Search of human proteins with 199562283

Search of human proteins with 199562283

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|199562283 retrotransposon-like 1 [Homo sapiens]
         (1358 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|199562283 retrotransposon-like 1 [Homo sapiens]                   2756   0.0  
gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]      167   6e-41
gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]         94   7e-19
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]     85   5e-16
gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]       62   3e-09
gi|118200333 family with sequence similarity 127, member B isofo...    58   7e-08
gi|118200337 family with sequence similarity 127, member C [Homo...    58   7e-08
gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo sapi...    57   1e-07
gi|239757911 PREDICTED: similar to Family with sequence similari...    57   2e-07
gi|118200335 family with sequence similarity 127, member A [Homo...    55   5e-07
gi|126723547 hypothetical protein LOC57523 [Homo sapiens]              51   7e-06
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]     50   1e-05
gi|169217000 PREDICTED: similar to pro-pol protein [Homo sapiens]      44   0.001
gi|169216817 PREDICTED: similar to pro-pol protein [Homo sapiens]      44   0.001
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        43   0.002
gi|4502805 chromogranin A precursor [Homo sapiens]                     42   0.005
gi|82830424 gon-4-like isoform a [Homo sapiens]                        40   0.012
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]     40   0.020
gi|49355807 leucine zipper, down-regulated in cancer 1-like [Hom...    40   0.020
gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo ...    39   0.026
gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo ...    39   0.026
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]                39   0.044
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]                 39   0.044
gi|217330658 hypothetical protein LOC9812 [Homo sapiens]               39   0.044
gi|217330656 hypothetical protein LOC9812 [Homo sapiens]               39   0.044
gi|21237808 SWI/SNF-related matrix-associated actin-dependent re...    39   0.044
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re...    39   0.044
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r...    39   0.044
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d...    38   0.058
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ...    38   0.058

>gi|199562283 retrotransposon-like 1 [Homo sapiens]
          Length = 1358

 Score = 2756 bits (7145), Expect = 0.0
 Identities = 1358/1358 (100%), Positives = 1358/1358 (100%)

Query: 1    MIEPSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPS 60
            MIEPSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPS
Sbjct: 1    MIEPSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPS 60

Query: 61   GPLQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLSGASDR 120
            GPLQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLSGASDR
Sbjct: 61   GPLQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLSGASDR 120

Query: 121  MKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHSTAELMAMVRSIISLYFRMQDL 180
            MKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHSTAELMAMVRSIISLYFRMQDL
Sbjct: 121  MKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHSTAELMAMVRSIISLYFRMQDL 180

Query: 181  KEQQRVAEEILIKGINAGQLPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGY 240
            KEQQRVAEEILIKGINAGQLPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGY
Sbjct: 181  KEQQRVAEEILIKGINAGQLPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGY 240

Query: 241  VINHLSGLALEWAKALLQENSPLIGDFPAFLEAMSEVFEYRQALRVAEEAMFTIRQGGRS 300
            VINHLSGLALEWAKALLQENSPLIGDFPAFLEAMSEVFEYRQALRVAEEAMFTIRQGGRS
Sbjct: 241  VINHLSGLALEWAKALLQENSPLIGDFPAFLEAMSEVFEYRQALRVAEEAMFTIRQGGRS 300

Query: 301  ATEYIDEFQSLVPILGWPDEVLQAHLCQGLNEEIRHYLFRVPQPDSLDSLIVLILQIEEK 360
            ATEYIDEFQSLVPILGWPDEVLQAHLCQGLNEEIRHYLFRVPQPDSLDSLIVLILQIEEK
Sbjct: 301  ATEYIDEFQSLVPILGWPDEVLQAHLCQGLNEEIRHYLFRVPQPDSLDSLIVLILQIEEK 360

Query: 361  LAERRAMLRLPPEARPRNLTWIDSPAPERWMVSSWLPSEVHPDINRAHLFLLLMVRVNPY 420
            LAERRAMLRLPPEARPRNLTWIDSPAPERWMVSSWLPSEVHPDINRAHLFLLLMVRVNPY
Sbjct: 361  LAERRAMLRLPPEARPRNLTWIDSPAPERWMVSSWLPSEVHPDINRAHLFLLLMVRVNPY 420

Query: 421  HSVAVQALVDSGADGNFMDEKFAQEHYVELYEKPYPQPVQSVDGSLIGNEPVWLYTEPLV 480
            HSVAVQALVDSGADGNFMDEKFAQEHYVELYEKPYPQPVQSVDGSLIGNEPVWLYTEPLV
Sbjct: 421  HSVAVQALVDSGADGNFMDEKFAQEHYVELYEKPYPQPVQSVDGSLIGNEPVWLYTEPLV 480

Query: 481  CIHQNHQESIEFDIVPSPNFSVVLGIRWLRVHAPEVDWIKGRCTFHSPYCLKNCFRPPPP 540
            CIHQNHQESIEFDIVPSPNFSVVLGIRWLRVHAPEVDWIKGRCTFHSPYCLKNCFRPPPP
Sbjct: 481  CIHQNHQESIEFDIVPSPNFSVVLGIRWLRVHAPEVDWIKGRCTFHSPYCLKNCFRPPPP 540

Query: 541  CIALERHGMSLLPGLPHPYSDLADVFNPKEADDETSDQPSSDGSDDLSESEPSELQQAGD 600
            CIALERHGMSLLPGLPHPYSDLADVFNPKEADDETSDQPSSDGSDDLSESEPSELQQAGD
Sbjct: 541  CIALERHGMSLLPGLPHPYSDLADVFNPKEADDETSDQPSSDGSDDLSESEPSELQQAGD 600

Query: 601  SDHSETFYECPSTAPWEPVGARMQERARLQEEYWDLQDMLTNRQDYIQMIPELFDQLHGA 660
            SDHSETFYECPSTAPWEPVGARMQERARLQEEYWDLQDMLTNRQDYIQMIPELFDQLHGA
Sbjct: 601  SDHSETFYECPSTAPWEPVGARMQERARLQEEYWDLQDMLTNRQDYIQMIPELFDQLHGA 660

Query: 661  EWFTKLELRGTIVEESVNGHRTEDVWKAAFGLELEEMKSYQPFALSPDPIIPQNVIHFIL 720
            EWFTKLELRGTIVEESVNGHRTEDVWKAAFGLELEEMKSYQPFALSPDPIIPQNVIHFIL
Sbjct: 661  EWFTKLELRGTIVEESVNGHRTEDVWKAAFGLELEEMKSYQPFALSPDPIIPQNVIHFIL 720

