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Search of human proteins with 208022703
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208022703 modulator of retrovirus infection [Homo sapiens]
(157 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208022703 modulator of retrovirus infection [Homo sapiens] 311 1e-85
gi|33598960 alpha-2B-adrenergic receptor [Homo sapiens] 37 0.007
gi|29826279 tubby isoform b [Homo sapiens] 37 0.009
gi|19923167 tubby isoform a [Homo sapiens] 37 0.009
gi|124244083 F-box protein 10 [Homo sapiens] 34 0.045
gi|140161500 ankyrin repeat and sterile alpha motif domain conta... 34 0.045
gi|145312251 EPH receptor A6 isoform a [Homo sapiens] 33 0.076
gi|203096856 kinesin family member 7 [Homo sapiens] 33 0.076
gi|39545575 hypothetical protein LOC55924 isoform 2 [Homo sapiens] 33 0.100
gi|9506861 hypothetical protein LOC55924 isoform 1 [Homo sapiens] 33 0.100
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 33 0.100
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 33 0.13
gi|4502805 chromogranin A precursor [Homo sapiens] 33 0.13
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 32 0.17
gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens] 32 0.22
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 32 0.22
gi|38016914 SAM domain- and HD domain-containing protein 1 [Homo... 32 0.22
gi|164419758 bromodomain containing 2 [Homo sapiens] 32 0.22
gi|4826806 bromodomain containing 2 [Homo sapiens] 32 0.22
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 32 0.22
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 32 0.22
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 32 0.22
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 32 0.22
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 32 0.22
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 32 0.29
gi|239756231 PREDICTED: similar to hCG1812074 [Homo sapiens] 32 0.29
gi|239756229 PREDICTED: similar to hCG1812074 [Homo sapiens] 32 0.29
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 32 0.29
gi|239750771 PREDICTED: similar to hCG1812074 [Homo sapiens] 32 0.29
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 32 0.29
>gi|208022703 modulator of retrovirus infection [Homo sapiens]
Length = 157
Score = 311 bits (797), Expect = 1e-85
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 METLQSETKTRVLPSWLTAQVATKNVAPMKAPKRMRMAAVPVAAARLPATRTVYCMNEAE 60
METLQSETKTRVLPSWLTAQVATKNVAPMKAPKRMRMAAVPVAAARLPATRTVYCMNEAE
Sbjct: 1 METLQSETKTRVLPSWLTAQVATKNVAPMKAPKRMRMAAVPVAAARLPATRTVYCMNEAE 60
Query: 61 IVDVALGILIESRKQEKACEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAP 120
IVDVALGILIESRKQEKACEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAP
Sbjct: 61 IVDVALGILIESRKQEKACEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAP 120
Query: 121 GLSPSQRPGGSSSACSRSPEEEEEEDVLKYVREIFFS 157
GLSPSQRPGGSSSACSRSPEEEEEEDVLKYVREIFFS
Sbjct: 121 GLSPSQRPGGSSSACSRSPEEEEEEDVLKYVREIFFS 157
>gi|33598960 alpha-2B-adrenergic receptor [Homo sapiens]
Length = 450
Score = 37.0 bits (84), Expect = 0.007
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 74 KQEKACEQPALAGADNPEHSPPCS---VSPHTSSGSSSEE----EDSGKQALAPGLS--P 124
KQ + ALA A P + S V+ H+ S EE ED+G +AL P + P
Sbjct: 219 KQPRPDHGGALASAKLPALASVASAREVNGHSKSTGEKEEGETPEDTGTRALPPSWAALP 278
Query: 125 SQRPGGSSSACSRSPEEEEEED 146
+ G C SPE+E EE+
Sbjct: 279 NSGQGQKEGVCGASPEDEAEEE 300
>gi|29826279 tubby isoform b [Homo sapiens]
Length = 506
Score = 36.6 bits (83), Expect = 0.009
