Guide to the Human Genome
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Name: LOC344065 Sequence: fasta or formatted (538aa) NCBI GI: 239741664
Description:

PREDICTED: similar to zinc finger protein 570

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [522aa] PREDICTED: similar to zinc finger protein 570
alt mRNA [538aa] PREDICTED: similar to zinc finger protein 570
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         27           2
 C cysteine            4.6         25           1
 D aspartate           2.8         15           1
 E glutamate          11.0         59           3
 F phenylalanine       3.2         17           1
 G glycine             5.9         32           1
 H histidine           6.7         36           2
 I isoleucine          3.9         21           2
 K lysine              8.6         46           2
 L leucine             6.9         37           2
 M methionine          0.6          3           1
 N asparagine          3.3         18           2
 P proline             4.3         23           1
 Q glutamine           6.7         36           3
 R arginine            5.2         28           2
 S serine              9.1         49           3
 T threonine           5.9         32           1
 V valine              2.8         15           1
 W tryptophan          0.6          3           1
 Y tyrosine            3.0         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger protein 570 [Homo... 
LOC344065             1.000   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.960   PREDICTED: similar to zinc finger protein 570 [Homo...
ZNF184                0.433   zinc finger protein 184 
ZNF570                0.430   zinc finger protein 570 
ZNF470                0.417   zinc finger protein 470 
ZNF286A               0.414   zinc finger protein 286 
ZNF286A               0.414   zinc finger protein 286 
ZNF135                0.414   zinc finger protein 135 
ZNF251                0.413   zinc finger protein 251 
LOC647678             0.403   PREDICTED: similar to zinc finger protein 347 [Homo...
ZNF583                0.403   zinc finger protein 583 
ZNF583                0.403   zinc finger protein 583 
ZNF583                0.403   zinc finger protein 583 
ZNF79                 0.401   zinc finger protein 79 
LOC647678             0.400   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.400   PREDICTED: hypothetical protein XP_002343697 
ZNF167                0.400   zinc finger protein 167 isoform 1 
ZNF454                0.398   zinc finger protein 454 
ZNF287                0.397   zinc finger protein 287 
ZNF543                0.395   zinc finger protein 543 
ZNF568                0.394   zinc finger protein 568 
ZNF16                 0.393   zinc finger protein 16 
ZNF16                 0.393   zinc finger protein 16 
ZFP2                  0.393   zinc finger protein 2 homolog 
ZNF852                0.391   PREDICTED: zinc finger protein 852 
ZNF852                0.391   PREDICTED: zinc finger protein 852 
ZNF420                0.390   zinc finger protein 420 
ZNF345                0.389   zinc finger protein 345 
ZNF665                0.389   zinc finger protein 665 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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