Query: 721  KDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGF 780
            KDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGF
Sbjct: 721  KDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGF 780

Query: 781  VVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSS 840
            VVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSS
Sbjct: 781  VVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSS 840

Query: 841  YQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKR 900
            YQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKR
Sbjct: 841  YQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKR 900

Query: 901  ACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYLENTEEPIMILLNTEDLASLNND 960
            ACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYLENTEEPIMILLNTEDLASLNND
Sbjct: 901  ACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYLENTEEPIMILLNTEDLASLNND 960

Query: 961  RLTVLLPGHWVFFFSHFNFDVMELPEQDGGRALPPVRNLRWRRAFQRNTAARQTLLLASR 1020
            RLTVLLPGHWVFFFSHFNFDVMELPEQDGGRALPPVRNLRWRRAFQRNTAARQTLLLASR
Sbjct: 961  RLTVLLPGHWVFFFSHFNFDVMELPEQDGGRALPPVRNLRWRRAFQRNTAARQTLLLASR 1020

Query: 1021 GFPRDPSTESGEEENEEQDELNEQILRQELLAMIPIDQILNSFLAHFSMAQIRAVILHFF 1080
            GFPRDPSTESGEEENEEQDELNEQILRQELLAMIPIDQILNSFLAHFSMAQIRAVILHFF
Sbjct: 1021 GFPRDPSTESGEEENEEQDELNEQILRQELLAMIPIDQILNSFLAHFSMAQIRAVILHFF 1080

Query: 1081 RGLLYWKNTLALAAILVLLRVRQCLSLRPAPAMRVARPQPQRSLRLILDSSLIAGSSITT 1140
            RGLLYWKNTLALAAILVLLRVRQCLSLRPAPAMRVARPQPQRSLRLILDSSLIAGSSITT
Sbjct: 1081 RGLLYWKNTLALAAILVLLRVRQCLSLRPAPAMRVARPQPQRSLRLILDSSLIAGSSITT 1140

Query: 1141 AITQLLTQMPALVGANTIPAQELAELFLGPGRWQRNALHSQAHRGLQFTPGFWLTLCEFF 1200
            AITQLLTQMPALVGANTIPAQELAELFLGPGRWQRNALHSQAHRGLQFTPGFWLTLCEFF
Sbjct: 1141 AITQLLTQMPALVGANTIPAQELAELFLGPGRWQRNALHSQAHRGLQFTPGFWLTLCEFF 1200

Query: 1201 GVRVTPQEGHLPALRQNRYLELHVVGDEDVVLREALQDDLQRYRQCGLHDGLQDTSQDKQ 1260
            GVRVTPQEGHLPALRQNRYLELHVVGDEDVVLREALQDDLQRYRQCGLHDGLQDTSQDKQ
Sbjct: 1201 GVRVTPQEGHLPALRQNRYLELHVVGDEDVVLREALQDDLQRYRQCGLHDGLQDTSQDKQ 1260

Query: 1261 DNDVQEAPPSHTAATHPPRPRHLMDPQVLEFLGSRLLHIHSADGQLHLLSREQAARALSQ 1320
            DNDVQEAPPSHTAATHPPRPRHLMDPQVLEFLGSRLLHIHSADGQLHLLSREQAARALSQ
Sbjct: 1261 DNDVQEAPPSHTAATHPPRPRHLMDPQVLEFLGSRLLHIHSADGQLHLLSREQAARALSQ 1320

Query: 1321 FLTLIYRRALPIPAWESQPREQARLEELPDEDEDANLD 1358
            FLTLIYRRALPIPAWESQPREQARLEELPDEDEDANLD
Sbjct: 1321 FLTLIYRRALPIPAWESQPREQARLEELPDEDEDANLD 1358


>gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]
          Length = 708

 Score =  167 bits (423), Expect = 6e-41
 Identities = 130/486 (26%), Positives = 215/486 (44%), Gaps = 84/486 (17%)

Query: 146 REETPQEQNQTEHSTAELMAMVRSIISLYFRMQDLKEQQRVAEEILIKGINAGQLPAP-- 203
           RE+  ++  +  +  +++  +     +L  +++   E +   ++I ++G  A   P P  
Sbjct: 17  REKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDED--DDIELRGAAAAAAPPPPI 74

Query: 204 ---------KHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAK 254
                    + F G+      F+  CQ+ ++   R F  DR+RV +V + ++G A  WA 
Sbjct: 75  EEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWAS 134

Query: 255 ALLQENSPLIGDFPAFLEAMSEVFEYRQALRVAEEAMFTIRQGGRSATEYIDEFQSLVPI 314
           A L+ +  L+ ++PAF+  M  VFE  Q   VA+  +  +RQG  S  +Y + FQ +   
Sbjct: 135 AKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQD 194

Query: 315 LGWPDEVLQAHLCQGLNEEIRHYLFRVPQPDSLDSLIVLILQIEEKLAERR--------- 365
           L W +  L     +GL++ I+  L  +    SL +LI   + IE +LA            
Sbjct: 195 LDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERRLARAAAARKPRSPP 254

Query: 366 ----------------------AMLRLPPEARPR----NLTWI----------------- 382
                                 A +RL  E + R    NL                    
Sbjct: 255 RALVLPHIASHHQVDPTEPVGGARMRLTQEEKERRRKLNLCLYCGTGGHYADNCPAKASK 314

Query: 383 DSPAPERWMVSSWLPSEVHPDINRA--------HLFLLLMVRVNPYHSVAVQALVDSGAD 434
            SPA +    +   PS   P+I R+        HL ++L + +   H++ V+A++DSGA 
Sbjct: 315 SSPAGKLPGPAVEGPSATGPEIIRSPQDDASSPHLQVMLQIHLPGRHTLFVRAMIDSGAS 374

Query: 435 GNFMDEKFAQEHYVELYEKPYPQPVQSVDGSLIGNEPVWLYTEPLVCIHQNHQESIEFDI 494
           GNF+D ++  ++ + L  K +P  V+++DG  I + PV   T  L+    +H+E + FD+
Sbjct: 375 GNFIDHEYVAQNGIPLRIKDWPILVEAIDGRPIASGPVVHETHDLIVDLGDHREVLSFDV 434