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 5 QSETKTRVLPSWLTAQVATKNVAPMKAPKRMRMAAVPVAAARLPATRTVYCMNEAEIVDV 64
QSE + ++ S+L++ +T + + +A+V + A R A + A
Sbjct: 63 QSEEQAPLVESYLSSSGSTS----YQVQEADSLASVQLGATRPTAPASAKRTKAAATAGG 118
Query: 65 ALGILIESRK-QEKACEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLS 123
G + +K + K PA D E P + + G S +D+G+ A G
Sbjct: 119 QGGAARKEKKGKHKGTSGPAALAEDKSEAQGPVQI---LTVGQSDHAQDAGETAAGGGER 175
Query: 124 PS--------QRPGGSSSACSRSPEEEEEED 146
PS QR G SSS EE+EEE+
Sbjct: 176 PSGQDLRATMQRKGISSSMSFDEDEEDEEEN 206
>gi|19923167 tubby isoform a [Homo sapiens]
Length = 561
Score = 36.6 bits (83), Expect = 0.009
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 5 QSETKTRVLPSWLTAQVATKNVAPMKAPKRMRMAAVPVAAARLPATRTVYCMNEAEIVDV 64
QSE + ++ S+L++ +T + + +A+V + A R A + A
Sbjct: 118 QSEEQAPLVESYLSSSGSTS----YQVQEADSLASVQLGATRPTAPASAKRTKAAATAGG 173
Query: 65 ALGILIESRK-QEKACEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLS 123
G + +K + K PA D E P + + G S +D+G+ A G
Sbjct: 174 QGGAARKEKKGKHKGTSGPAALAEDKSEAQGPVQI---LTVGQSDHAQDAGETAAGGGER 230
Query: 124 PS--------QRPGGSSSACSRSPEEEEEED 146
PS QR G SSS EE+EEE+
Sbjct: 231 PSGQDLRATMQRKGISSSMSFDEDEEDEEEN 261
>gi|124244083 F-box protein 10 [Homo sapiens]
Length = 956
Score = 34.3 bits (77), Expect = 0.045
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 63 DVALGILIESRKQE---KACEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALA 119
D + + +ESR Q K C+ + G+ +P + P S SP S + S+E + G +
Sbjct: 290 DFLMSLDLESRDQAWSPKTCDI-VIEGSQSP--TSPASSSPKPGSKAGSQEAEVG----S 342
Query: 120 PGLSPSQRPGGSSSACSRSPEEEEEEDVL 148
G +Q P S S S E+E+E+ ++
Sbjct: 343 DGERVAQTPDSSDGGLSPSGEDEDEDQLM 371
>gi|140161500 ankyrin repeat and sterile alpha motif domain
containing 1 [Homo sapiens]
Length = 1134
Score = 34.3 bits (77), Expect = 0.045
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 70 IESRKQEKACEQPALAGADNPEHSPPCSVSPHT----SSGSSSEEEDSGKQALAPGLSPS 125
+E E + A A + P + ++S H+ +SG SS+++ + K+A A G+ P+
Sbjct: 340 VEKAVTELIIDFDANAEEEGPYEALYNAISCHSLDSMASGRSSDQDSTNKEAEAAGVKPA 399
Query: 126 -QRPGGSSSACSRSPEEEEEED 146
RP ++ P +EEEED
Sbjct: 400 GVRPRERPPPPAKPPPDEEEED 421
>gi|145312251 EPH receptor A6 isoform a [Homo sapiens]
Length = 1130
Score = 33.5 bits (75), Expect = 0.076
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 93 SPPCS-VSPHTSSGSSSEEE-----DSGKQALAPGLSPSQRPGGSSSACSRSPEEEEEED 146
SPP + SP + SSSE G PG S RPG + EEEEEED
Sbjct: 5 SPPAARSSPAPQAASSSEAAAPATGQPGPSCPVPGTSRRGRPGTPPAGRVEEEEEEEEED 64
Query: 147 VLK 149
V K
Sbjct: 65 VDK 67
>gi|203096856 kinesin family member 7 [Homo sapiens]
Length = 1343
Score = 33.5 bits (75), Expect = 0.076
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 94 PPCSVSPHTSSGSSSEEEDSGKQALAPGLSPSQRPGGSSSACSRSPEEEEE 144
P C S E+ +G++A A L+ R G SSA S EEEEE
Sbjct: 581 PACLPGDEVGSEQRGEQVTNGREAGAELLTEVNRLGSGSSAASEEEEEEEE 631
>gi|39545575 hypothetical protein LOC55924 isoform 2 [Homo sapiens]
Length = 282
Score = 33.1 bits (74), Expect = 0.100
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 79 CEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLSPSQRPGGSSSACSRS 138
CE P G P CS S S GSS+ + S + L+P R S +
Sbjct: 59 CEHPCWEGGRGPARPTVCSPSSQPSLGSST-KFPSHRSVCGRDLAPLPRTQPHQSCAQQG 117
Query: 139 PEEEEEED 146
PE E +D
Sbjct: 118 PERVEPDD 125
>gi|9506861 hypothetical protein LOC55924 isoform 1 [Homo sapiens]
Length = 297
Score = 33.1 bits (74), Expect = 0.100
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 79 CEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLSPSQRPGGSSSACSRS 138
