Guide to the Human Genome
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Name: LOC642131 Sequence: fasta or formatted (222aa) NCBI GI: 239750771
Description:

PREDICTED: similar to hCG1812074

Not currently referenced in the text

Other entries for this name:
alt prot {277aa} PREDICTED: similar to hCG1812074
alt prot {225aa} PREDICTED: similar to hCG1812074
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         16           2
 C cysteine            2.3          5           1
 D aspartate           2.7          6           1
 E glutamate           4.5         10           1
 F phenylalanine       2.7          6           2
 G glycine             9.5         21           2
 H histidine           2.7          6           1
 I isoleucine          2.7          6           1
 K lysine              5.0         11           2
 L leucine            10.8         24           3
 M methionine          1.4          3           1
 N asparagine          2.7          6           1
 P proline             6.8         15           2
 Q glutamine           5.9         13           2
 R arginine            5.0         11           1
 S serine             11.7         26           3
 T threonine           3.6          8           1
 V valine              8.1         18           2
 W tryptophan          2.7          6           2
 Y tyrosine            2.3          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1812074 
LOC100134397          1.000   PREDICTED: similar to hCG1812074 
LOC642131             0.935   PREDICTED: similar to hCG1812074 
LOC642131             0.794   PREDICTED: similar to hCG1812074 
LOC100292858          0.555   PREDICTED: similar to hCG2029977 
LOC100289944          0.541   PREDICTED: hypothetical protein XP_002347520 
LOC100291190          0.288   PREDICTED: hypothetical protein XP_002347529 
LOC100293211          0.285   PREDICTED: similar to hCG2042717 
LOC100293270          0.281   PREDICTED: similar to hCG2042717 
LOC100290320          0.281   PREDICTED: hypothetical protein XP_002347525 
LOC652494             0.271   PREDICTED: similar to hCG2042717 
LOC100290115          0.244   PREDICTED: hypothetical protein XP_002347523 
LOC100289290          0.244   PREDICTED: hypothetical protein XP_002343511 
LOC401847             0.244   PREDICTED: similar to hCG1793095 
LOC646057             0.241   PREDICTED: similar to hCG2003024 
LOC100290006          0.239   PREDICTED: hypothetical protein XP_002347521 
LOC646057             0.239   PREDICTED: similar to hCG2003024 
LOC100290036          0.218   PREDICTED: hypothetical protein XP_002347522 
LOC100290738          0.204   PREDICTED: hypothetical protein XP_002348171 
LOC100287372          0.204   PREDICTED: hypothetical protein XP_002343513 
LOC100133862          0.197   PREDICTED: similar to hCG1773549 
LOC100132941          0.193   PREDICTED: similar to Ig heavy chain 
LOC100132941          0.179   PREDICTED: similar to Ig heavy chain 
LOC100292999          0.179   PREDICTED: hypothetical protein 
LOC646057             0.179   PREDICTED: similar to hCG2003024 
LOC100292483          0.174   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290448          0.174   PREDICTED: hypothetical protein XP_002347494 
LOC100291056          0.174   PREDICTED: hypothetical protein XP_002347527 
LOC100290146          0.174   PREDICTED: hypothetical protein XP_002347524 
LOC100130811          0.162   PREDICTED: similar to hCG2038921 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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