Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C14orf133 Sequence: fasta or formatted (493aa) NCBI GI: 20127607
Description:

hypothetical protein LOC63894

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         29           2
 C cysteine            0.8          4           1
 D aspartate           7.9         39           7
 E glutamate           7.5         37           3
 F phenylalanine       4.9         24           2
 G glycine             3.9         19           1
 H histidine           2.8         14           1
 I isoleucine          4.3         21           3
 K lysine              7.7         38           2
 L leucine            11.4         56           3
 M methionine          0.6          3           1
 N asparagine          3.7         18           2
 P proline             3.2         16           1
 Q glutamine           3.7         18           2
 R arginine            7.5         37           2
 S serine              9.1         45           3
 T threonine           5.5         27           2
 V valine              5.1         25           2
 W tryptophan          1.4          7           1
 Y tyrosine            3.2         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC63894 
VPS16                 0.024   vacuolar protein sorting 16 isoform 1 
VPS16                 0.024   vacuolar protein sorting 16 isoform 3 
ZBTB41                0.010   zinc finger and BTB domain containing 41 
GOLGA5                0.010   Golgi autoantigen, golgin subfamily a, 5 
SETD1A                0.009   SET domain containing 1A 
CTR9                  0.008   SH2 domain binding protein 1 
APC                   0.008   adenomatous polyposis coli 
APC                   0.008   adenomatous polyposis coli 
APC                   0.008   adenomatous polyposis coli 
CTTNBP2               0.007   cortactin binding protein 2 
MLLT6                 0.006   myeloid/lymphoid or mixed-lineage leukemia (trithora...
CEACAM16              0.006   carcinoembryonic antigen-related cell adhesion molec...
ZRANB2                0.006   zinc finger protein 265 isoform 1 
ZC3H18                0.006   zinc finger CCCH-type containing 18 
TRIB2                 0.005   tribbles homolog 2 
ZRANB2                0.005   zinc finger protein 265 isoform 2 
RBBP6                 0.005   retinoblastoma-binding protein 6 isoform 1 
EIF5B                 0.005   eukaryotic translation initiation factor 5B 
SUPT6H                0.005   suppressor of Ty 6 homolog 
SH2D4A                0.005   SH2 domain containing 4A 
DAXX                  0.004   death-domain associated protein isoform a 
DAXX                  0.004   death-domain associated protein isoform a 
DAXX                  0.004   death-domain associated protein isoform b 
EFHA2                 0.004   EF-hand domain family, member A2 
EVPL                  0.004   envoplakin 
PAF1                  0.004   Paf1, RNA polymerase II associated factor, homolog [...
DNAH3                 0.004   dynein, axonemal, heavy chain 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press