Search of human proteins with 20127607

Search of human proteins with 20127607

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|20127607 hypothetical protein LOC63894 [Homo sapiens]
         (493 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20127607 hypothetical protein LOC63894 [Homo sapiens]              988   0.0  
gi|17978479 vacuolar protein sorting 16 isoform 1 [Homo sapiens]       48   2e-05
gi|17978481 vacuolar protein sorting 16 isoform 3 [Homo sapiens]       48   2e-05
gi|61743930 zinc finger and BTB domain containing 41 [Homo sapiens]    35   0.20 
gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]    35   0.20 
gi|55741677 SET domain containing 1A [Homo sapiens]                    34   0.27 
gi|7661950 SH2 domain binding protein 1 [Homo sapiens]                 33   0.45 
gi|189011568 adenomatous polyposis coli [Homo sapiens]                 33   0.59 
gi|189011566 adenomatous polyposis coli [Homo sapiens]                 33   0.59 
gi|53759122 adenomatous polyposis coli [Homo sapiens]                  33   0.59 
gi|16975496 cortactin binding protein 2 [Homo sapiens]                 32   1.3  
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora...    31   2.3  
gi|85861202 carcinoembryonic antigen-related cell adhesion molec...    31   2.3  
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]           31   2.9  
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]         31   2.9  
gi|11056054 tribbles homolog 2 [Homo sapiens]                          30   5.0  
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]           30   5.0  
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...    30   5.0  
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa...    30   5.0  
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]                  30   5.0  
gi|21361891 SH2 domain containing 4A [Homo sapiens]                    30   6.6  
gi|4503257 death-domain associated protein isoform a [Homo sapiens]    29   8.6  
gi|215422388 death-domain associated protein isoform a [Homo sap...    29   8.6  
gi|215422366 death-domain associated protein isoform b [Homo sap...    29   8.6  
gi|32171205 EF-hand domain family, member A2 [Homo sapiens]            29   8.6  
gi|156104874 envoplakin [Homo sapiens]                                 29   8.6  
gi|42476169 Paf1, RNA polymerase II associated factor, homolog [...    29   8.6  
gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]             29   8.6  

>gi|20127607 hypothetical protein LOC63894 [Homo sapiens]
          Length = 493

 Score =  988 bits (2553), Expect = 0.0
 Identities = 493/493 (100%), Positives = 493/493 (100%)

Query: 1   MNRTKGDEEEYWNSSKFKAFTFDDEDDELSQLKESKRAVNSLRDFVDDDDDDDLERVSWS 60
           MNRTKGDEEEYWNSSKFKAFTFDDEDDELSQLKESKRAVNSLRDFVDDDDDDDLERVSWS
Sbjct: 1   MNRTKGDEEEYWNSSKFKAFTFDDEDDELSQLKESKRAVNSLRDFVDDDDDDDLERVSWS 60

Query: 61  GEPVGSISWSIRETAGNSGSTHEGREQLKSRNSFSSYAQLPKPTSTYSLSSFFRGRTRPG 120
           GEPVGSISWSIRETAGNSGSTHEGREQLKSRNSFSSYAQLPKPTSTYSLSSFFRGRTRPG
Sbjct: 61  GEPVGSISWSIRETAGNSGSTHEGREQLKSRNSFSSYAQLPKPTSTYSLSSFFRGRTRPG 120

Query: 121 SFQSLSDALSDTPAKSYAPELGRPKGEYRDYSNDWSPSDTVRRLRKGKVCSLERFRSLQD 180
           SFQSLSDALSDTPAKSYAPELGRPKGEYRDYSNDWSPSDTVRRLRKGKVCSLERFRSLQD
Sbjct: 121 SFQSLSDALSDTPAKSYAPELGRPKGEYRDYSNDWSPSDTVRRLRKGKVCSLERFRSLQD 180

