Query: 48 VPVTGPQVSSLQRLAG--QGAAVLPQVRPKT-----LIPDSLPVAPGRDRPPKQPP---- 96
V +T Q++ L + G QG V+ Q + +T LIP + V PG + Q
Sbjct: 2271 VKLTMAQLTQLTQGHGGNQGLTVVIQGQGQTTGQLQLIPQGVTVLPGPGQQLMQAAMPNG 2330
Query: 97 TFQKATVVSVKNPSPALPTANNTVSHVPA-PGSQPQALAEPAALASPLSSAGVAYAIIST 155
T Q+ + + T TVS A G Q Q+ P + A + S
Sbjct: 2331 TVQRFLFTPLATTATTASTTTTTVSTTAAGTGEQRQSKLSPQMQVHQDKTLPPAQSS-SV 2389
Query: 156 SPSNAAAMAPSTAVSVVSDSIKVQPLLISADNKVIIIQPQVQTQPE----STAESRPPTE 211
P+ A P TA + QP + QP+VQTQPE +T S P+E
Sbjct: 2390 GPAEAQ---PQTAQPSAQPQPQTQPQSPA--------QPEVQTQPEVQTQTTVSSHVPSE 2438
Query: 212 EPSQGAQATKKKKEDRPPTQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAY 271
AQ++K + + Q N V + +QS Q R R ST +
Sbjct: 2439 AQPTHAQSSKPQVAAQSQPQSN------------VQGQSPVRVQSPSQTRIRPSTPSQLS 2486
Query: 272 SG 273
G
Sbjct: 2487 PG 2488
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 58.5 bits (140), Expect = 1e-08
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 278 ERKRLASNYLNNPLFLTARANEDPCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCL 337
E K +L + T A E+ + I +D+HC C + +L C TC YHL C+
Sbjct: 358 ENKIKVLQFLVDQFLTTNIAREELMSEGVIQYDDHCRVCHKLGDLLCCETCSAVYHLECV 417
Query: 338 EPPLKTAPKGVWVCPRC 354
+PPL+ P+ W C C
Sbjct: 418 KPPLEEVPEDEWQCEVC 434
Score = 37.7 bits (86), Expect = 0.024
Identities = 63/242 (26%), Positives = 91/242 (37%), Gaps = 40/242 (16%)
Query: 48 VPVTGPQVSSLQRLAG--QGAAVLPQVRPKT-----LIPDSLPVAPGRDRPPKQPP---- 96
V +T Q++ L + G QG V+ Q + +T LIP + V PG + Q
Sbjct: 2145 VKLTMAQLTQLTQGHGGNQGLTVVIQGQGQTTGQLQLIPQGVTVLPGPGQQLMQAAMPNG 2204
Query: 97 TFQKATVVSVKNPSPALPTANNTVSHVPA-PGSQPQALAEPAALASPLSSAGVAYAIIST 155
T Q+ + + T TVS A G Q Q+ P + A + S
Sbjct: 2205 TVQRFLFTPLATTATTASTTTTTVSTTAAGTGEQRQSKLSPQMQVHQDKTLPPAQSS-SV 2263
Query: 156 SPSNAAAMAPSTAVSVVSDSIKVQPLLISADNKVIIIQPQVQTQPE----STAESRPPTE 211
P+ A P TA + QP + QP+VQTQPE +T S P+E
Sbjct: 2264 GPAEAQ---PQTAQPSAQPQPQTQPQSPA--------QPEVQTQPEVQTQTTVSSHVPSE 2312
Query: 212 EPSQGAQATKKKKEDRPPTQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAY 271
AQ++K + + Q N V + +QS Q R R ST +
Sbjct: 2313 AQPTHAQSSKPQVAAQSQPQSN------------VQGQSPVRVQSPSQTRIRPSTPSQLS 2360
Query: 272 SG 273
G
Sbjct: 2361 PG 2362
Score = 30.0 bits (66), Expect = 5.0
Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 16/177 (9%)
Query: 30 QPRIAALSDKQALGTITAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPV---AP 86
QP + + Q T+++ + Q + Q Q AA Q +P++ + PV +P
Sbjct: 2290 QPEVQTQPEVQTQTTVSSHVPSEAQPTHAQSSKPQVAA---QSQPQSNVQGQSPVRVQSP 2346
Query: 87 GRDR-----PPKQPPTFQKATVVSVKNPSPALPTANNTVSHVPAPGSQPQALAEPAALAS 141
+ R P + P Q + P P P + + P SQPQ +
Sbjct: 2347 SQTRIRPSTPSQLSPGQQSQVQTTTSQPIPIQPHTSLQIPSQGQPQSQPQVQSS----TQ 2402
Query: 142 PLSSAGVAYAIISTSPSNAAAMAPSTAVSVVS-DSIKVQPLLISADNKVIIIQPQVQ 197
LSS + +SPS V++ ++ Q ++S ++ Q Q Q
Sbjct: 2403 TLSSGQTLNQVTVSSPSRPQLQIQQPQPQVIAVPQLQQQVQVLSQIQSQVVAQIQAQ 2459
>gi|47419911 transcriptional intermediary factor 1 alpha isoform a
[Homo sapiens]
Length = 1050