CE P G P CS S S GSS+ + S + L+P R S +
Sbjct: 74 CEHPCWEGGRGPARPTVCSPSSQPSLGSST-KFPSHRSVCGRDLAPLPRTQPHQSCAQQG 132
Query: 139 PEEEEEED 146
PE E +D
Sbjct: 133 PERVEPDD 140
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 33.1 bits (74), Expect = 0.100
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 90 PEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLSPSQRPGGSSSACSRSP 139
P H PP PH +DS K +A G P+ G + A S +P
Sbjct: 83 PPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAP 132
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 32.7 bits (73), Expect = 0.13
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 80 EQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAP---GLSPSQRPGGSSSACS 136
+ P+L+G + SP SP G +S S + AP S S SSS+ S
Sbjct: 335 DAPSLSGRSSAASSPAAGRSPADHRGYASLRAASPAPSSAPSHASSSASSHSSSSSSSGS 394
Query: 137 RSPEEEEEEDVL 148
S ++E E+D+L
Sbjct: 395 SSSDDEFEDDLL 406
>gi|4502805 chromogranin A precursor [Homo sapiens]
Length = 457
Score = 32.7 bits (73), Expect = 0.13
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 73 RKQEKACEQPALAGADN--PEHSPPCSVSPHTSSGSSS-EEEDSGKQALA------PGLS 123
R++E+ E+ A AG + E P ++PH S G + +S +ALA PG
Sbjct: 227 REEEEEEEEEAEAGEEAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEALAVDGAGKPGAE 286
Query: 124 PSQRPGGSSSACSRSPEEEEEE 145
+Q P G +EEEEE
Sbjct: 287 EAQDPEGKGEQEHSQQKEEEEE 308
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 32.3 bits (72), Expect = 0.17
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 92 HSPPCSVSPHTSSGSSSEEEDSGKQALAPG----------LSPSQRPGGSSSACSRSPEE 141
HSPP + SP S SSS SG PG P QRP S++ S SP +
Sbjct: 437 HSPPAATSP--GSLSSSSGHGSGSYPPPPGPHPPLPHPLHHGPGQRPSSGSASASGSPSD 494
>gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens]
Length = 993
Score = 32.0 bits (71), Expect = 0.22
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 92 HSPPCSVSPHTSSGSSSEEEDSGKQALAPGLSPSQRPGGSSSACSR---------SPEEE 142
H+ P TS+ + S+ ++ G++A AP ++P G S A SPE
Sbjct: 661 HAATKPQGPATSTRTGSQRQEGGQEAAAPARQGRKKPAGKSLASEAPSQPSLNGGSPEGV 720
Query: 143 EEEDVLKYVR 152
E +D + + R
Sbjct: 721 ESQDGVDHFR 730
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 32.0 bits (71), Expect = 0.22
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 72 SRKQEKACEQPALAGADNPEHSPPCSVSPHTSSGSSSEEE------DSGKQALAPGLSPS 125
S + C QP G SPP S +S GSS+ D G+QAL+P +
Sbjct: 102 SAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEK 161
Query: 126 QRPGGSSSACSRSPEEEEEEDV 147
+ G S S S E + +V
Sbjct: 162 RSGGKRKSDSSDSQEGNYKSEV 183
>gi|38016914 SAM domain- and HD domain-containing protein 1 [Homo
sapiens]
Length = 626
Score = 32.0 bits (71), Expect = 0.22
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 85 AGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLS--PSQRPGGSSSACSRSPEEE 142
A ++ P P C SP T S + S E D +PGL P + G CS
Sbjct: 4 ADSEQPSKRPRCDDSPRTPSNTPSAEAD-----WSPGLELHPDYKTWGPEQVCSFLRRGG 58
Query: 143 EEEDV-LKYVRE 153
EE V LK +RE
Sbjct: 59 FEEPVLLKNIRE 70
>gi|164419758 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 32.0 bits (71), Expect = 0.22
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 18/95 (18%)
Query: 71 ESRKQEKACEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAP-GLSPSQRPG 129
E +K+ KA + AGAD + P P + G AL P G PS G
Sbjct: 553 EKKKKRKAEKHRGRAGADEDDKGPRAPRPPQPKKSKKASGSGGGSAALGPSGFGPS---G 609
Query: 130 GSSS-----ACSRSP---------EEEEEEDVLKY 150
GS + A +P EEEEE + Y
Sbjct: 610 GSGTKLPKKATKTAPPALPTGYDSEEEEESRPMSY 644