Query: 181 KLQLLEEAVSMHDGNVITAVLIFLKRTLSKEILFRELEVRQVALRHLIHFLKEIGDQKLL 240
           KLQLLEEAVSMHDGNVITAVLIFLKRTLSKEILFRELEVRQVALRHLIHFLKEIGDQKLL
Sbjct: 181 KLQLLEEAVSMHDGNVITAVLIFLKRTLSKEILFRELEVRQVALRHLIHFLKEIGDQKLL 240

Query: 241 LDLFRFLDRTEELALSHYREHLNIQDPDKRKEFLKTCVGLPFSAEDSAHIQDHYTLLERQ 300
           LDLFRFLDRTEELALSHYREHLNIQDPDKRKEFLKTCVGLPFSAEDSAHIQDHYTLLERQ
Sbjct: 241 LDLFRFLDRTEELALSHYREHLNIQDPDKRKEFLKTCVGLPFSAEDSAHIQDHYTLLERQ 300

Query: 301 IIIEANDRHLESAGQTEIFRKHPRKASILNMPLVTTLFYSCFYHYTEAEGTFSSPVNLKK 360
           IIIEANDRHLESAGQTEIFRKHPRKASILNMPLVTTLFYSCFYHYTEAEGTFSSPVNLKK
Sbjct: 301 IIIEANDRHLESAGQTEIFRKHPRKASILNMPLVTTLFYSCFYHYTEAEGTFSSPVNLKK 360

Query: 361 TFKIPDKQYVLTALAARAKLRAWNDVDALFTTKNWLGYTKKRAPIGFHRVVEILHKNNAP 420
           TFKIPDKQYVLTALAARAKLRAWNDVDALFTTKNWLGYTKKRAPIGFHRVVEILHKNNAP
Sbjct: 361 TFKIPDKQYVLTALAARAKLRAWNDVDALFTTKNWLGYTKKRAPIGFHRVVEILHKNNAP 420

Query: 421 VQILQEYVNLVEDVDTKLNLATKFKCHDVVIDTYRDLKDRQQLLAYRSKVDKGSAEEEKI 480
           VQILQEYVNLVEDVDTKLNLATKFKCHDVVIDTYRDLKDRQQLLAYRSKVDKGSAEEEKI
Sbjct: 421 VQILQEYVNLVEDVDTKLNLATKFKCHDVVIDTYRDLKDRQQLLAYRSKVDKGSAEEEKI 480

Query: 481 DALLSSSQIRWKN 493
           DALLSSSQIRWKN
Sbjct: 481 DALLSSSQIRWKN 493


>gi|17978479 vacuolar protein sorting 16 isoform 1 [Homo sapiens]
          Length = 839

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 74/311 (23%), Positives = 121/311 (38%), Gaps = 63/311 (20%)

Query: 123 QSLSDALSDTPAKSYAPELGRPKG-----------EYRDYSNDWSPSDTVRRLRKGKVCS 171
           ++++  L DTP  SY+    R  G           EY   S +  P   + ++++ K+  
Sbjct: 505 RAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVP--LLLKMKRSKLA- 561

Query: 172 LERFRSLQDKLQLLEEAVSMHDGNVITAVLIFLKRTLSKEILFRELEVRQVALRHLIHFL 231
                        L +A+   D +++  VL+ LK  L++   F  L  + +AL     F 
Sbjct: 562 -------------LSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFC 608

Query: 232 KEIGDQKLLLDLFRFLDRTEELALSHYREHLNIQDP-DKRKEFLKTCVGLPFSAED---S 287
           K   + + L DL+   D  +EL   H R     ++  + R   L+T     + A++   +
Sbjct: 609 KH-QELETLKDLYNQDDNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAA 667

Query: 288 AHIQDHYTLLERQIIIEANDRHLESAGQTEIFRKHPRKASILNMPLVTTLFYSCFYHYTE 347
              +D   LL  Q  +E      E  GQ      H           VTTL      H   
Sbjct: 668 KATEDQMRLLRLQRRLED-----ELGGQFLDLSLHDT---------VTTLILGG--HNKR 711