Score = 58.5 bits (140), Expect = 1e-08
Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 46/254 (18%)
Query: 114 PTANNTV----SHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAAAMAPSTAV 169
P +N TV S VP+PG LA P++ V I S S S+ + S +
Sbjct: 652 PPSNRTVQSPNSSVPSPG-----------LAGPVTMTSVHPPIRSPSASSVGSRGSSGSS 700
Query: 170 SVVSDSIKVQPLLISADNKVIIIQPQVQTQP-ESTAESRPPTEEPSQGAQATKKK--KED 226
S +P + +KV P V +P E+ P E K++ +E
Sbjct: 701 S--------KPAGADSTHKV----PVVMLEPIRIKQENSGPPENYDFPVVIVKQESDEES 748
Query: 227 RPPTQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYSGLLETERKRLASNY 286
RP P I + L + EE R + GL + S +
Sbjct: 749 RPQNANYPRSILTSLLLNSSQSSTSEETVL----RSDAPDSTGDQPGLHQDNSSNGKSEW 804
Query: 287 LN----NPLFL-TARANEDPCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPL 341
L+ +PL + R +DP +++ CA C+ G L C CP +HLSC P L
Sbjct: 805 LDPSQKSPLHVGETRKEDDP-------NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTL 857
Query: 342 KTAPKGVWVCPRCQ 355
P G W+C C+
Sbjct: 858 TNFPSGEWICTFCR 871
>gi|47419909 transcriptional intermediary factor 1 alpha isoform b
[Homo sapiens]
Length = 1016
Score = 58.5 bits (140), Expect = 1e-08
Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 46/254 (18%)
Query: 114 PTANNTV----SHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAAAMAPSTAV 169
P +N TV S VP+PG LA P++ V I S S S+ + S +
Sbjct: 618 PPSNRTVQSPNSSVPSPG-----------LAGPVTMTSVHPPIRSPSASSVGSRGSSGSS 666
Query: 170 SVVSDSIKVQPLLISADNKVIIIQPQVQTQP-ESTAESRPPTEEPSQGAQATKKK--KED 226
S +P + +KV P V +P E+ P E K++ +E
Sbjct: 667 S--------KPAGADSTHKV----PVVMLEPIRIKQENSGPPENYDFPVVIVKQESDEES 714
Query: 227 RPPTQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYSGLLETERKRLASNY 286
RP P I + L + EE R + GL + S +
Sbjct: 715 RPQNANYPRSILTSLLLNSSQSSTSEETVL----RSDAPDSTGDQPGLHQDNSSNGKSEW 770
Query: 287 LN----NPLFL-TARANEDPCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPL 341
L+ +PL + R +DP +++ CA C+ G L C CP +HLSC P L
Sbjct: 771 LDPSQKSPLHVGETRKEDDP-------NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTL 823
Query: 342 KTAPKGVWVCPRCQ 355
P G W+C C+
Sbjct: 824 TNFPSGEWICTFCR 837
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 55.5 bits (132), Expect = 1e-07
Identities = 72/326 (22%), Positives = 130/326 (39%), Gaps = 46/326 (14%)
Query: 44 TITAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATV 103
TI T +++ R + ++ P P++LP P D PP Q + A
Sbjct: 639 TINPTSPTTATMANANRGPTSPSVTAIELIPSVTNPENLPSLP--DIPPIQ---LEDAGS 693
Query: 104 VSVKNPSPALPTANNTVSHVPAPGSQPQALAEPAALASPLS--SAGVAYAIISTSPSNAA 161
S+ N L + + SH+P QP + P+ S LS S+G++ + P + +
Sbjct: 694 SSLDN----LLSRYISGSHLPP---QPTSTMNPSPGPSALSPGSSGLSNSHTPVRPPSTS 746
Query: 162 AM------------APSTAVSVVSDSIKVQPLLISADNKVIIIQPQVQTQPESTAESRPP 209
+ A T++S SD +KV+ + D I + E T + R
Sbjct: 747 STGSRGSCGSSGRTAEKTSLSFKSDQVKVKQEPGTEDE---ICSFSGGVKQEKTEDGR-- 801
Query: 210 TEEPSQGAQATKKKKEDRPPTQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANP 269
+ + PP N + + AL + H++ + E ++S +