Score = 28.5 bits (62), Expect = 2.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 117 ALAPGLSPSQRPGGSSSACSRSPEEEEEED 146
A+ PGL+ S S + S S EEEEE+
Sbjct: 468 AMPPGLAKSSSESSSEESSSESSSEEEEEE 497
>gi|4826806 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 32.0 bits (71), Expect = 0.22
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 18/95 (18%)
Query: 71 ESRKQEKACEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAP-GLSPSQRPG 129
E +K+ KA + AGAD + P P + G AL P G PS G
Sbjct: 553 EKKKKRKAEKHRGRAGADEDDKGPRAPRPPQPKKSKKASGSGGGSAALGPSGFGPS---G 609
Query: 130 GSSS-----ACSRSP---------EEEEEEDVLKY 150
GS + A +P EEEEE + Y
Sbjct: 610 GSGTKLPKKATKTAPPALPTGYDSEEEEESRPMSY 644
Score = 28.5 bits (62), Expect = 2.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 117 ALAPGLSPSQRPGGSSSACSRSPEEEEEED 146
A+ PGL+ S S + S S EEEEE+
Sbjct: 468 AMPPGLAKSSSESSSEESSSESSSEEEEEE 497
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 32.0 bits (71), Expect = 0.22
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 15/140 (10%)
Query: 20 QVATKNVAPMKAPKR-MRMAAVPVAAARLPATRTVYCMNEAEIVDVALGILIESRKQEKA 78
QV+ KN A + + +++ A + A+ P RT + VD A+G L + Q +
Sbjct: 1061 QVSKKNPASLPLTQAALKVLAQKASEAQPPVART----QPSSGVDSAVGTLPATSPQSTS 1116
Query: 79 CE--------QPALAGADNPEHSPPCSVSPHTSSGSSS--EEEDSGKQALAPGLSPSQRP 128
+ +P L +P S SS SSS EE+ G Q + P
Sbjct: 1117 VQAKGTNKLRKPKLPEVQQATKAPESSDDSEDSSDSSSGSEEDGEGPQGAKSAHTLGPTP 1176
Query: 129 GGSSSACSRSPEEEEEEDVL 148
+ + + E E+DV+
Sbjct: 1177 SRTETLVEETAAESSEDDVV 1196
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
sapiens]
Length = 1411
Score = 32.0 bits (71), Expect = 0.22
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 15/140 (10%)
Query: 20 QVATKNVAPMKAPKR-MRMAAVPVAAARLPATRTVYCMNEAEIVDVALGILIESRKQEKA 78
QV+ KN A + + +++ A + A+ P RT + VD A+G L + Q +
Sbjct: 984 QVSKKNPASLPLTQAALKVLAQKASEAQPPVART----QPSSGVDSAVGTLPATSPQSTS 1039
Query: 79 CE--------QPALAGADNPEHSPPCSVSPHTSSGSSS--EEEDSGKQALAPGLSPSQRP 128
+ +P L +P S SS SSS EE+ G Q + P
Sbjct: 1040 VQAKGTNKLRKPKLPEVQQATKAPESSDDSEDSSDSSSGSEEDGEGPQGAKSAHTLGPTP 1099
Query: 129 GGSSSACSRSPEEEEEEDVL 148
+ + + E E+DV+
Sbjct: 1100 SRTETLVEETAAESSEDDVV 1119
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 32.0 bits (71), Expect = 0.22
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 82 PALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLSPSQRPGGSSSACSRSPEE 141
PA + + + S S S +SS SSS S + + S S SSS+ S S
Sbjct: 2612 PASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2671
Query: 142 EEEED 146
+ED
Sbjct: 2672 TTDED 2676
Score = 28.9 bits (63), Expect = 1.9
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 72 SRKQEKACEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLSPSQRPGGS 131
S +A + + + + S S S +SS SSS S + + S S S
Sbjct: 2603 SAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2662
Query: 132 SSACSRSPEEEEEE 145
SS+ S S +E+
Sbjct: 2663 SSSSSSSSSTTDED 2676
Score = 26.6 bits (57), Expect = 9.3
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 86 GADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLSPSQRPGGSSSACSRS 138
G N + + SP +SS SSS S + + S S SSS+ S S
Sbjct: 2598 GGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2650
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 32.0 bits (71), Expect = 0.22
Identities = 17/57 (29%), Positives = 22/57 (38%)
Query: 73 RKQEKACEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLSPSQRPG 129
R+ + P G P +PP S S SS + SG+ A PG P G
Sbjct: 394 RRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERG 450