Query: 495 VPSPNFSVVLGIRWLRVHAPEVDWIKGRCTFHSPYCLKNC--FRPPPPCIALERHGMSLL 552
             SP F VVLG+RWL  H P + W      F S YC  +C  + P PP         SL 
Sbjct: 435 TQSPFFPVVLGVRWLSTHDPNITWSTRSIVFDSEYCRYHCRMYSPIPP---------SLP 485

Query: 553 PGLPHP 558
           P  P P
Sbjct: 486 PPAPQP 491


>gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]
          Length = 325

 Score = 94.4 bits (233), Expect = 7e-19
 Identities = 66/245 (26%), Positives = 117/245 (47%), Gaps = 15/245 (6%)

Query: 146 REETPQEQNQTEHSTAELMAMVRSIISLYFRMQDLKEQQRVAEEILIKGINAGQLPAP-- 203
           RE+  ++  +  +  +++  +     +L  +++   E +   ++I ++G  A   P P  
Sbjct: 17  REKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDED--DDIELRGAAAAAAPPPPI 74

Query: 204 ---------KHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAK 254
                    + F G+      F+  CQ+ ++   R F  DR+RV +V + ++G A  WA 
Sbjct: 75  EEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWAS 134

Query: 255 ALLQENSPLIGDFPAFLEAMSEVFEYRQALRVAEEAMFTIRQGGRSATEYIDEFQSLVPI 314
           A L+ +  L+ ++PAF+  M  VFE  Q   VA+  +  +RQG  S  +Y + FQ +   
Sbjct: 135 AKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQD 194

Query: 315 LGWPDEVLQAHLCQGLNEEIRHYLFRVPQPDSLDSLIVLILQIEEKLAERRAMLRLPPEA 374
           L W +  L     +GL++ I+  L  +    SL +LI   + IE +LA  RA     P +
Sbjct: 195 LDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERRLA--RAAAARKPRS 252

Query: 375 RPRNL 379
            PR L
Sbjct: 253 PPRAL 257


>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
          Length = 569

 Score = 84.7 bits (208), Expect = 5e-16
 Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 4/187 (2%)

Query: 201 PAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQEN 260
           P  + FSGD     EF++  +  +  +   F     RV ++I+  +G A +WA ++ QE 
Sbjct: 151 PEIEPFSGDPVYLAEFLMQLETFIADHEVHFPGGAERVAFLISFFTGEAKDWAISVTQEG 210

Query: 261 SPLIGDFPAFLEAMSEVFEYRQALRVAEEAMFTIRQGGRSATEYIDEFQSLVPILGWPDE 320
           SPL  +FP FL+ + + F      RVA++A+  ++QG  +   Y D FQ L   L W D 
Sbjct: 211 SPLHANFPRFLDEIRKEFCGPIPPRVAKKAIRKLKQGHCTLGSYADAFQFLAQFLSWDDC 270

Query: 321 VLQAHLCQGLNEEIRHYLFRVPQPDSLDSLIVLILQIEEKLAERRAMLRLPPEARPRNLT 380
            LQ    +GL+E  R  L    +   LD LI+  ++IE K+   + +    P    RN+ 
Sbjct: 271 RLQNQFLKGLSEFFRKELLWSTEMADLDELILECVEIERKVRVPKPI----PLPGVRNII 326

Query: 381 WIDSPAP 387
           +  +P+P
Sbjct: 327 FPFAPSP 333


>gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]
          Length = 475

 Score = 62.4 bits (150), Expect = 3e-09
 Identities = 78/336 (23%), Positives = 132/336 (39%), Gaps = 33/336 (9%)

Query: 47  PASGPAQEKKE--PPSGPLQEMEELPTD--LLQDMEEPSSGPR-------KEIEDPPNDL 95
           PA+  AQ+  E   P  P +  + LP +     +++E  + P        +E + PP  +
Sbjct: 71  PAAWEAQKTPEFKEPQKPPEPQDLLPWEPPAAWELQEAPAAPESLAPPATRESQKPP--M 128

Query: 96  LQDLEESCNGSHQARGDPLSGASDRMKEASVNPSGAREEQEAHTDLKESGRE----ETPQ 151
             ++     G   A     + A +       +P    + QEA  + +E+  +    E P 
Sbjct: 129 AHEIPTVLEGQGPANTQDATIAQEPKNSEPQDPPNIEKPQEA-PEYQETAAQLEFLELPP 187

Query: 152 EQNQTEHSTA----ELMAMVRSIISLYFRMQDLKEQQRVAEEILIKGINAGQLPAPKH-- 205
            Q   E S A    EL A   S+  L         +   A      G+ A   P      
Sbjct: 188 PQEPLEPSNAQEFLELSAAQESLEGLIVVETSAASEFPQAPI----GLEATDFPLQYTLT 243

Query: 206 FSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQENSPLIG 265
           FSGD ++  EF+V     ++    ++  +   V +V N  SG A  W + LL   SPL+ 
Sbjct: 244 FSGDSQKLPEFLVQLYSYMRVRGHLYPTEAALVSFVGNCFSGRAGWWFQLLLDIQSPLLE 303

Query: 266 DFPAFLEAMSEVFEYRQALRVAEEAMFTIRQG-GRSATEYIDEFQSLVPILGWPDEVLQA 324
              +F+  + + F+  + ++ A + +  + QG G  AT     F  +   L W +  L  
Sbjct: 304 QCESFIPVLQDTFDNPENMKDANQCIHQLCQGEGHVAT----HFHLIAQELNWDESTLWI 359

Query: 325 HLCQGLNEEIRHYLFRVPQPDSLDSLIVLILQIEEK 360
              +GL   I+  L       +L  LI   + +EEK
Sbjct: 360 QFQEGLASSIQDELSHTSPATNLSDLITQCISLEEK 395


>gi|118200333 family with sequence similarity 127, member B isoform
           1 [Homo sapiens]
          Length = 113

 Score = 57.8 bits (138), Expect = 7e-08
 Identities = 29/83 (34%), Positives = 44/83 (53%)

Query: 200 LPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQE 259
           +P P+ F GD     EFIV     +      F ND L+V ++I  L+G AL+W    +++
Sbjct: 27  IPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIRK 86

Query: 260 NSPLIGDFPAFLEAMSEVFEYRQ 282
            SPL+ D+  FL  M  VF + +
Sbjct: 87  ESPLLNDYRGFLAEMKRVFGWEE 109


>gi|118200337 family with sequence similarity 127, member C [Homo
           sapiens]
          Length = 113