Sbjct: 802 ----RSACMLSSPESSLTPPLSTNLHLESELDALASLEN-HVKIEPADMNESCKQSGLSS 856
Query: 270 AYSGLLETERKRLASNYLNNPLFLTARANEDPCWKNEITHDEHCAACKRGANLQPCGTCP 329
+G + + + + +AR D K++ +++ CA C+ G +L C CP
Sbjct: 857 LVNG----------KSPIRSLMHRSARIGGDGNNKDDDPNEDWCAVCQNGGDLLCCEKCP 906
Query: 330 GAYHLSCLEPPLKTAPKGVWVCPRCQ 355
+HL+C P L + P G W+C C+
Sbjct: 907 KVFHLTCHVPTLLSFPSGDWICTFCR 932
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 55.5 bits (132), Expect = 1e-07
Identities = 72/326 (22%), Positives = 130/326 (39%), Gaps = 46/326 (14%)
Query: 44 TITAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATV 103
TI T +++ R + ++ P P++LP P D PP Q + A
Sbjct: 639 TINPTSPTTATMANANRGPTSPSVTAIELIPSVTNPENLPSLP--DIPPIQ---LEDAGS 693
Query: 104 VSVKNPSPALPTANNTVSHVPAPGSQPQALAEPAALASPLS--SAGVAYAIISTSPSNAA 161
S+ N L + + SH+P QP + P+ S LS S+G++ + P + +
Sbjct: 694 SSLDN----LLSRYISGSHLPP---QPTSTMNPSPGPSALSPGSSGLSNSHTPVRPPSTS 746
Query: 162 AM------------APSTAVSVVSDSIKVQPLLISADNKVIIIQPQVQTQPESTAESRPP 209
+ A T++S SD +KV+ + D I + E T + R
Sbjct: 747 STGSRGSCGSSGRTAEKTSLSFKSDQVKVKQEPGTEDE---ICSFSGGVKQEKTEDGR-- 801
Query: 210 TEEPSQGAQATKKKKEDRPPTQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANP 269
+ + PP N + + AL + H++ + E ++S +
Sbjct: 802 ----RSACMLSSPESSLTPPLSTNLHLESELDALASLEN-HVKIEPADMNESCKQSGLSS 856
Query: 270 AYSGLLETERKRLASNYLNNPLFLTARANEDPCWKNEITHDEHCAACKRGANLQPCGTCP 329
+G + + + + +AR D K++ +++ CA C+ G +L C CP
Sbjct: 857 LVNG----------KSPIRSLMHRSARIGGDGNNKDDDPNEDWCAVCQNGGDLLCCEKCP 906
Query: 330 GAYHLSCLEPPLKTAPKGVWVCPRCQ 355
+HL+C P L + P G W+C C+
Sbjct: 907 KVFHLTCHVPTLLSFPSGDWICTFCR 932
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 52.8 bits (125), Expect = 7e-07
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 16/175 (9%)
Query: 53 PQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVAP-GRDRPPKQPPTFQKATVVSVKNPSP 111
P ++ R G + RP TL P LP G R P PT + + V +PSP
Sbjct: 1325 PPLAPAPRPPSSGLPAVLNPRP-TLTPGRLPTPTLGTARAPMPTPTLVRPLLKLVHSPSP 1383
Query: 112 --------ALPTANNTVSHVPA----PGSQPQALAEPAALASPLSSAGVAYAIISTSPSN 159
A P ++ HVP+ P S P + + LASP+SS V+ + S+ P +
Sbjct: 1384 EVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLASPVSST-VSVPLSSSLPIS 1442
Query: 160 AAAMAPSTAVSVVSDSIKVQPLLISADNKVIIIQPQVQTQPESTAESRPPTEEPS 214
P+ A + ++ I PL +SA ++ P A PP+ PS
Sbjct: 1443 VPTTLPAPASAPLTIPISA-PLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPS 1496
Score = 40.4 bits (93), Expect = 0.004
Identities = 48/238 (20%), Positives = 90/238 (37%), Gaps = 18/238 (7%)
Query: 45 ITAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVV 104
+ A + P+ L +A + L V PK L+P ++ + P ++ P+ T+
Sbjct: 2553 LCAQALASPESLELASVASSETSSLSLVPPKDLLPVAVEILPVSEKNLSLTPSAPSLTLE 2612
Query: 105 SVKNPSPALPTA-----NNTVSHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSN 159
+ P+ A T++ +P P ++E L P S+A S P
Sbjct: 2613 AGSIPNGQEQEAPDSAEGTTLTVLPEGEELPLCVSESNGLELPPSAA-------SDEPLQ 2665
Query: 160 AAAMAPSTAVSVV-----SDSIKVQPLLISADNKVIIIQPQVQTQPESTAESRPPTEEPS 214
A T+ + + S + L++A+ + PE + +RPP S