Query: 348 AEGTFSSPVNLKKTFKIPDKQYVLTALAARAKLRAWNDVDALFTTKNWLGYTKKRAPIGF 407
           AE        L + F+IPDK+     L A A L  W +++    +        K++PIG+
Sbjct: 712 AE-------QLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKS--------KKSPIGY 756

Query: 408 HRVVEILHKNN 418
              VEI  K +
Sbjct: 757 LPFVEICMKQH 767


>gi|17978481 vacuolar protein sorting 16 isoform 3 [Homo sapiens]
          Length = 695

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 74/311 (23%), Positives = 121/311 (38%), Gaps = 63/311 (20%)

Query: 123 QSLSDALSDTPAKSYAPELGRPKG-----------EYRDYSNDWSPSDTVRRLRKGKVCS 171
           ++++  L DTP  SY+    R  G           EY   S +  P   + ++++ K+  
Sbjct: 361 RAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVP--LLLKMKRSKLA- 417

Query: 172 LERFRSLQDKLQLLEEAVSMHDGNVITAVLIFLKRTLSKEILFRELEVRQVALRHLIHFL 231
                        L +A+   D +++  VL+ LK  L++   F  L  + +AL     F 
Sbjct: 418 -------------LSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFC 464

Query: 232 KEIGDQKLLLDLFRFLDRTEELALSHYREHLNIQDP-DKRKEFLKTCVGLPFSAED---S 287
           K   + + L DL+   D  +EL   H R     ++  + R   L+T     + A++   +
Sbjct: 465 KH-QELETLKDLYNQDDNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAA 523

Query: 288 AHIQDHYTLLERQIIIEANDRHLESAGQTEIFRKHPRKASILNMPLVTTLFYSCFYHYTE 347
              +D   LL  Q  +E      E  GQ      H           VTTL      H   
Sbjct: 524 KATEDQMRLLRLQRRLED-----ELGGQFLDLSLHDT---------VTTLILGG--HNKR 567

Query: 348 AEGTFSSPVNLKKTFKIPDKQYVLTALAARAKLRAWNDVDALFTTKNWLGYTKKRAPIGF 407
           AE        L + F+IPDK+     L A A L  W +++    +        K++PIG+
Sbjct: 568 AE-------QLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKS--------KKSPIGY 612

Query: 408 HRVVEILHKNN 418
              VEI  K +
Sbjct: 613 LPFVEICMKQH 623


>gi|61743930 zinc finger and BTB domain containing 41 [Homo sapiens]
          Length = 909

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 4   TKGDEEEYWNSS-KFKAFTFDDEDDELSQLKESKRAVNSLRDFVDDDDDDDLERVSWSGE 62
           T  DE+E  + S       FD E  + +  ++     N+  D ++++  D+   +    E
Sbjct: 266 TSDDEQESGDGSDNLNQENFDKEKSDRNDSEDPGSEYNAEEDELEEEMSDEYSDIEEQSE 325

Query: 63  PVGSISWSIRETAGNSGSTHEGREQLKSRNSFSSYAQLPKPTSTYSLSSFFRGRTR 118
              + +    E   + G+ HEG   +  +NS     Q PK   T+     +   TR
Sbjct: 326 KDHNDAEEEPEAGDSVGNVHEGLTPVVIQNSNKKILQCPKCDKTFDRIGKYESHTR 381


>gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]
          Length = 731

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)

Query: 73  ETAGNSGSTHEGREQLKSRNSFSSYAQLPKPTST-------YSLSSF-FRGRTRPGSFQS 124
           E A NS S+HEG+E+  S+ + SS A  P  T T       + LS+     +      QS
Sbjct: 182 EAASNSDSSHEGQEE-SSKENVSSNAACPDHTPTPNDDGKSHELSNLRLENQLLRNEVQS 240

