Guide to the Human Genome
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Name: LOC100287477 Sequence: fasta or formatted (561aa) NCBI GI: 239746339
Description:

PREDICTED: hypothetical protein XP_002343697

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         23           1
 C cysteine            5.9         33           1
 D aspartate           2.7         15           2
 E glutamate           7.1         40           2
 F phenylalanine       2.7         15           1
 G glycine             8.2         46           1
 H histidine           8.6         48           2
 I isoleucine          3.9         22           1
 K lysine              8.6         48           2
 L leucine             4.6         26           3
 M methionine          0.7          4           1
 N asparagine          1.4          8           1
 P proline             3.6         20           1
 Q glutamine           7.3         41           1
 R arginine            5.0         28           2
 S serine              9.6         54           3
 T threonine           9.3         52           3
 V valine              2.7         15           2
 W tryptophan          0.4          2           1
 Y tyrosine            3.7         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343697 
LOC647678             1.000   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC647678             0.997   PREDICTED: similar to zinc finger protein 347 [Homo...
ZNF135                0.514   zinc finger protein 135 
ZNF420                0.500   zinc finger protein 420 
ZNF184                0.499   zinc finger protein 184 
ZNF665                0.494   zinc finger protein 665 
ZNF347                0.490   zinc finger protein 347 
ZNF470                0.482   zinc finger protein 470 
ZNF160                0.481   zinc finger protein 160 
ZNF160                0.481   zinc finger protein 160 
ZNF160                0.481   zinc finger protein 160 
ZNF429                0.472   zinc finger protein 429 
ZNF345                0.472   zinc finger protein 345 
ZNF658                0.472   zinc finger protein 658 
LOC100287429          0.469   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.469   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.469   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.469   zinc finger protein 84 
ZNF84                 0.469   zinc finger protein 84 
ZNF30                 0.468   zinc finger protein 30 isoform b 
ZNF30                 0.468   zinc finger protein 30 isoform a 
ZNF30                 0.468   zinc finger protein 30 isoform a 
ZNF595                0.465   zinc finger protein 595 
ZNF678                0.465   zinc finger protein 678 
ZNF43                 0.463   zinc finger protein 43 
ZNF85                 0.463   zinc finger protein 85 
ZNF93                 0.462   zinc finger protein 93 
ZNF23                 0.462   zinc finger protein 23 
ZNF208                0.461   zinc finger protein 208 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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