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Search of human proteins with 20270317
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20270317 mitochondrial ribosome recycling factor isoform 1
[Homo sapiens]
(262 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20270317 mitochondrial ribosome recycling factor isoform 1 [H... 505 e-143
gi|40317624 mitochondrial ribosome recycling factor isoform 2 [H... 359 2e-99
gi|116089284 fibrous sheath interacting protein 1 [Homo sapiens] 40 0.002
gi|150010604 kinesin family member 4B [Homo sapiens] 35 0.087
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 35 0.087
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 35 0.087
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 35 0.087
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 35 0.087
gi|110815815 centlein isoform 1 [Homo sapiens] 33 0.19
gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo sap... 33 0.33
gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo sap... 33 0.33
gi|118582286 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase... 32 0.56
gi|4503355 dedicator of cytokinesis 1 [Homo sapiens] 31 0.96
gi|21389505 janus kinase and microtubule interacting protein 1 i... 31 1.3
gi|150456473 janus kinase and microtubule interacting protein 1 ... 31 1.3
gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 ... 30 1.6
gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 ... 30 1.6
gi|157785649 leucine-rich repeats and IQ motif containing 3 [Hom... 30 2.1
gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens] 30 2.8
gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens] 30 2.8
gi|24429572 TBP-associated factor RNA polymerase 1-like [Homo sa... 30 2.8
gi|169213020 PREDICTED: similar to ribosomal protein L24-like [H... 29 3.6
gi|89047474 PREDICTED: similar to ribosomal protein L24-like [Ho... 29 3.6
gi|27485363 PREDICTED: similar to ribosomal protein L24-like [Ho... 29 3.6
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 29 3.6
gi|24308039 hypothetical protein LOC23376 [Homo sapiens] 29 3.6
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 29 3.6
gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens] 29 3.6
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens] 29 3.6
gi|82880656 coiled-coil domain containing 46 isoform a [Homo sap... 29 3.6
>gi|20270317 mitochondrial ribosome recycling factor isoform 1 [Homo
sapiens]
Length = 262
Score = 505 bits (1300), Expect = e-143
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 60
MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
Sbjct: 1 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 60
Query: 61 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 120
KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
Sbjct: 61 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 120
Query: 121 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 180
VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
Sbjct: 121 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 180
Query: 181 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ 240
PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ
Sbjct: 181 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ 240
Query: 241 MADDTVAELDRHLAVKTKELLG 262
MADDTVAELDRHLAVKTKELLG
Sbjct: 241 MADDTVAELDRHLAVKTKELLG 262
>gi|40317624 mitochondrial ribosome recycling factor isoform 2 [Homo
sapiens]
Length = 201
Score = 359 bits (921), Expect = 2e-99
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 60
MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
Sbjct: 1 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 60
Query: 61 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 120
KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
Sbjct: 61 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 120
Query: 121 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 180
VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
Sbjct: 121 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 180
Query: 181 PIPQ 184
PIPQ
Sbjct: 181 PIPQ 184
>gi|116089284 fibrous sheath interacting protein 1 [Homo sapiens]
Length = 581
Score = 40.0 bits (92), Expect = 0.002
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 22/194 (11%)
Query: 57 TKKAKAKGKGQSQTRVNINAALVEDIIN-LEEVNEEMKSVIEALKDNFNKTLNIRTSPGS 115
T+K + +GK +Q + N L ++ N + V+ E K ++E LKD K + +S G
Sbjct: 241 TEKIELRGK-HNQDFIKRNIELAKESRNPVVMVDREKKRLVELLKDLDEKDSGLSSSEGD 299
Query: 116 LDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEG 175
V +LA+ Q Q++ +L ++ AS T ++ E+ N P+ +G
Sbjct: 300 QSGWVVPVKGYELAVTQHQQLAEIDIKLQELSAAS---PTISSFSPRLENRNNQKPDRDG 356
Query: 176 TLIRVPIPQVTREHREMLVKLAKQ---NTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIR 232
R M V ++ NT + +D ++R KLK K+ V E T
Sbjct: 357 -------------ERNMEVTPGEKILRNTKEQRDLHNRLREID-EKLKMMKENVLESTSC 402
Query: 233 LIEKQISQMADDTV 246
L E+Q+ + D+ +
Sbjct: 403 LSEEQLKCLLDECI 416
>gi|150010604 kinesin family member 4B [Homo sapiens]
Length = 1234
Score = 34.7 bits (78), Expect = 0.087
Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 46/229 (20%)
Query: 58 KKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLD 117
K ++ K QT A ++E II E+VNE++ + +E L+ + L+ L
Sbjct: 401 KLSRCLSKAAGQT-----AQMLERIILTEQVNEKLNAKLEELRQHVACKLD-------LQ 448
Query: 118 KIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAI--RESGMNLNPEVE- 174
K+ D +L N +I QLI CTAAAI E+ + +PE
Sbjct: 449 KLVETLEDQELKEN--VEIICNLQQLITQLSDETVACTAAAIDTAVEEEAQVETSPETSR 506
Query: 175 -----GTLIRVPIPQVTRE---------HREMLVKLAKQNTNKA-------KDSLRKVRT 213
T + Q+++E +E LV+ QN N+ +D+++ +
Sbjct: 507 SSDAFTTQHALHQAQMSKEVVELNNALALKEALVRKMTQNDNQLQPIQFQYQDNIKNLEL 566
Query: 214 NSMNKLKKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKELLG 262
+N K+ ++ V E ++ +K ++Q A+L H +EL G
Sbjct: 567 EVINLQKEKEELVRE--LQTAKKNVNQ------AKLSEHRHKLLQELEG 607
>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
sapiens]
Length = 3118
Score = 34.7 bits (78), Expect = 0.087
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 145 LVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKA 204
L +++ P TAA ++A+++ N + L Q+T H+ + K+N NK
Sbjct: 2020 LGKLSAIPNDTAAKLQAVKDKARQANDTAKDVLA-----QITELHQNL--DGLKKNYNKL 2072
Query: 205 KDSLRK----VRTNSMNKLKKSKDTVSEDTIRLIEKQISQMAD--DTVAELDRHLAVKTK 258
DS+ K V+ S NK+ D T++ +E++ ++ D + EL+ +L
Sbjct: 2073 ADSVAKTNAVVKDPSKNKIIADADA----TVKNLEQEADRLIDKLKPIKELEDNLKKNIS 2128
Query: 259 EL 260
E+
Sbjct: 2129 EI 2130
>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
sapiens]
Length = 3122
Score = 34.7 bits (78), Expect = 0.087
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 145 LVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKA 204
L +++ P TAA ++A+++ N + L Q+T H+ + K+N NK
Sbjct: 2020 LGKLSAIPNDTAAKLQAVKDKARQANDTAKDVLA-----QITELHQNL--DGLKKNYNKL 2072
Query: 205 KDSLRK----VRTNSMNKLKKSKDTVSEDTIRLIEKQISQMAD--DTVAELDRHLAVKTK 258
DS+ K V+ S NK+ D T++ +E++ ++ D + EL+ +L
Sbjct: 2073 ADSVAKTNAVVKDPSKNKIIADADA----TVKNLEQEADRLIDKLKPIKELEDNLKKNIS 2128
Query: 259 EL 260
E+
Sbjct: 2129 EI 2130
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 34.7 bits (78), Expect = 0.087
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 208 LRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVK 256
L +++NS+++LKK+ + VS D+ R+ +K +D+ L R L +K
Sbjct: 486 LSALQSNSIHRLKKTWEDVSRDSFRIFQKLSEIFSDENNYSLSRELLIK 534