 Score = 57.8 bits (138), Expect = 7e-08
 Identities = 29/83 (34%), Positives = 44/83 (53%)

Query: 200 LPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQE 259
           +P P+ F GD     EFIV     +      F ND L+V ++I  L+G AL+W    +++
Sbjct: 27  IPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIKK 86

Query: 260 NSPLIGDFPAFLEAMSEVFEYRQ 282
            SPL+ D+  FL  M  VF + +
Sbjct: 87  ESPLLSDYRGFLAEMKRVFGWEE 109


>gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo
           sapiens]
          Length = 146

 Score = 57.0 bits (136), Expect = 1e-07
 Identities = 27/79 (34%), Positives = 46/79 (58%)

Query: 200 LPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQE 259
           +P P+ F+G+     EFIV     +      F ND ++V ++I+ L+G A EW    ++ 
Sbjct: 51  VPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEM 110

Query: 260 NSPLIGDFPAFLEAMSEVF 278
           +SP++GD+ AFL+ M + F
Sbjct: 111 DSPILGDYRAFLDEMKQCF 129


>gi|239757911 PREDICTED: similar to Family with sequence similarity
           127, member B [Homo sapiens]
          Length = 113

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 29/83 (34%), Positives = 44/83 (53%)

Query: 200 LPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQE 259
           +P P+ F GD     EFIV     +      F ND L+V ++I  L+G AL+W    +++
Sbjct: 27  IPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIRK 86

Query: 260 NSPLIGDFPAFLEAMSEVFEYRQ 282
            SPL+ D+  FL  M  VF + +
Sbjct: 87  ESPLLNDYRGFLAEMKRVFGWEE 109


>gi|118200335 family with sequence similarity 127, member A [Homo
           sapiens]
          Length = 113

 Score = 55.1 bits (131), Expect = 5e-07
 Identities = 28/83 (33%), Positives = 44/83 (53%)

Query: 200 LPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQE 259
           +P P+ F GD     EFIV     +      F +D L+V ++I  L+G AL+W    +++
Sbjct: 27  IPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIKK 86

Query: 260 NSPLIGDFPAFLEAMSEVFEYRQ 282
            SPL+ D+  FL  M  VF + +
Sbjct: 87  ESPLLNDYRGFLAEMKRVFGWEE 109


>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
          Length = 1898

 Score = 51.2 bits (121), Expect = 7e-06
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 2/124 (1%)

Query: 791  KNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQ 850
            + V+  +     P +  +L  F+ F+  +R  +  +  +  PL   L     + W  E +
Sbjct: 1076 QQVLAHLAQLTIPSNFTALSFFMGFMDSHRDAIPDYEALVGPLHSLLKQKPDWQWDQEHE 1135

Query: 851  EAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNI 910
            EAF  LKRA   A  L  P  Q PF LE  V+  AL A L Q  + +G++   A+ S+ +
Sbjct: 1136 EAFLALKRALVSALCLMAPNSQLPFRLEVTVSHVALTAILHQ--EHSGRKHPIAYTSKPL 1193

Query: 911  SPIE 914
             P E
Sbjct: 1194 LPDE 1197


>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
          Length = 1388

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 2/137 (1%)

Query: 231  FYNDRLRVGYVINHLSGLALEWAKALLQENSPLIGDFPAFLEAMSEVFEYRQALRVAEEA 290
            F +D  R+ ++++   G A  W    ++   PL  +  +FL     +++    + +    
Sbjct: 1179 FLDDSERMAFLVSLHLGAAERWFILQMEVGEPLSHENKSFLRRSQGIYDSLSEIDILSAV 1238

Query: 291  MFTIRQGGRSATEYIDEFQSLVPILGWPDEVLQAHLCQGLNEEIRHYLFRV--PQPDSLD 348
            +   +QG +S  +Y  +F  L   L W D +L+    +GL+E +   + R+      SL 
Sbjct: 1239 LCHPKQGQKSVRQYATDFLLLARHLSWSDAILRTRFLEGLSEAVTTKMGRIFLKVAGSLK 1298

Query: 349  SLIVLILQIEEKLAERR 365
             LI   L  E +LAE +
Sbjct: 1299 ELIDRSLYTECQLAEEK 1315


>gi|169217000 PREDICTED: similar to pro-pol protein [Homo sapiens]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 12/175 (6%)

Query: 722 DMLGFF-----VLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVE 776
           D+L F      ++ Y   +L+ S S E    H   VL          S  K+Q    ++ 
Sbjct: 78  DLLSFHPSASHLIQYIDGLLLCSPSFESSQQHTLLVLQHLFFKGYRVSPSKAQISSPSIT 137

Query: 777 FLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQ 836
            LG +       L  N + +I+  PTP +K  L  F+  V  +  ++  F+I+ +PL + 
Sbjct: 138 HLGIIRHENTSALPANRVRLISQTPTPSTKQQLLFFLGMVGYFHLWIPGFAILTKPLYK- 196

Query: 837 LLSSYQFYWGVEEQ----EAFECLKRAFRKAPLLHHPKPQNPFYLETG-VTGTAL 886
            L        ++ +     +F  LK A   A  L  P    PF L T  V G A+
Sbjct: 197 -LKKGNLADPIDPKSFPHSSFHSLKTALDTASTLALPDSSQPFSLHTAEVQGCAV 250


>gi|169216817 PREDICTED: similar to pro-pol protein [Homo sapiens]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 12/175 (6%)

Query: 722 DMLGFF-----VLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVE 776
           D+L F      ++ Y   +L+ S S E    H   VL          S  K+Q    ++ 
Sbjct: 78  DLLSFHPSASHLIQYIDGLLLCSPSFESSQQHTLLVLQHLFFKGYRVSPSKAQISSPSIT 137

Query: 777 FLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQ 836
            LG +       L  N + +I+  PTP +K  L  F+  V  +  ++  F+I+ +PL + 
Sbjct: 138 HLGIIRHENTSALPANRVRLISQTPTPSTKQQLLFFLGMVGYFHLWIPGFAILTKPLYK- 196

Query: 837 LLSSYQFYWGVEEQ----EAFECLKRAFRKAPLLHHPKPQNPFYLETG-VTGTAL 886
            L        ++ +     +F  LK A   A  L  P    PF L T  V G A+
Sbjct: 197 -LKKGNLADPIDPKSFPHSSFHSLKTALDTASTLALPDSSQPFSLHTAEVQGCAV 250


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 5    SEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPAS--GPAQEKKEPPSGP 62
            S  S  +     + SS    SS  SS+++ ++S S    + GP +   PA  KK PP   
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGER 2673