Query: 125 LSDALSD--TPAKSYAPELGRPKGEYRDYSNDWSPSDTVRRLRKGKVCSLERFRSLQD 180
           L+  ++     +K    EL + +     ++ D S SD + R  + +V  L    + +D
Sbjct: 241 LNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKD 298


>gi|55741677 SET domain containing 1A [Homo sapiens]
          Length = 1707

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 18/151 (11%)

Query: 5    KGDEEEYWNSSKF-KAFTFDDEDDELSQLKESKRAVNSLRDFVDDDDDDDLERVSWS--- 60
            K DEE      K  K+F  D E +E SQ  ES    +   D  D++D+D  E V  +   
Sbjct: 943  KRDEERGKTQGKHRKSFALDSEGEEASQ--ESSSEKDEEDDEEDEEDEDREEAVDTTKKE 1000

Query: 61   -----GEPVGSISWS----IRETAGNSGSTHEGREQLKSRNSFSSYAQLPKPTSTYSLSS 111
                 GE   S S S      ++ G + ST +      S +S SS +     +S+ S  S
Sbjct: 1001 TEVSDGEDEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSES 1060

Query: 112  FFRG---RTRPGSFQSLSDALSDTPAKSYAP 139
                     RP +  S S    + P  + AP
Sbjct: 1061 SSEDEEEEERPAALPSASPPPREVPVPTPAP 1091


>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
          Length = 1173

 Score = 33.5 bits (75), Expect = 0.45
 Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 17/152 (11%)

Query: 16   KFKAFTFDDEDDELSQLKESKRAVNS-LRDFVDDDDDDDLERVSWSGEPVGSISWSIRET 74
            +F  F  DD DD+L   K+ KR   S      +D++  + ++      P G       E 
Sbjct: 916  EFDEFVNDDTDDDLPISKKKKRRKGSGSEQEGEDEEGGERKKKKRRRHPKG-------EE 968

Query: 75   AGNSGSTHEGREQLKSRNSFSSYAQLPKPTSTYSLSSFFRGRTRPGSFQSLSDALSDTPA 134
              +   T  G +  K R   +   + PKP     L    +G+ +  +  S SD  SD   
Sbjct: 969  GSDDDETENGPKPKKRRPPKAEKKKAPKPE---RLPPSMKGKIKSKAIISSSDDSSDEDK 1025

Query: 135  KSYAPELGRPKGEYRDYSNDWSPSDTVRRLRK 166
               A E G P+      SN  S SD   + +K
Sbjct: 1026 LKIADE-GHPRN-----SNSNSDSDEDEQRKK 1051


>gi|189011568 adenomatous polyposis coli [Homo sapiens]
          Length = 2843

 Score = 33.1 bits (74), Expect = 0.59
 Identities = 12/26 (46%), Positives = 21/26 (80%)

Query: 30   SQLKESKRAVNSLRDFVDDDDDDDLE 55
            +Q KE+++ ++S +D +DD DDDD+E
Sbjct: 1548 NQEKEAEKTIDSEKDLLDDSDDDDIE 1573


>gi|189011566 adenomatous polyposis coli [Homo sapiens]
          Length = 2843

 Score = 33.1 bits (74), Expect = 0.59
 Identities = 12/26 (46%), Positives = 21/26 (80%)

Query: 30   SQLKESKRAVNSLRDFVDDDDDDDLE 55
            +Q KE+++ ++S +D +DD DDDD+E
Sbjct: 1548 NQEKEAEKTIDSEKDLLDDSDDDDIE 1573


>gi|53759122 adenomatous polyposis coli [Homo sapiens]
          Length = 2843

 Score = 33.1 bits (74), Expect = 0.59
 Identities = 12/26 (46%), Positives = 21/26 (80%)

Query: 30   SQLKESKRAVNSLRDFVDDDDDDDLE 55
            +Q KE+++ ++S +D +DD DDDD+E
Sbjct: 1548 NQEKEAEKTIDSEKDLLDDSDDDDIE 1573