Sbjct: 2666 EPLEADRTSEELTEAKTPTSSPEKPQELVTAEVAAPSTSSSATSSPEGPSPARPPRRRTS 2725
Query: 215 QGAQATKKKKEDRPPTQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYS 272
+ + + RP P+ + + + E E ++ +RQ+R ST P S
Sbjct: 2726 ADVE-IRGQGTGRPGQPPGPKVLRKLPGRLVTVVEEKELVRRRRQQRGAASTLVPGVS 2782
Score = 37.0 bits (84), Expect = 0.041
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 16/181 (8%)
Query: 31 PRIAALSDKQALGTITAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVAPGRDR 90
P +A S + L P+ P + LA A L P +L + G +
Sbjct: 1653 PVLAPSSTQTMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPS----QTLSLGTGNPQ 1708
Query: 91 PPKQPPTFQKATVVSVKNPSPALPTANNTVSHVPAPGSQPQ-----ALAEPAALASPLSS 145
P T +S+ S +PT T+S P P P A A P A ASP+
Sbjct: 1709 GPFPTQT------LSLTPASSLVPTPAQTLSLAPGPPLGPTQTLSLAPAPPLAPASPVGP 1762
Query: 146 AGVAYAIISTSPSNAAAMAPSTAVSVVSDSIKVQPLLISADNKVIIIQPQVQTQPESTAE 205
A ++ + S+A+ +AP++ ++ V P L A + + + P P S A
Sbjct: 1763 APAHTLTLAPASSSASLLAPASVQTLTLSPAPV-PTLGPAAAQTLALAPASTQSPASQAS 1821
Query: 206 S 206
S
Sbjct: 1822 S 1822
Score = 32.7 bits (73), Expect = 0.77
Identities = 29/85 (34%), Positives = 32/85 (37%), Gaps = 21/85 (24%)
Query: 82 LPVAPGRDRPPKQPPTFQKA-------------TVVSVKNPS------PALPTANNTVSH 122
L VA D PP+ P K TVV V NP P P +S
Sbjct: 975 LEVATAPDPPPRPKPVKMKVNRMLQPVPKQEGRTVVVVNNPRAPLGPVPVRPPPGPELSA 1034
Query: 123 VPAPGSQPQALAEPAALASPLSSAG 147
P PG PQ L PA+L S AG
Sbjct: 1035 QPTPGPVPQVL--PASLMVSASPAG 1057
Score = 32.0 bits (71), Expect = 1.3
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 12/159 (7%)
Query: 22 LKKQLHERQPRIAALSDKQALGTITA---VPVTGPQVSSLQRLAGQGAAVLPQVRPKTLI 78
L K +H P ++A + A TI++ VP + P +S + + V +
Sbjct: 1374 LLKLVHSPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLASPVSSTVSV 1433
Query: 79 P--DSLPVAPGRD--RPPKQPPTFQKATVVSVKNPSPAL-----PTANNTVSHVPAPGSQ 129
P SLP++ P P T + ++V PAL P V P P S
Sbjct: 1434 PLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSL 1493
Query: 130 PQALAEPAALASPLSSAGVAYAIISTSPSNAAAMAPSTA 168
+ A P+A A L A S +P + +AP+++
Sbjct: 1494 APSGASPSASALTLGLATAPSLSSSQTPGHPLLLAPTSS 1532
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 52.4 bits (124), Expect = 9e-07
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 25/123 (20%)
Query: 310 DEHCAACKRGANLQP-----CGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKAL--KKD 362
DE C C G P C +C YH +CL PPL P G W CP CQ K L K +
Sbjct: 891 DEPCKKC--GLPNHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLE 948
Query: 363 EGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQN----------EHQQLEERDRRL 412
E L + + K E K++L+ G ++N E Q+ +++D +
Sbjct: 949 E------QLQDLDVALKKKERAERRKERLVYVGISIENIIPPQEPDFSEDQEEKKKDSKK 1002
Query: 413 ASA 415
+ A
Sbjct: 1003 SKA 1005
>gi|209977097 tripartite motif-containing 66 [Homo sapiens]
Length = 1216
Score = 52.0 bits (123), Expect = 1e-06
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 307 ITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQ 355
I +++ CA C G L C CP +HLSC P L + P G WVC C+