Query: 63   LQEMEELPTDLLQDMEEPSSGP--RKEIEDPPNDLLQDLEESCNGSHQA-RGDPLSGASD 119
                   P D L+D    S  P  R+     P+   Q    S  GS +  RGD  S +  
Sbjct: 2674 RSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHK 2733

Query: 120  RMKE 123
            R +E
Sbjct: 2734 RRRE 2737



 Score = 35.4 bits (80), Expect = 0.37
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 9/136 (6%)

Query: 20   SKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSGPLQEMEELPTDLLQDMEE 79
            +K+  SS  SS+++ ++S S     +  +SG +    E  S P+Q     P   L+ +  
Sbjct: 2527 AKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQ-----PEVALKRVPS 2581

Query: 80   PSSGPRKEIED----PPNDLLQDLEESCNGSHQARGDPLSGASDRMKEASVNPSGAREEQ 135
            P+  P++ + +     P    +    S + S  +     S +S     +S + S +    
Sbjct: 2582 PTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2641

Query: 136  EAHTDLKESGREETPQ 151
             + +    S  +  PQ
Sbjct: 2642 SSSSSSSPSPAKPGPQ 2657



 Score = 31.6 bits (70), Expect = 5.4
 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 537 PPPPCIALERHGMSLLPGLPHPYSDLADVFNPKEADDETSDQPSSDGSDDL-----SESE 591
           P P  +  ERHG S  P    P S   +  NP      T D+      + L     SES 
Sbjct: 364 PAPTPLLAERHGGSPQPLATTPLSQ--EPVNPPSEASPTRDRSPPKSPEKLPQSSSSESS 421

Query: 592 PSELQQAGDSDHSETFYECPSTAP 615
           P   Q    S H+ +  E P  AP
Sbjct: 422 PPSPQPTKVSRHASSSPESPKPAP 445


>gi|4502805 chromogranin A precursor [Homo sapiens]
          Length = 457

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 29/165 (17%)

Query: 1   MIEPSEDSFETMMEHKNPSSKQM----ESSEGSSNTTEATSGSGVRGEAGPASGPAQEKK 56
           ++E      E     + PSSK +    E S+ +  + EAT G+  R +A P   P QE K
Sbjct: 107 VLENQSSQAELKEAVEEPSSKDVMEKREDSKEAEKSGEATDGA--RPQALPE--PMQESK 162

Query: 57  EPPSGPLQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDP--- 113
              +      EE   +   +   P+S P ++   P                QA GD    
Sbjct: 163 AEGNNQAPGEEEEEEEEATNTHPPASLPSQKYPGP----------------QAEGDSEGL 206

Query: 114 LSGASDRMKEASVNPS--GAREEQEAHTDLKESGREETPQEQNQT 156
             G  DR K  S  P     REE+E   +  E+G E  P+E+  T
Sbjct: 207 SQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAGEEAVPEEEGPT 251


>gi|82830424 gon-4-like isoform a [Homo sapiens]
          Length = 2240

 Score = 40.4 bits (93), Expect = 0.012
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 16   KNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSGPLQEM----EELPT 71
            K PSS Q    EG+S T +   GS     A  +  P      PP  P        + + T
Sbjct: 1388 KTPSSSQEPPDEGTSGT-DVNKGSSKN--ALSSMDPEVRLSSPPGKPEDSSSVDGQSVGT 1444

Query: 72   DLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLSGASDRMKEASVNPSGA 131
             +  +     +GP +E E+  +DL QD E+  + + +     +    + M++ +   S  
Sbjct: 1445 PVGPETGGEKNGPEEEEEEDFDDLTQDEEDEMSSASEESVLSVPELQETMEKLTWLASER 1504

Query: 132  REEQEAHTDLKESGREETPQEQNQTEHS 159
            R  QE  ++ + S  E +  E+ + E +
Sbjct: 1505 RMSQEGESEEENSQEENSEPEEEEEEEA 1532


>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score = 39.7 bits (91), Expect = 0.020
 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 6/161 (3%)

Query: 4   PSEDSFETMMEHKNPSSKQMES--SEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSG 61
           P+E++     E K+P  ++ +S     S    EA S + V+      S   +E K PP  
Sbjct: 505 PAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEA 564

Query: 62  PLQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLSGASDRM 121
              E EE  +       E +  P KE    P +     +       +A+    + A   +
Sbjct: 565 KSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSP--AEAKSPV 622

Query: 122 KEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHSTAE 162
           KE + +P+  +  ++A +  KE  +  +P++    E   A+
Sbjct: 623 KEEAKSPAEVKSPEKAKSPTKEEAK--SPEKAKSPEKEEAK 661



 Score = 38.9 bits (89), Expect = 0.034
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 19/173 (10%)

Query: 10  ETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSGPLQEMEEL 69
           E + E +   +K+ E  E      E   G     ++ PA   A  +KE  S P++E  + 
Sbjct: 468 EEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKS-PVKEEAKS 526

Query: 70  PTDLLQDMEEPSSGP-------------RKEIEDPPNDLLQDLEESCNGSHQARGDPLSG 116
           P +     +E +  P             ++E + PP     + EE+      A       
Sbjct: 527 PAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKEEA---KSPAEVKSPEK 583

Query: 117 ASDRMKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHSTAELMAMVRS 169
           A    KE + +P+ A+  ++A + +KE  +  +P E        A+  A V+S
Sbjct: 584 AKSPAKEEAKSPAEAKSPEKAKSPVKEEAK--SPAEAKSPVKEEAKSPAEVKS 634



 Score = 33.9 bits (76), Expect = 1.1
 Identities = 43/220 (19%), Positives = 83/220 (37%), Gaps = 11/220 (5%)

Query: 4   PSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSG----SGVRGEA---GPASGPAQEK- 55
           P ++  ++  E K+P   +  + E + +  EA S     S V+ EA     A  P +E+ 
Sbjct: 567 PEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEA 626

Query: 56  KEPPSGPLQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLS 115
           K P      E  + PT       E +  P KE    P      ++       +A+    +
Sbjct: 627 KSPAEVKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKA 686

Query: 116 GASDRMKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHSTAELMAMVRSIISLYF 175
            A    K  S     A+  ++A + +KE  +  +P++        A+     +S +    
Sbjct: 687 EAKSPEKAKSPVKEEAKSPEKAKSPVKEEAK--SPEKAKSPVKEEAKTPEKAKSPVKEEA 744