>gi|16975496 cortactin binding protein 2 [Homo sapiens]
          Length = 1663

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 413  ILHKNNAPVQILQEYVNLVEDVDTKLNLATKFKCHDVVIDTYR-DLKDRQQLLAY----- 466
            + + +  P+Q++Q Y+ LVE     +    +    D ++      LK RQ    +     
Sbjct: 1099 VTYASMIPLQMMQNYLRLVEQYHNVIFHGPEGSLQDYIVHQLALCLKHRQMAAGFSCEIV 1158

Query: 467  RSKVDKGSAEEEKIDALLSSS 487
            R++VD G ++E+ +D  +SS+
Sbjct: 1159 RAEVDAGFSKEQLLDLFISSA 1179


>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 6 [Homo sapiens]
          Length = 1093

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 68  SWSIRETAGNSGSTHEGREQLKSRNSFSSYAQLPKPTSTYSLSSFFRGRTRPGSFQSLSD 127
           S S RE+ G   S+H    + K  +S    +     +S+ S SS   G    G FQ    
Sbjct: 292 SESSRESKGKKSSSHSLSHKGKKLSSGKGVSSFTSASSSSSSSSSSSG----GPFQPAVS 347

Query: 128 ALSDTPAKSYAPELGRPKGEYRDYSNDWSPS 158
           +L  +P  S  P+L +P  E   YS   +P+
Sbjct: 348 SLQSSPDFSAFPKLEQP--EEDKYSKPTAPA 376


>gi|85861202 carcinoembryonic antigen-related cell adhesion molecule
           16 [Homo sapiens]
          Length = 484

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 53  DLERVSWSGEPVGSISWSIRETAGNSGS-----THEGREQLKSRNSFSSYAQLPKPTSTY 107
           +L   SW   P  S+S+ +     ++G       H GRE ++   S      LP+ + TY
Sbjct: 106 ELLAYSWYAGPTLSVSYLVASYIVSTGDETPGPAHTGREAVRPDGSLDIQGILPRHSGTY 165

Query: 108 SLSSFFR 114
            L +F R
Sbjct: 166 ILQTFNR 172


>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
          Length = 330

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 18/170 (10%)

Query: 7   DEEEYWNSSKFKAFTFDDEDD-ELSQLKESKRAVNSLRDFVDDDDDDDLERVSWSGEPVG 65
           +E+E  + SK+K    +DEDD +LS+              +D  +++D  +   +     
Sbjct: 157 EEDEDEDLSKYKLDEDEDEDDADLSKYN------------LDASEEEDSNKKKSNRRSRS 204

Query: 66  SISWSIRETAGNSGSTHEGREQLKSRNSFSSYAQLPKPTSTYSLSSFFRGRTRPGSFQSL 125
               S   ++  S S    R + +SR+  SS +Q    +S+   S   R R       S 
Sbjct: 205 KSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERS---RSRGSKSRSSSR 261

Query: 126 SDALSDTPAK-SYAPELGRPKGEYRDYSNDWSPSDTVRRLRKGKVCSLER 174
           S   S +P K SY+     P+   R  S   S S   R+ R+ +  S ER
Sbjct: 262 SHRGSSSPRKRSYSSSSSSPE-RNRKRSRSRSSSSGDRKKRRTRSRSPER 310


>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
          Length = 953

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 66  SISWSIRETAGNSGSTHEGREQLKSRNSFSSYAQLPKPTSTYSLSSFFRGRTRPGSFQSL 125
           S S S    + +  S++ G    +SR+  SSY+     +S +  SSF   R+R  SF S 
Sbjct: 548 SASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRH--SSFSGSRSRSRSFSS- 604

