Guide to the Human Genome
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Name: LOC344065 Sequence: fasta or formatted (522aa) NCBI GI: 113413886
Description:

PREDICTED: similar to zinc finger protein 570

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [538aa] PREDICTED: similar to zinc finger protein 570
alt prot [538aa] PREDICTED: similar to zinc finger protein 570
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         26           2
 C cysteine            4.8         25           1
 D aspartate           2.9         15           1
 E glutamate          10.7         56           3
 F phenylalanine       3.3         17           1
 G glycine             5.9         31           1
 H histidine           6.7         35           2
 I isoleucine          4.0         21           2
 K lysine              8.6         45           2
 L leucine             6.7         35           2
 M methionine          0.6          3           1
 N asparagine          3.3         17           2
 P proline             4.0         21           1
 Q glutamine           6.9         36           3
 R arginine            5.2         27           2
 S serine              9.4         49           3
 T threonine           5.9         31           1
 V valine              2.7         14           1
 W tryptophan          0.6          3           1
 Y tyrosine            2.9         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger protein 570 [Homo... 
LOC344065             0.991   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.991   PREDICTED: similar to zinc finger protein 570 [Homo...
ZNF184                0.446   zinc finger protein 184 
ZNF570                0.444   zinc finger protein 570 
ZNF470                0.431   zinc finger protein 470 
ZNF286A               0.428   zinc finger protein 286 
ZNF286A               0.428   zinc finger protein 286 
ZNF135                0.427   zinc finger protein 135 
ZNF251                0.426   zinc finger protein 251 
LOC647678             0.416   PREDICTED: similar to zinc finger protein 347 [Homo...
ZNF583                0.416   zinc finger protein 583 
ZNF583                0.416   zinc finger protein 583 
ZNF583                0.416   zinc finger protein 583 
ZNF79                 0.414   zinc finger protein 79 
LOC647678             0.413   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.413   PREDICTED: hypothetical protein XP_002343697 
ZNF167                0.413   zinc finger protein 167 isoform 1 
ZNF454                0.411   zinc finger protein 454 
ZNF287                0.409   zinc finger protein 287 
ZNF543                0.407   zinc finger protein 543 
ZNF568                0.406   zinc finger protein 568 
ZNF16                 0.405   zinc finger protein 16 
ZNF16                 0.405   zinc finger protein 16 
ZFP2                  0.405   zinc finger protein 2 homolog 
ZNF852                0.404   PREDICTED: zinc finger protein 852 
ZNF852                0.404   PREDICTED: zinc finger protein 852 
ZNF420                0.403   zinc finger protein 420 
ZNF345                0.402   zinc finger protein 345 
ZNF665                0.402   zinc finger protein 665 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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