Query: 176 RMQDLKEQQRVAEEILIKGINAGQLPAPKHFSGDRREFHE 215
           +  +  +    A+ + +K   A + PA +       +F E
Sbjct: 745 KSPEKAKSPEKAKTLDVKSPEA-KTPAKEEARSPADKFPE 783



 Score = 33.5 bits (75), Expect = 1.4
 Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 10/167 (5%)

Query: 4   PSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKK-EPPSGP 62
           P ++  ++  E K+P   +  + E + +  EA S      E   A  PA+ K  E    P
Sbjct: 533 PEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSP-----EKEEAKSPAEVKSPEKAKSP 587

Query: 63  LQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLSGASDRMK 122
            +E  + P +      E +  P KE    P +    ++E      + +      A    K
Sbjct: 588 AKEEAKSPAEAKSP--EKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSP--EKAKSPTK 643

Query: 123 EASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHSTAELMAMVRS 169
           E + +P  A+  ++      E  +     E    E + + + A  +S
Sbjct: 644 EEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKS 690



 Score = 32.3 bits (72), Expect = 3.2
 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 12/175 (6%)

Query: 1   MIEPSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPS 60
           ++E SE   ET++  +     Q+          EA    G   E G        ++E  S
Sbjct: 446 VVEKSEK--ETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKS 503

Query: 61  GPLQEM----EELPTDLLQDMEEP--SSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPL 114
            P +E     +E  + + ++ + P  +  P KE    P ++    +       +A+  P 
Sbjct: 504 PPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPP- 562

Query: 115 SGASDRMKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHSTAELMAMVRS 169
             A    KE + +P+  +  ++A +  KE  +  +P E    E + + +    +S
Sbjct: 563 -EAKSPEKEEAKSPAEVKSPEKAKSPAKEEAK--SPAEAKSPEKAKSPVKEEAKS 614



 Score = 30.8 bits (68), Expect = 9.2
 Identities = 31/163 (19%), Positives = 66/163 (40%), Gaps = 11/163 (6%)

Query: 4   PSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGP-----ASGPAQEKKEP 58
           P ++  +T  + K+P  ++ +S E + +  +A +      EA       A  PA +  E 
Sbjct: 725 PVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEK 784

Query: 59  PSGPLQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLSGAS 118
              P++E  + P      ++E +  P KEI           EE      + +  P     
Sbjct: 785 AKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPP----- 839

Query: 119 DRMKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHSTA 161
            +  E    P+  + E++  +  +E+ ++E P+ + + +   A
Sbjct: 840 -KKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPA 881


>gi|49355807 leucine zipper, down-regulated in cancer 1-like [Homo
           sapiens]
          Length = 239

 Score = 39.7 bits (91), Expect = 0.020
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 203 PKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQENSP 262
           P+ FSGD      F++     +      F  +  RV ++++ L+G A +WA   +Q +SP
Sbjct: 102 PEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSP 161

Query: 263 LIGDFPAFLEAMSEVFEYRQALRVAEEA 290
           L  ++  FL  +     Y+  LR A  A
Sbjct: 162 LRNNYQGFLAELRRT--YKSPLRHARRA 187


>gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo
           sapiens]
          Length = 788

 Score = 39.3 bits (90), Expect = 0.026
 Identities = 71/337 (21%), Positives = 128/337 (37%), Gaps = 51/337 (15%)

Query: 2   IEPSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSG 61
           + P+E+S E   E    S+ +  S        EA     V  + G  +GP+    + P  
Sbjct: 338 VPPAEESPEVTTEAAEASAVEAGSEVSEKPGQEAP----VLPKDGAVNGPSVVGDQTPIE 393

Query: 62  PLQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLS-----G 116
           P   +E L     +D        R ++     +    +EES     +A GD +      G
Sbjct: 394 PQTSIERLTET--KDGSGLEEKVRAKLVPSQEETKLSVEES-----EAAGDGVDTKVAQG 446

Query: 117 ASDRMKEASVNPSGAREEQEAHTDLKE----SGREETPQEQNQTEH-------------- 158
           A+++  E  V  +   E QE    +KE     G EE  +E ++TE               
Sbjct: 447 ATEKSPEDKVQIAANEETQEREEQMKEGEETEGSEEDDKENDKTEEMPNDSVLENKSLQE 506

Query: 159 ------STAELMAMVRSIISLYFRMQDLKEQQRVAEEILIKGINAGQLPA-PKHFSGDRR 211
                    EL   +  +  + F+ Q+ KE Q  A +  +K    G++    +++     
Sbjct: 507 NEEEEIGNLELAWDMLDLAKIIFKRQETKEAQLYAAQAHLK---LGEVSVESENYVQAVE 563

Query: 212 EFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQENSPLIGDFPAFL 271
           EF   + L +  L+++ R+      ++G    + S    + A A   ++  +I +  A L
Sbjct: 564 EFQSCLNLQEQYLEAHDRLLAETHYQLGLAYGYNS--QYDEAVAQFSKSIEVIENRMAVL 621

Query: 272 -----EAMSEVFEYRQALRVAEEAMFTIRQGGRSATE 303
                EA     EY++ +   +E +  IR+    A E
Sbjct: 622 NEQVKEAEGSSAEYKKEIEELKELLPEIREKIEDAKE 658



 Score = 31.2 bits (69), Expect = 7.1
 Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 19/154 (12%)

Query: 13  MEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSGPLQEMEELPTD 72
           +E +     + ES   +++  +  +   +R +   A G  +E K+     L + E   TD
Sbjct: 115 VEEEEGEKTEDESLVENNDNIDEEAREELREQVYDAMGEKEEAKKTEDKSLAKPE---TD 171

Query: 73  LLQDMEEPSSGPR-----KEIEDPPNDLLQDLEESCNGSHQARGDPLSGASDRMKEASVN 127
             QD E    G       K  E+P   +   L+     S +A+G     A +   EA V 
Sbjct: 172 KEQDSEMEKGGREDMDISKSAEEPQEKVDLTLDWLTETSEEAKG---GAAPEGPNEAEVT 228

Query: 128 --------PSGAREEQEAHTDLKESGREETPQEQ 153
                   P    E+  + TD++E  RE+  QE+
Sbjct: 229 SGKPEQEVPDAEEEKSVSGTDVQEECREKGGQEK 262


>gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo
           sapiens]
          Length = 790