Query: 126 SDALSDTPAKSYAPELGRPKGE 147
           S + S TP+  + P + R KGE
Sbjct: 605 SPSPSPTPS-PHRPSI-RTKGE 624


>gi|11056054 tribbles homolog 2 [Homo sapiens]
          Length = 343

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 108 SLSSFFRGRTRPGSFQSLSDALSDTPAKSYAPELGRP 144
           +++ + R R +   F+ LS   S  P++S++P LG P
Sbjct: 10  TIARYGRSRNKTQDFEELSSIRSAEPSQSFSPNLGSP 46


>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
          Length = 320

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 12/149 (8%)

Query: 7   DEEEYWNSSKFKAFTFDDEDD-ELSQLKESKRAVNSLRDFVDDDDDDDLERVSWSGEPVG 65
           +E+E  + SK+K    +DEDD +LS+                +++D + ++ +       
Sbjct: 157 EEDEDEDLSKYKLDEDEDEDDADLSKYNLD----------ASEEEDSNKKKSNRRSRSKS 206

Query: 66  SISWSIRETAGNSGSTHEGREQLKSRNSFSSYAQLPKPTSTYSLSSFFRGRTRPGSFQ-S 124
             S S   +  +S S+   R + +SR+S SS ++    +   S S   + R+   S + S
Sbjct: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGS 266

Query: 125 LSDALSDTPAKSYAPELGRPKGEYRDYSN 153
            S       + S +PE  R +   R  S+
Sbjct: 267 SSPRKRSYSSSSSSPERNRKRSRSRSSSS 295


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
           sapiens]
          Length = 1792

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 87  QLKSRNSFSSYAQLPKPTSTYSLSSFFRGRTRPGS--FQSLSDALSDTPAKSYA---PEL 141
           Q + R SFS  ++ P   S+YS SS+   ++R GS   +S S + S + ++SY+   P  
Sbjct: 676 QKERRRSFSR-SKSPYSGSSYSRSSYTYSKSRSGSTRSRSYSRSFSRSHSRSYSRSPPYP 734

Query: 142 GRPKGEYRDY 151
            R +G+ R+Y
Sbjct: 735 RRGRGKSRNY 744


>gi|84043963 eukaryotic translation initiation factor 5B [Homo
           sapiens]
          Length = 1220

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 12/102 (11%)

Query: 4   TKGDEEEYWNSSKFKAF------TFDDEDDELSQLKESKR---AVNSLRDFVDDDDDDDL 54
           T+ +EEE+ +  K K        +FDD D E  + K+SK    A   +  +   DDDDD 
Sbjct: 84  TENNEEEFTSKDKKKKGQKGKKQSFDDNDSEELEDKDSKSKKTAKPKVEMYSGSDDDDDF 143

Query: 55  ERVSWSGEPVGSISWSIRETAGNSGSTHEGREQLKSRNSFSS 96
            ++    +  G    S ++  G S    +  +++K R+  +S
Sbjct: 144 NKLPKKAK--GKAQKSNKKWDG-SEEDEDNSKKIKERSRINS 182


>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
          Length = 1726

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 14 SSKFKAFTFDDEDDELSQLKESKRAVNSLRDFVDDDDDDD 53
          + KF     DDE++E   L +     N L+ F++DDDD+D
Sbjct: 27 TKKFVEEEDDDEEEEEENLDDQDEQGN-LKGFINDDDDED 65


>gi|21361891 SH2 domain containing 4A [Homo sapiens]
          Length = 454

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 439 NLATKFKCHDVVIDTYRDLKDRQQLLAYRSKVDKGS-----AEEEKIDALLSSSQ 488
           +L TK + HD+     +  KD  + +A + ++++GS      EEEKI +L SSS+
Sbjct: 124 SLKTKSQYHDLQAPDNQQTKDIWKKVAEKEELEQGSRPAPTLEEEKIRSLSSSSR 178


>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
          Length = 740

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 23  DDEDDELSQLKESKRAVNSLRDFVDDDDDDDLERV 57
           DDEDDE S  +E +       +  D ++++DLE++
Sbjct: 436 DDEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQM 470


>gi|215422388 death-domain associated protein isoform a [Homo
           sapiens]
          Length = 740