Sbjct: 967 IENEDFCAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCR 1015
Score = 29.6 bits (65), Expect = 6.5
Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 14/164 (8%)
Query: 93 KQPPTFQKATVVSVKNPSPALPTANNTVSHVPAPGSQPQALAEPAALASPLSSAGVAYAI 152
+QP Q + + P + + +P + AL + + +PLS V I
Sbjct: 556 RQPAPVQSQSQEETLQATDEPPASQGSKPALPLDKNTAAALPQASGEETPLSVPPVDSTI 615
Query: 153 ISTSPSNAAAMAPSTAVSVVSDSIKVQPLLISADNKVIIIQPQVQTQPESTAESRPPTEE 212
+SP+ + S ++ S++++++ +S+ ++PQ+Q+ TA
Sbjct: 616 QHSSPNVVRKHSTSLSIMGFSNTLEME---LSSTRLERPLEPQIQSVSNLTA-------- 664
Query: 213 PSQGAQATKKKKEDRPPTQENPEKIAFMVALGLVTTEHLEEIQS 256
GA PP + A+ +TT HL+ + S
Sbjct: 665 ---GAPQAVPSLLSAPPKMVSSLTSVQNQAMPSLTTSHLQTVPS 705
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 52.0 bits (123), Expect = 1e-06
Identities = 49/174 (28%), Positives = 64/174 (36%), Gaps = 42/174 (24%)
Query: 196 VQTQPESTAESRPPTEEPSQGAQATKKKKEDRPPTQENPEKIAFMVALGLVTTEHLEEIQ 255
++T P+ T SR +EP K +D PP P+KI +
Sbjct: 790 METLPDGTKRSRRQIKEP------VKFVPQDVPP---EPKKIPIRNTRTRGRKRSFVPEE 840
Query: 256 SKRQERKRRSTANPAYSGLLETERKRLASNYLNNPLFLTARANEDPCWKNEITHDEHCAA 315
K +ER R ER++ S P K E E CA
Sbjct: 841 EKHEERVPR-------------ERRQRQSVLQKKP-------------KAEDLRTE-CAT 873
Query: 316 CKR---GANLQPCGTCPGAYHLSCLEPPLKTAPKGV---WVCPRCQQKALKKDE 363
CK NL C C YH CL+PPLK +PK W+C C + K+DE
Sbjct: 874 CKGTGDNENLVRCDECRLCYHFGCLDPPLKKSPKQTGYGWICQECDSSSSKEDE 927
Score = 45.1 bits (105), Expect = 1e-04
Identities = 36/123 (29%), Positives = 45/123 (36%), Gaps = 22/123 (17%)
Query: 249 EHLEEIQSKRQERKRRSTANPAYSGLLETERKRLASNYLNNPLFLTARANEDPCWKNEIT 308
E LEE+Q+ + + A G R+ LN P L A P K T
Sbjct: 663 ESLEELQNLNGKLRSEGQGIWALLG-------RITGQKLNIPAILRAPKERKPSKKEGGT 715
Query: 309 HDEH--------CAACKRGAN---LQPCGTCPGAYHLSCLEPPLKTAPK----GVWVCPR 353
C CK+ + L C TC YHL CL+PPL P+ W C
Sbjct: 716 QKTSTLPAVLYSCGICKKNHDQHLLLLCDTCKLHYHLGCLDPPLTRMPRKTKNSYWQCSE 775
Query: 354 CQQ 356
C Q
Sbjct: 776 CDQ 778
>gi|32967605 bromodomain adjacent to zinc finger domain, 1A isoform b
[Homo sapiens]
Length = 1524
Score = 51.6 bits (122), Expect = 2e-06
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 265 STANPAYSGLLETERKRLASNYLNNPLFL-TARANEDPCWKNEITHDEHCAACKR---GA 320
S + +Y +L+ R+ L S+ + +FL + + W I + C C++
Sbjct: 1071 SDSGRSYKTVLDRWRESLLSSASLSQVFLHLSTLDRSVIWSKSILN-ARCKICRKKGDAE 1129
Query: 321 NLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQK 357
N+ C C +H C+ P LKT P+G W CP C+ K
Sbjct: 1130 NMVLCDGCDRGHHTYCVRPKLKTVPEGDWFCPECRPK 1166
>gi|32967603 bromodomain adjacent to zinc finger domain, 1A isoform a
[Homo sapiens]
Length = 1556
Score = 51.6 bits (122), Expect = 2e-06
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 265 STANPAYSGLLETERKRLASNYLNNPLFL-TARANEDPCWKNEITHDEHCAACKR---GA 320
S + +Y +L+ R+ L S+ + +FL + + W I + C C++
Sbjct: 1103 SDSGRSYKTVLDRWRESLLSSASLSQVFLHLSTLDRSVIWSKSILN-ARCKICRKKGDAE 1161
Query: 321 NLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQK 357
N+ C C +H C+ P LKT P+G W CP C+ K