 Score = 39.3 bits (90), Expect = 0.026
 Identities = 71/337 (21%), Positives = 128/337 (37%), Gaps = 51/337 (15%)

Query: 2   IEPSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSG 61
           + P+E+S E   E    S+ +  S        EA     V  + G  +GP+    + P  
Sbjct: 340 VPPAEESPEVTTEAAEASAVEAGSEVSEKPGQEAP----VLPKDGAVNGPSVVGDQTPIE 395

Query: 62  PLQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLS-----G 116
           P   +E L     +D        R ++     +    +EES     +A GD +      G
Sbjct: 396 PQTSIERLTET--KDGSGLEEKVRAKLVPSQEETKLSVEES-----EAAGDGVDTKVAQG 448

Query: 117 ASDRMKEASVNPSGAREEQEAHTDLKE----SGREETPQEQNQTEH-------------- 158
           A+++  E  V  +   E QE    +KE     G EE  +E ++TE               
Sbjct: 449 ATEKSPEDKVQIAANEETQEREEQMKEGEETEGSEEDDKENDKTEEMPNDSVLENKSLQE 508

Query: 159 ------STAELMAMVRSIISLYFRMQDLKEQQRVAEEILIKGINAGQLPA-PKHFSGDRR 211
                    EL   +  +  + F+ Q+ KE Q  A +  +K    G++    +++     
Sbjct: 509 NEEEEIGNLELAWDMLDLAKIIFKRQETKEAQLYAAQAHLK---LGEVSVESENYVQAVE 565

Query: 212 EFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQENSPLIGDFPAFL 271
           EF   + L +  L+++ R+      ++G    + S    + A A   ++  +I +  A L
Sbjct: 566 EFQSCLNLQEQYLEAHDRLLAETHYQLGLAYGYNS--QYDEAVAQFSKSIEVIENRMAVL 623

Query: 272 -----EAMSEVFEYRQALRVAEEAMFTIRQGGRSATE 303
                EA     EY++ +   +E +  IR+    A E
Sbjct: 624 NEQVKEAEGSSAEYKKEIEELKELLPEIREKIEDAKE 660



 Score = 31.2 bits (69), Expect = 7.1
 Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 19/154 (12%)

Query: 13  MEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSGPLQEMEELPTD 72
           +E +     + ES   +++  +  +   +R +   A G  +E K+     L + E   TD
Sbjct: 117 VEEEEGEKTEDESLVENNDNIDEEAREELREQVYDAMGEKEEAKKTEDKSLAKPE---TD 173

Query: 73  LLQDMEEPSSGPR-----KEIEDPPNDLLQDLEESCNGSHQARGDPLSGASDRMKEASVN 127
             QD E    G       K  E+P   +   L+     S +A+G     A +   EA V 
Sbjct: 174 KEQDSEMEKGGREDMDISKSAEEPQEKVDLTLDWLTETSEEAKG---GAAPEGPNEAEVT 230

Query: 128 --------PSGAREEQEAHTDLKESGREETPQEQ 153
                   P    E+  + TD++E  RE+  QE+
Sbjct: 231 SGKPEQEVPDAEEEKSVSGTDVQEECREKGGQEK 264


>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
          Length = 755

 Score = 38.5 bits (88), Expect = 0.044
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 10/162 (6%)

Query: 4   PSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSGPL 63
           P +++ E   E ++         EGS +  E+  G+ VRG +   S   + KK+      
Sbjct: 454 PEKEAEEGCPEKESEEGCPKRGFEGSCSQKESEEGNPVRG-SEEDSPKKESKKKTLKNDC 512

Query: 64  QE---MEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLSGASDR 120
           +E    +E   DL ++ EE   GP KE E+  +D  ++ +E C+      G       + 
Sbjct: 513 EENGLAKESEDDLNKESEE-EVGPTKESEE--DDSEKESDEDCSEKQSEDGSEREFEENG 569

Query: 121 MKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHSTAE 162
           + E  ++  G+  E+E H ++ +   EE   E ++ E   +E
Sbjct: 570 L-EKDLDEEGS--EKELHENVLDKELEENDSENSEFEDDGSE 608


>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
          Length = 755

 Score = 38.5 bits (88), Expect = 0.044
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 10/162 (6%)

Query: 4   PSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSGPL 63
           P +++ E   E ++         EGS +  E+  G+ VRG +   S   + KK+      
Sbjct: 454 PEKEAEEGCPEKESEEGCPKRGFEGSCSQKESEEGNPVRG-SEEDSPKKESKKKTLKNDC 512

Query: 64  QE---MEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLSGASDR 120
           +E    +E   DL ++ EE   GP KE E+  +D  ++ +E C+      G       + 
Sbjct: 513 EENGLAKESEDDLNKESEE-EVGPTKESEE--DDSEKESDEDCSEKQSEDGSEREFEENG 569

Query: 121 MKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHSTAE 162
           + E  ++  G+  E+E H ++ +   EE   E ++ E   +E
Sbjct: 570 L-EKDLDEEGS--EKELHENVLDKELEENDSENSEFEDDGSE 608


>gi|217330658 hypothetical protein LOC9812 [Homo sapiens]
          Length = 515

 Score = 38.5 bits (88), Expect = 0.044
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 16/146 (10%)

Query: 523 CTFHSPYCLKNCFRPP--PPCIALERHGMSLLPGLPHPYSDLADVFNPKEADDETSDQPS 580
           C++HSP  L   F  P   PC +L +H   +LP    P      +  P+   +E S QP 
Sbjct: 118 CSWHSP--LDRFFSSPLWHPCSSLRQH---ILPSPDGPAPRHTGLREPRLGQEEASAQPR 172

Query: 581 SDGSDDLSESEPSELQQAGDSD----HSETFYECPS-TAPWEPVGARMQERARLQEEYWD 635
           +   + L  + P +  + G  D    H+ +  E  +  A  +P G + Q++++       
Sbjct: 173 NFSHNSLRGARPQDPSEEGPGDFGFLHASSSIESEAKPAQPQPTGEKEQDKSKT----LS 228

Query: 636 LQDMLTNRQDYIQMIPELFDQLHGAE 661
           L++ +T+ Q   Q+   +     G E
Sbjct: 229 LEEAVTSIQQLFQLSVSIAFNFLGTE 254


>gi|217330656 hypothetical protein LOC9812 [Homo sapiens]
          Length = 515

 Score = 38.5 bits (88), Expect = 0.044
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 16/146 (10%)