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 23  DDEDDELSQLKESKRAVNSLRDFVDDDDDDDLERV 57
           DDEDDE S  +E +       +  D ++++DLE++
Sbjct: 436 DDEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQM 470


>gi|215422366 death-domain associated protein isoform b [Homo
           sapiens]
          Length = 752

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 23  DDEDDELSQLKESKRAVNSLRDFVDDDDDDDLERV 57
           DDEDDE S  +E +       +  D ++++DLE++
Sbjct: 448 DDEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQM 482


>gi|32171205 EF-hand domain family, member A2 [Homo sapiens]
          Length = 530

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 16/85 (18%)

Query: 227 LIHFLKEIGDQKLLL-DLFRFLDRTEELALSHYREHLNIQDPDKRKEFLKTCVGL-PFSA 284
           L+HF  + G  +L   D +RF+D              N+Q      EFL    G+   S 
Sbjct: 343 LVHFFGKKGKAELNFEDFYRFMD--------------NLQTEVLEIEFLSYSNGMNTISE 388

Query: 285 EDSAHIQDHYTLLERQIIIEANDRH 309
           ED AHI   YT +E   +   N R+
Sbjct: 389 EDFAHILLRYTNVENTSVFLENVRY 413


>gi|156104874 envoplakin [Homo sapiens]
          Length = 2033

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 53   DLERVSWSGEPVGSISWSIRETAGNSGSTHEG-REQLKSRNSFSSYAQLPKPTSTYSLSS 111
            D E V+ SG P G  S  +   +G   S     R +  S+  +  Y     P S ++L  
Sbjct: 1722 DWEEVTTSG-PCGEESVLLDRKSGKQYSIEAALRCRRISKEEYHLYKDGHLPISEFAL-- 1778

Query: 112  FFRGRTRPGSFQSLSDALSDTPAKSYAPE 140
               G T+P S  S+   +S +P  S AP+
Sbjct: 1779 LVAGETKPSSSLSIGSIISKSPLASPAPQ 1807


>gi|42476169 Paf1, RNA polymerase II associated factor, homolog
           [Homo sapiens]
          Length = 531

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 3   RTKGDEEEYWNSSKFKAFTFDDEDDELSQLKESKRAVNSLRDFVDDDDDDDLERVSWSGE 62
           R +GD +E   S K  +   +  +DE    ++ +    S  D  DD D DD +R    G 
Sbjct: 420 REEGDRDEA--SDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQG- 476

Query: 63  PVGSISWSIRETAGNSGSTHEGREQLKSRNSFSS 96
             GS + S    +G++G     R   +S + F S
Sbjct: 477 --GSDNDS---DSGSNGGGQRSRSHSRSASPFPS 505


>gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]
          Length = 4116

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 17/118 (14%)

Query: 226 HLIHFLKEI-GDQKLLLDLFRFLDRTEELALSHYREHLNIQDPDKRKEFLKTCVGLPFSA 284
           H+   + E+  + K L+ L  FL ++  + +   R  L  +D  +R EFL     LP+  
Sbjct: 707 HIADKVSEVPANTKELVSLIEFLKKSSAVTVFKLRRQL--RDASERLEFLMDYADLPYQI 764

Query: 285 ED--------SAHIQDHYTL------LERQIIIEANDRHLESAGQTEIFRKHPRKASI 328
           ED          H +D   +       E ++ +E   R LES  + E+      K ++
Sbjct: 765 EDIFDNSRNLLLHKRDQAEMDLIKRCSEFELRLEGYHRELESFRKREVMTTEEMKHNV 822


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,289,988
Number of Sequences: 37866
Number of extensions: 830774
Number of successful extensions: 3076
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3039
Number of HSP's gapped (non-prelim): 44
length of query: 493
length of database: 18,247,518
effective HSP length: 106
effective length of query: 387
effective length of database: 14,233,722
effective search space: 5508450414
effective search space used: 5508450414
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.