Guide to the Human Genome
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Name: ZSCAN2 Sequence: fasta or formatted (614aa) NCBI GI: 63176661
Description:

zinc finger protein 29 isoform 1

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [150aa] zinc finger protein 29 isoform 2
alt prot [146aa] zinc finger protein 29 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9         18           3
 C cysteine            5.0         31           1
 D aspartate           3.1         19           2
 E glutamate          10.1         62           3
 F phenylalanine       3.6         22           1
 G glycine             8.5         52           2
 H histidine           5.5         34           1
 I isoleucine          3.6         22           2
 K lysine              6.7         41           1
 L leucine             5.7         35           2
 M methionine          2.0         12           2
 N asparagine          2.6         16           1
 P proline             5.0         31           1
 Q glutamine           6.5         40           1
 R arginine            6.2         38           2
 S serine             10.3         63           3
 T threonine           6.2         38           2
 V valine              2.9         18           2
 W tryptophan          0.8          5           1
 Y tyrosine            2.8         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 29 isoform 1 
ZNF568                0.417   zinc finger protein 568 
ZNF16                 0.415   zinc finger protein 16 
ZNF16                 0.415   zinc finger protein 16 
ZNF665                0.415   zinc finger protein 665 
ZNF135                0.414   zinc finger protein 135 
LOC100287429          0.413   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.413   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.413   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.413   zinc finger protein 84 
ZNF84                 0.413   zinc finger protein 84 
ZNF23                 0.408   zinc finger protein 23 
ZNF160                0.408   zinc finger protein 160 
ZNF160                0.408   zinc finger protein 160 
ZNF160                0.408   zinc finger protein 160 
ZNF227                0.407   zinc finger protein 227 
ZNF420                0.403   zinc finger protein 420 
ZNF182                0.403   zinc finger protein 21 isoform 2 
ZNF182                0.403   zinc finger protein 21 isoform 1 
ZNF345                0.402   zinc finger protein 345 
ZNF229                0.402   zinc finger protein 229 
ZNF569                0.402   zinc finger protein 569 
ZNF226                0.401   zinc finger protein 226 isoform a 
ZNF226                0.401   zinc finger protein 226 isoform a 
ZNF45                 0.401   zinc finger protein 45 
LOC647678             0.400   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.400   PREDICTED: hypothetical protein XP_002343697 
ZNF268                0.400   zinc finger protein 268 
ZNF658                0.399   zinc finger protein 658 
ZNF184                0.399   zinc finger protein 184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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