Sbjct: 1162 NMVLCDGCDRGHHTYCVRPKLKTVPEGDWFCPECRPK 1198
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 51.2 bits (121), Expect = 2e-06
Identities = 64/222 (28%), Positives = 93/222 (41%), Gaps = 50/222 (22%)
Query: 27 HERQPRIAALSDKQALGTITAVPVT-------GPQVSSLQRLAGQGAAVLPQVRPKTLIP 79
H P I A +Q T PV GPQ +L Q P+ + P
Sbjct: 843 HHTPPSIGA---QQPPATTIPAPVPTPPAMPPGPQSQALHPPPRQTPTPPTTQLPQQVQP 899
Query: 80 DSLPVAPGRDRPPKQPPTFQKATVVSVKNP-SPALPTANNTVSHVPAPGSQPQALAEPAA 138
SLP AP D+P +QP + Q++T SV P +P LP P P
Sbjct: 900 -SLPAAPSADQPQQQPRS-QQSTAASVPTPTAPLLP---------PQP------------ 936
Query: 139 LASPLSSAGVAY-AIISTSPSNAAAMAPSTAVSVVSDSIKVQPLLISADNKVIIIQPQ-V 196
A+PLS V+ +S PS ++ S A++ S +V+ + K+ + QP+
Sbjct: 937 -ATPLSQPAVSIEGQVSNPPSTSSTEVNSQAIAEKQPSQEVK-----MEAKMEVDQPEPA 990
Query: 197 QTQPESTAESR--------PPTEEPSQGAQATKKKKEDRPPT 230
TQPE +ES+ TEE S + K++ED+P T
Sbjct: 991 DTQPEDISESKVEDCKMESTETEERSTELKTEIKEEEDQPST 1032
>gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [Homo
sapiens]
Length = 1379
Score = 50.8 bits (120), Expect = 3e-06
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 313 CAACKRGAN---LQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKK 361
C C RG L C C YH+ CL PPL PKGVW CP+C K+
Sbjct: 260 CRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKR 311
>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
sapiens]
Length = 1560
Score = 50.8 bits (120), Expect = 3e-06
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 313 CAACKRGAN---LQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKK 361
C C RG L C C YH+ CL PPL PKGVW CP+C K+
Sbjct: 327 CRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKR 378
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 49.3 bits (116), Expect = 8e-06
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 313 CAACKRGAN---LQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKK 361
C C RG N L C C +YH CL PPL PKG W CP+C + K
Sbjct: 296 CMFCGRGNNEDKLLLCDGCDDSYHTFCLIPPLPDVPKGDWRCPKCVAEECSK 347
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 49.3 bits (116), Expect = 8e-06
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 313 CAACKRGAN---LQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKK 361
C C RG N L C C +YH CL PPL PKG W CP+C + K
Sbjct: 296 CMFCGRGNNEDKLLLCDGCDDSYHTFCLIPPLPDVPKGDWRCPKCVAEECSK 347
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.126 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,272,328
Number of Sequences: 37866
Number of extensions: 1123305
Number of successful extensions: 7968
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 537
Number of HSP's that attempted gapping in prelim test: 6614
Number of HSP's gapped (non-prelim): 1686
length of query: 489
length of database: 18,247,518
effective HSP length: 106
effective length of query: 383
effective length of database: 14,233,722
effective search space: 5451515526
effective search space used: 5451515526
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.