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 32.0 bits (71), Expect = 0.22
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 58 EAEIVDVALGILIESRKQEKACEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQA 117
+AE ++VA G E A P D E + V + D+G+
Sbjct: 307 QAEAIEVAAG--------ESAGRSPGELAWDAAEEAEVPGVKGSEEAAPGDARADAGEDR 358
Query: 118 LAPGLSPSQRPGGSSSACSRSPEEEEEED 146
+ G P Q PG RSPE EE+
Sbjct: 359 VGDG--PQQEPGEDEERRERSPEGPREEE 385
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 31.6 bits (70), Expect = 0.29
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 68 ILIESRKQEKACEQ--PALAGADNPEHSPPCSVSPH---------TS----SGSSSEEED 112
+L+ + E E+ PA P PP + PH TS S SSE+ED
Sbjct: 677 LLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCSYPSEDSSEDED 736
Query: 113 SGKQALAPGLSPSQRPGGSSSACSRSPEEEEEED 146
++ + + P G R P+++EEED
Sbjct: 737 DEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEED 770
>gi|239756231 PREDICTED: similar to hCG1812074 [Homo sapiens]
Length = 222
Score = 31.6 bits (70), Expect = 0.29
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 79 CEQPALAGAD-NPEHSPPCSVSPHTSSGSSSEEEDS-GKQALAPGLSPSQRPGG------ 130
C + + G + P H PPC + +G++ +++ + G Q++ PG Q G
Sbjct: 122 CARDTVRGGECEPRHKPPCQEAEGADAGAAQDQQGARGPQSMRPGQEQGQGGRGFLICSV 181
Query: 131 -----SSSACSRSP 139
S+SA R+P
Sbjct: 182 VSLLASTSAVPRAP 195
>gi|239756229 PREDICTED: similar to hCG1812074 [Homo sapiens]
Length = 225
Score = 31.6 bits (70), Expect = 0.29
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 79 CEQPALAGAD-NPEHSPPCSVSPHTSSGSSSEEEDS-GKQALAPGLSPSQRPGGSSSACS 136
C + + G + P H PPC + +G++ +++ + G Q++ PG Q G S
Sbjct: 122 CARDTVRGGECEPRHKPPCQEAEGADAGAAQDQQGARGPQSMRPGQEQGQGGRGLPHLLS 181
Query: 137 RSPEEE 142
P +
Sbjct: 182 GLPPRQ 187
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 31.6 bits (70), Expect = 0.29
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 68 ILIESRKQEKACEQ--PALAGADNPEHSPPCSVSPH---------TS----SGSSSEEED 112
+L+ + E E+ PA P PP + PH TS S SSE+ED
Sbjct: 677 LLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDED 736
Query: 113 SGKQALAPGLSPSQRPGGSSSACSRSPEEEEEED 146
++ + + P G R P+++EEED
Sbjct: 737 DEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEED 770
>gi|239750771 PREDICTED: similar to hCG1812074 [Homo sapiens]
Length = 222
Score = 31.6 bits (70), Expect = 0.29
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 79 CEQPALAGAD-NPEHSPPCSVSPHTSSGSSSEEEDS-GKQALAPGLSPSQRPGG------ 130
C + + G + P H PPC + +G++ +++ + G Q++ PG Q G
Sbjct: 122 CARDTVRGGECEPRHKPPCQEAEGADAGAAQDQQGARGPQSMRPGQEQGQGGRGFLICSV 181
Query: 131 -----SSSACSRSP 139
S+SA R+P
Sbjct: 182 VSLLASTSAVPRAP 195
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 31.6 bits (70), Expect = 0.29
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 68 ILIESRKQEKACEQ--PALAGADNPEHSPPCSVSPH---------TS----SGSSSEEED 112
+L+ + E E+ PA P PP + PH TS S SSE+ED
Sbjct: 677 LLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDED 736
Query: 113 SGKQALAPGLSPSQRPGGSSSACSRSPEEEEEED 146
++ + + P G R P+++EEED
Sbjct: 737 DEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEED 770
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.122 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,921,473
Number of Sequences: 37866
Number of extensions: 352570
Number of successful extensions: 3106
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 252
Number of HSP's that attempted gapping in prelim test: 2583
Number of HSP's gapped (non-prelim): 669
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.