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 34.7 bits (78), Expect = 0.087
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 208 LRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVK 256
L +++NS+++LKK+ + VS D+ R+ +K +D+ L R L +K
Sbjct: 431 LSALQSNSIHRLKKTWEDVSRDSFRIFQKLSEIFSDENNYSLSRELLIK 479
>gi|110815815 centlein isoform 1 [Homo sapiens]
Length = 1406
Score = 33.5 bits (75), Expect = 0.19
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 72 VNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLAL- 130
+ + L+ED+ ++VN E + N +K + T S K+++ + +L +
Sbjct: 1143 ITMKRHLIEDLKFRQKVNLESNKSFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVA 1202
Query: 131 ----NQISQISMKSPQ---------LILVNMAS-----FPECTAAAIKAIRESGMNLNPE 172
+Q Q+ KS + +LV+ S E AA K ++E +
Sbjct: 1203 VKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEIETAASKQLQELALQSEQV 1262
Query: 173 VEGTLIRVPIPQVTREHREMLVK-LAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDT 230
+EG + + E VK LAK+ N R++R + K+KK++D T
Sbjct: 1263 LEGAQKTLLLANEKVEEFTTFVKALAKELQNDVHVVRRQIR--ELKKMKKNRDACKTST 1319
>gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo
sapiens]
Length = 1094
Score = 32.7 bits (73), Expect = 0.33
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 29/180 (16%)
Query: 9 RMVHPTFRNYLAASIRPV--SEVTLKTVHERQHGH--RQYMAYSAV---PVRHFATKKAK 61
R ++ TF +A V S V KT H +GH R+Y + + + F
Sbjct: 535 RFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQSKKKLNLFKLTPFMVNSVL 594
Query: 62 AKGKGQ-------SQTRVNINAALVEDIINLEEV-----NEEMKSVIEALKDNFNKTL-- 107
A+GKG +T N A+ E++ ++ V N + + V+ + N L
Sbjct: 595 AEGKGGFIRAKLVCKTLENFFASADEEL-TIDHVPIWCKNSQGQRVMVEQSEKLNGVLEA 653
Query: 108 -----NIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAI 162
N+R ++ +T DG L L Q+S+ S+ S I V+ A +CT A + +
Sbjct: 654 SRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAIFVDEAQ--DCTPAIMNIV 711
>gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo
sapiens]
Length = 1043
Score = 32.7 bits (73), Expect = 0.33
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 29/180 (16%)
Query: 9 RMVHPTFRNYLAASIRPV--SEVTLKTVHERQHGH--RQYMAYSAV---PVRHFATKKAK 61
R ++ TF +A V S V KT H +GH R+Y + + + F
Sbjct: 484 RFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQSKKKLNLFKLTPFMVNSVL 543
Query: 62 AKGKGQ-------SQTRVNINAALVEDIINLEEV-----NEEMKSVIEALKDNFNKTL-- 107
A+GKG +T N A+ E++ ++ V N + + V+ + N L
Sbjct: 544 AEGKGGFIRAKLVCKTLENFFASADEEL-TIDHVPIWCKNSQGQRVMVEQSEKLNGVLEA 602
Query: 108 -----NIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAI 162
N+R ++ +T DG L L Q+S+ S+ S I V+ A +CT A + +
Sbjct: 603 SRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAIFVDEAQ--DCTPAIMNIV 660
>gi|118582286 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
[Homo sapiens]
Length = 471
Score = 32.0 bits (71), Expect = 0.56
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 153 ECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKA-------- 204
+C AA+K + N EG + TRE R ++++ AK++ K
Sbjct: 107 QCALAALKDVH----NYLSHEEGHVAVFDATNTTRERRSLILQFAKEHGYKVFFIESICN 162
Query: 205 -----KDSLRKVRTNSMNKLKKSKDTVSEDTIRLIE-KQISQMADDTVAELDRHLA 254
+++R+V+ S + + ++ V ED ++ IE +++ D ELD HL+
Sbjct: 163 DPGIIAENIRQVKLGSPDYIDCDREKVLEDFLKRIECYEVNYQPLD--EELDSHLS 216
>gi|4503355 dedicator of cytokinesis 1 [Homo sapiens]
Length = 1865
Score = 31.2 bits (69), Expect = 0.96
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 16/134 (11%)
Query: 85 LEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLI 144
L +E M++ + LK+ K +R P SLD G + + +M S
Sbjct: 1590 LRPFHERMEACFKQLKEKVEKEYGVRIMPSSLD-----DRRGSRPRSMVRSFTMPS---- 1640
Query: 145 LVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKA 204
