Guide to the Human Genome
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Name: ZNF180 Sequence: fasta or formatted (692aa) NCBI GI: 190570172
Description:

zinc finger protein 180

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         23           2
 C cysteine            5.3         37           1
 D aspartate           2.9         20           2
 E glutamate           9.2         64           2
 F phenylalanine       4.3         30           1
 G glycine             5.9         41           3
 H histidine           6.1         42           1
 I isoleucine          4.2         29           3
 K lysine              7.9         55           2
 L leucine             5.2         36           2
 M methionine          0.6          4           1
 N asparagine          4.0         28           2
 P proline             4.0         28           2
 Q glutamine           7.8         54           2
 R arginine            4.9         34           1
 S serine             10.0         69           3
 T threonine           6.6         46           1
 V valine              4.0         28           2
 W tryptophan          0.9          6           1
 Y tyrosine            2.6         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 180 
ZNF606                0.416   zinc finger protein 606 
ZNF135                0.404   zinc finger protein 135 
ZNF544                0.396   zinc finger protein 544 
ZNF420                0.388   zinc finger protein 420 
ZNF184                0.377   zinc finger protein 184 
ZNF569                0.375   zinc finger protein 569 
ZNF568                0.375   zinc finger protein 568 
ZNF182                0.365   zinc finger protein 21 isoform 1 
ZNF624                0.364   zinc finger protein 624 
ZNF182                0.364   zinc finger protein 21 isoform 2 
LOC100287429          0.363   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.363   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.363   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.363   zinc finger protein 84 
ZNF84                 0.363   zinc finger protein 84 
ZNF665                0.363   zinc finger protein 665 
ZNF658                0.361   zinc finger protein 658 
ZNF470                0.358   zinc finger protein 470 
ZNF12                 0.353   zinc finger protein 12 isoform b 
ZNF268                0.353   zinc finger protein 268 
ZNF329                0.353   zinc finger protein 329 
ZNF471                0.353   zinc finger protein 471 
ZNF12                 0.352   zinc finger protein 12 isoform a 
ZNF16                 0.351   zinc finger protein 16 
ZNF16                 0.351   zinc finger protein 16 
ZNF347                0.349   zinc finger protein 347 
ZFP2                  0.348   zinc finger protein 2 homolog 
ZNF571                0.348   zinc finger protein 571 
ZNF546                0.348   zinc finger protein 546 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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