Query: 523 CTFHSPYCLKNCFRPP--PPCIALERHGMSLLPGLPHPYSDLADVFNPKEADDETSDQPS 580
           C++HSP  L   F  P   PC +L +H   +LP    P      +  P+   +E S QP 
Sbjct: 118 CSWHSP--LDRFFSSPLWHPCSSLRQH---ILPSPDGPAPRHTGLREPRLGQEEASAQPR 172

Query: 581 SDGSDDLSESEPSELQQAGDSD----HSETFYECPS-TAPWEPVGARMQERARLQEEYWD 635
           +   + L  + P +  + G  D    H+ +  E  +  A  +P G + Q++++       
Sbjct: 173 NFSHNSLRGARPQDPSEEGPGDFGFLHASSSIESEAKPAQPQPTGEKEQDKSKT----LS 228

Query: 636 LQDMLTNRQDYIQMIPELFDQLHGAE 661
           L++ +T+ Q   Q+   +     G E
Sbjct: 229 LEEAVTSIQQLFQLSVSIAFNFLGTE 254


>gi|21237808 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin c2 isoform b [Homo sapiens]
          Length = 1130

 Score = 38.5 bits (88), Expect = 0.044
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 32/178 (17%)

Query: 5   SEDSFETMMEHKNPSSKQM---------ESSEGSSNTTEATSGSGVRGEAGPASGPAQEK 55
           +E+ +E + + KNP S++          E +   S+  +   G+  + +  P+  P  E 
Sbjct: 253 NEEDYE-VNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEA 311

Query: 56  KEP-----PSGPLQEM-----EELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNG 105
           K+      PS P  +      EE   DL +DM+EPS  P  E    P        ++ N 
Sbjct: 312 KKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLP--------KTVNT 363

Query: 106 SHQARGDPLSGAS----DRMKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHS 159
              +   P+ G +    D  ++ S+  +G  E++ +  +  E  +     E N TE +
Sbjct: 364 KKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQT 421


>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin c2 isoform a [Homo sapiens]
          Length = 1214

 Score = 38.5 bits (88), Expect = 0.044
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 32/178 (17%)

Query: 5   SEDSFETMMEHKNPSSKQM---------ESSEGSSNTTEATSGSGVRGEAGPASGPAQEK 55
           +E+ +E + + KNP S++          E +   S+  +   G+  + +  P+  P  E 
Sbjct: 253 NEEDYE-VNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEA 311

Query: 56  KEP-----PSGPLQEM-----EELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNG 105
           K+      PS P  +      EE   DL +DM+EPS  P  E    P        ++ N 
Sbjct: 312 KKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLP--------KTVNT 363

Query: 106 SHQARGDPLSGAS----DRMKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHS 159
              +   P+ G +    D  ++ S+  +G  E++ +  +  E  +     E N TE +
Sbjct: 364 KKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQT 421


>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin c2 isoform c [Homo sapiens]
          Length = 1152

 Score = 38.5 bits (88), Expect = 0.044
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 32/178 (17%)

Query: 5   SEDSFETMMEHKNPSSKQM---------ESSEGSSNTTEATSGSGVRGEAGPASGPAQEK 55
           +E+ +E + + KNP S++          E +   S+  +   G+  + +  P+  P  E 
Sbjct: 253 NEEDYE-VNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEA 311

Query: 56  KEP-----PSGPLQEM-----EELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNG 105
           K+      PS P  +      EE   DL +DM+EPS  P  E    P        ++ N 
Sbjct: 312 KKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLP--------KTVNT 363

Query: 106 SHQARGDPLSGAS----DRMKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHS 159
              +   P+ G +    D  ++ S+  +G  E++ +  +  E  +     E N TE +
Sbjct: 364 KKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQT 421


>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
            [Homo sapiens]
          Length = 1488

 Score = 38.1 bits (87), Expect = 0.058
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 29/187 (15%)

Query: 13   MEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSGPL--------- 63
            M   +P      S  G+S++ E++  S  + + GPA+  +  KK P S PL         
Sbjct: 1024 MPTAHPRIAPKASMAGASSSKESSRISDGKKQEGPATQVS--KKNPASLPLTQAALKVLA 1081

Query: 64   QEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLSG------- 116
            Q+  E    + +   +PSSG    +   P    Q       G+++ R   L         
Sbjct: 1082 QKASEAQPPVART--QPSSGVDSAVGTLPATSPQSTSVQAKGTNKLRKPKLPEVQQATKA 1139

Query: 117  --ASDRMKEASVNPSGAREE-------QEAHTDLKESGREETPQEQNQTEHSTAELMAMV 167
              +SD  +++S + SG+ E+       + AHT      R ET  E+   E S  +++A  
Sbjct: 1140 PESSDDSEDSSDSSSGSEEDGEGPQGAKSAHTLGPTPSRTETLVEETAAESSEDDVVAPS 1199

Query: 168  RSIISLY 174
            +S++S Y
Sbjct: 1200 QSLLSGY 1206


>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
            sapiens]
          Length = 1411

 Score = 38.1 bits (87), Expect = 0.058
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 29/187 (15%)

Query: 13   MEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSGPL--------- 63
            M   +P      S  G+S++ E++  S  + + GPA+  +  KK P S PL         
Sbjct: 947  MPTAHPRIAPKASMAGASSSKESSRISDGKKQEGPATQVS--KKNPASLPLTQAALKVLA 1004

Query: 64   QEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLSG------- 116
            Q+  E    + +   +PSSG    +   P    Q       G+++ R   L         
Sbjct: 1005 QKASEAQPPVART--QPSSGVDSAVGTLPATSPQSTSVQAKGTNKLRKPKLPEVQQATKA 1062

Query: 117  --ASDRMKEASVNPSGAREE-------QEAHTDLKESGREETPQEQNQTEHSTAELMAMV 167
              +SD  +++S + SG+ E+       + AHT      R ET  E+   E S  +++A  
Sbjct: 1063 PESSDDSEDSSDSSSGSEEDGEGPQGAKSAHTLGPTPSRTETLVEETAAESSEDDVVAPS 1122

Query: 168  RSIISLY 174
            +S++S Y
Sbjct: 1123 QSLLSGY 1129


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,614,438
Number of Sequences: 37866
Number of extensions: 2888788
Number of successful extensions: 13425
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 12912
Number of HSP's gapped (non-prelim): 767
length of query: 1358
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1243
effective length of database: 13,892,928
effective search space: 17268909504
effective search space used: 17268909504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.