S + A++ ++ P +G + +P+ + H KL K + K
Sbjct: 1641 -----SSRPLSVASVSSLSSDSTPSRPGSDGFALEPLLPK--KMHSRSQDKLDKDDLEKE 1693
Query: 205 KDSLRKVRTNSMNK 218
K +K + NS ++
Sbjct: 1694 KKDKKKEKRNSKHQ 1707
>gi|21389505 janus kinase and microtubule interacting protein 1
isoform 2 [Homo sapiens]
Length = 626
Score = 30.8 bits (68), Expect = 1.3
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 155 TAAAIKAIRESGMNLNPEVEGTLIRVP-----IPQVTREHREMLVKLAKQNTNKAKDSLR 209
T +K + E +N + E L + I +TRE+ EM KL+ Q + K
Sbjct: 325 TEVQLKPLVEKNKRMNKKNEDLLQSIQRMEEKIKNLTRENVEMKEKLSAQASLK------ 378
Query: 210 KVRTNSMNKLKKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVK 256
R S+N L ++D + +RL + + DD E +R L K
Sbjct: 379 --RHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLERERLLRSK 423
>gi|150456473 janus kinase and microtubule interacting protein 1
isoform 1 [Homo sapiens]
Length = 831
Score = 30.8 bits (68), Expect = 1.3
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 155 TAAAIKAIRESGMNLNPEVEGTLIRVP-----IPQVTREHREMLVKLAKQNTNKAKDSLR 209
T +K + E +N + E L + I +TRE+ EM KL+ Q + K
Sbjct: 325 TEVQLKPLVEKNKRMNKKNEDLLQSIQRMEEKIKNLTRENVEMKEKLSAQASLK------ 378
Query: 210 KVRTNSMNKLKKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVK 256
R S+N L ++D + +RL + + DD E +R L K
Sbjct: 379 --RHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLERERLLRSK 423
>gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 [Homo
sapiens]
Length = 1288
Score = 30.4 bits (67), Expect = 1.6
Identities = 48/227 (21%), Positives = 102/227 (44%), Gaps = 19/227 (8%)
Query: 18 YLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAA 77
YL ++ + L T +++ SA + A A+ GK +++ + ++
Sbjct: 834 YLNVQVKELEANVLATAPDKKKQKLLEENVSAFKTEYDAV--AEKAGKVEAEVK-RLHNT 890
Query: 78 LVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQIS 137
+VE IN N ++K+ + L D NK L+ S + ++A+ TAD L Q +Q S
Sbjct: 891 IVE--IN----NHKLKAQQDKL-DKINKQLDECASAITKAQVAIKTADRNL---QKAQDS 940
Query: 138 MKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLA 197
+ + + + + A +K++ + + +P++ +EHR +L +L
Sbjct: 941 VLRTEKEIKDTEKEVDDLTAELKSLEDKAAEVVKNTNAA--EESLPEIQKEHRNLLQELK 998
Query: 198 KQNTNKAKDSLRKVRTNSMNKLKKSKDTVSE--DTIRLIEKQISQMA 242
N + +L+K + KL++ ++E I+ K+IS+++
Sbjct: 999 VIQEN--EHALQKDALSIKLKLEQIDGHIAEHNSKIKYWHKEISKIS 1043
>gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 [Homo
sapiens]
Length = 1288
Score = 30.4 bits (67), Expect = 1.6
Identities = 48/227 (21%), Positives = 102/227 (44%), Gaps = 19/227 (8%)
Query: 18 YLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAA 77
YL ++ + L T +++ SA + A A+ GK +++ + ++
Sbjct: 834 YLNVQVKELEANVLATAPDKKKQKLLEENVSAFKTEYDAV--AEKAGKVEAEVK-RLHNT 890
Query: 78 LVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQIS 137
+VE IN N ++K+ + L D NK L+ S + ++A+ TAD L Q +Q S
Sbjct: 891 IVE--IN----NHKLKAQQDKL-DKINKQLDECASAITKAQVAIKTADRNL---QKAQDS 940
Query: 138 MKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLA 197
+ + + + + A +K++ + + +P++ +EHR +L +L
Sbjct: 941 VLRTEKEIKDTEKEVDDLTAELKSLEDKAAEVVKNTNAA--EESLPEIQKEHRNLLQELK 998
Query: 198 KQNTNKAKDSLRKVRTNSMNKLKKSKDTVSE--DTIRLIEKQISQMA 242
N + +L+K + KL++ ++E I+ K+IS+++
Sbjct: 999 VIQEN--EHALQKDALSIKLKLEQIDGHIAEHNSKIKYWHKEISKIS 1043
>gi|157785649 leucine-rich repeats and IQ motif containing 3 [Homo
sapiens]
Length = 624
Score = 30.0 bits (66), Expect = 2.1
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 178 IRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQ 237
+RV + + + + KL ++N ++SLR+V N N L+K+++ + L K+
Sbjct: 453 VRVAVNEHLNQKKYATQKLIEENKETIQNSLRQVWQNRFNYLEKARERKA-----LFLKE 507
Query: 238 ISQMADD--TVAELDRHLAVKTKELL 261
SQ A + V L+ + T+ LL
Sbjct: 508 KSQKASERLLVQNLNNERTLLTRGLL 533
>gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]
Length = 1872
Score = 29.6 bits (65), Expect = 2.8
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 181 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ 240
P + REH E++VK + N K SL ++ + SM L K ED + +EK I+
Sbjct: 1440 PSREEFREHLELIVKNSA-TYNGPKHSLTQI-SQSMLDLCDEKLKEKEDKLARLEKAINP 1497
Query: 241 MADD 244
+ DD
Sbjct: 1498 LLDD 1501
>gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]
Length = 1893
Score = 29.6 bits (65), Expect = 2.8
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 181 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ 240
P + REH E++VK + N K SL ++ + SM L K ED + +EK I+
Sbjct: 1461 PSREEFREHLELIVKNSA-TYNGPKHSLTQI-SQSMLDLCDEKLKEKEDKLARLEKAINP 1518
Query: 241 MADD 244
+ DD
Sbjct: 1519 LLDD 1522
>gi|24429572 TBP-associated factor RNA polymerase 1-like [Homo
sapiens]
Length = 1826
Score = 29.6 bits (65), Expect = 2.8
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 181 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ 240
P + REH E++VK + N K SL ++ + SM L K ED + +EK I+
Sbjct: 1459 PSREEFREHLELIVKNSA-TYNGPKHSLTQI-SQSMLDLCDEKLKEKEDKLARLEKAINP 1516
Query: 241 MADD 244
+ DD
Sbjct: 1517 LLDD 1520
>gi|169213020 PREDICTED: similar to ribosomal protein L24-like [Homo
sapiens]
Length = 187
Score = 29.3 bits (64), Expect = 3.6
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 188 EHREMLVKLAKQNTNKAKDSLRKVRTNS--------MNKLKKSKDTVSEDTIRLIEKQI 238
+HR L+K ++ NK D++++V MN+LKK+K+ I+ +++ I
Sbjct: 73 KHRNELIKYQRELWNKTIDAMKRVEEIKQKHQAKFIMNRLKKNKELQKVQDIKEVKQSI 131
>gi|89047474 PREDICTED: similar to ribosomal protein L24-like [Homo
sapiens]
Length = 187
Score = 29.3 bits (64), Expect = 3.6
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 188 EHREMLVKLAKQNTNKAKDSLRKVRTNS--------MNKLKKSKDTVSEDTIRLIEKQI 238
+HR L+K ++ NK D++++V MN+LKK+K+ I+ +++ I
Sbjct: 73 KHRNELIKYQRELWNKTIDAMKRVEEIKQKHQAKFIMNRLKKNKELQKVQDIKEVKQSI 131
>gi|27485363 PREDICTED: similar to ribosomal protein L24-like [Homo
sapiens]
Length = 187
Score = 29.3 bits (64), Expect = 3.6
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 188 EHREMLVKLAKQNTNKAKDSLRKVRTNS--------MNKLKKSKDTVSEDTIRLIEKQI 238
+HR L+K ++ NK D++++V MN+LKK+K+ I+ +++ I
Sbjct: 73 KHRNELIKYQRELWNKTIDAMKRVEEIKQKHQAKFIMNRLKKNKELQKVQDIKEVKQSI 131
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 29.3 bits (64), Expect = 3.6
Identities = 36/203 (17%), Positives = 89/203 (43%), Gaps = 18/203 (8%)
Query: 58 KKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLD 117
K +++ K Q Q + A +E + LE+ N+E+++ I+AL+ + + +
Sbjct: 95 KLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQALRQ--KQASHAQLGDAYDQ 152
Query: 118 KIAVVTADGKLALNQISQISMKSPQL---------ILVNMASFPECTAAAIKAIRESGMN 168
+I + A ++ ++ +Q+ + S L A + T AAI+A+R+
Sbjct: 153 EIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEARLRDDTEAAIRALRKD--- 209
Query: 169 LNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKS-KDTVS 227
E +L++V + + + ++ + L + + D L +++ + + +K T
Sbjct: 210 ---IEEASLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHITVERKDYLKTDI 266
Query: 228 EDTIRLIEKQISQMADDTVAELD 250
++ I Q+ +D + + +
Sbjct: 267 STALKEIRSQLESHSDQNMHQAE 289
>gi|24308039 hypothetical protein LOC23376 [Homo sapiens]
Length = 794
Score = 29.3 bits (64), Expect = 3.6
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 182 IPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSE--DTIRLIEKQIS 239
I + + + E++ + +T A + RK +K ++ VS + IRL EK +
Sbjct: 506 IKPLNKTYLEVVRSVFMSSTTSASGTGRK------RTIKDLQEEVSNLYNNIRLFEKGMK 559
Query: 240 QMADDTVAELDRHL 253
ADDT A L +HL
Sbjct: 560 FFADDTQAALTKHL 573
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 29.3 bits (64), Expect = 3.6
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 171 PEVEGTLIRVP-IPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSED 229
PE+E ++ VP +P+V++E V K+NT K + V S +L + SED
Sbjct: 1006 PEIEINMLTVPHVPKVSQEGS---VDEVKENTEKMQQGKDDVSLLSEGQLAEQSLASSED 1062
Query: 230 TIRLIEKQISQMADDTVA 247
+ E ++ +D A
Sbjct: 1063 ETEITEDLEPEVEEDMSA 1080
>gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]
Length = 971
Score = 29.3 bits (64), Expect = 3.6
Identities = 47/248 (18%), Positives = 100/248 (40%), Gaps = 44/248 (17%)
Query: 19 LAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAAL 78
L + ++E KT+ E H +MA AV KK + ++++
Sbjct: 348 LEEEVTQLNEAHSKTLEELAWKH--HMAIEAVHSNAIRDKK---------KLQMDLEEQH 396
Query: 79 VEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSP-GSLDKI------AVVTADGKLALN 131
+D +NLEE +++ +E LK+ LN G L + + +A+G +A
Sbjct: 397 NKDKLNLEEDKNQLQQELENLKEVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASL 456
Query: 132 QISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHRE 191
Q SQ +++ + T ++K +++ +N+ E+E Q ++H E
Sbjct: 457 QDSQERLQNEL----------DLTKDSLKETKDALLNVEGELE---------QERQQHEE 497
Query: 192 MLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQMADDTVAELDR 251
+ + ++ K + K + + ++ +L E+ Q +D + + +
Sbjct: 498 TIAAMKEEEKLKVDKMAHDLEI-------KWTENLRQECSKLREELRLQHEEDKKSAMSQ 550
Query: 252 HLAVKTKE 259
L +K +E
Sbjct: 551 LLQLKDRE 558
>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
Length = 1140
Score = 29.3 bits (64), Expect = 3.6
Identities = 47/248 (18%), Positives = 100/248 (40%), Gaps = 44/248 (17%)
Query: 19 LAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAAL 78
L + ++E KT+ E H +MA AV KK + ++++
Sbjct: 468 LEEEVTQLNEAHSKTLEELAWKH--HMAIEAVHSNAIRDKK---------KLQMDLEEQH 516
Query: 79 VEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSP-GSLDKI------AVVTADGKLALN 131
+D +NLEE +++ +E LK+ LN G L + + +A+G +A
Sbjct: 517 NKDKLNLEEDKNQLQQELENLKEVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASL 576
Query: 132 QISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHRE 191
Q SQ +++ + T ++K +++ +N+ E+E Q ++H E
Sbjct: 577 QDSQERLQNEL----------DLTKDSLKETKDALLNVEGELE---------QERQQHEE 617
Query: 192 MLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQMADDTVAELDR 251
+ + ++ K + K + + ++ +L E+ Q +D + + +
Sbjct: 618 TIAAMKEEEKLKVDKMAHDLEI-------KWTENLRQECSKLREELRLQHEEDKKSAMSQ 670
Query: 252 HLAVKTKE 259
L +K +E
Sbjct: 671 LLQLKDRE 678
>gi|82880656 coiled-coil domain containing 46 isoform a [Homo
sapiens]
Length = 955
Score = 29.3 bits (64), Expect = 3.6
Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 136 ISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVK 195
+S+ +P+ L +SF + + IRE +++ ++ ++ ++H + K
Sbjct: 228 VSLMTPKFSLRKSSSFHD--DHFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQK 285
Query: 196 LAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQ----------ISQMADDT 245
+ ++ N+ ++ + L +SK +E+TIR +EK+ I + +D
Sbjct: 286 ILERKNNEIEE---------LKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQ 336
Query: 246 VAELDRHLAVKTKEL 260
+AEL + T+ L
Sbjct: 337 IAELKKICEQSTESL 351
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.128 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,098,234
Number of Sequences: 37866
Number of extensions: 298408
Number of successful extensions: 1357
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1338
Number of HSP's gapped (non-prelim): 47
length of query: 262
length of database: 18,247,518
effective HSP length: 100
effective length of query: 162
effective length of database: 14,460,918
effective search space: 2342668716
effective search space used: 2342668716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.