Guide to the Human Genome
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Name: KIAA0141 Sequence: fasta or formatted (515aa) NCBI GI: 217330656
Description:

hypothetical protein LOC9812

Not currently referenced in the text

Other entries for this name:
alt mRNA {515aa} hypothetical protein LOC9812
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         52           3
 C cysteine            1.6          8           1
 D aspartate           3.1         16           1
 E glutamate           4.7         24           2
 F phenylalanine       3.3         17           2
 G glycine             8.7         45           2
 H histidine           3.5         18           1
 I isoleucine          1.7          9           1
 K lysine              2.9         15           1
 L leucine            12.2         63           2
 M methionine          0.8          4           1
 N asparagine          2.7         14           2
 P proline             8.0         41           2
 Q glutamine           5.8         30           2
 R arginine            7.2         37           1
 S serine             11.8         61           3
 T threonine           4.3         22           2
 V valine              3.1         16           2
 W tryptophan          1.9         10           1
 Y tyrosine            2.5         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC9812 
KIAA0141              1.000   hypothetical protein LOC9812 
SEL1L                 0.038   sel-1 suppressor of lin-12-like 
SEL1L2                0.032   sel-1 suppressor of lin-12-like 2 
LRP2BP                0.028   LRP2 binding protein 
C2orf16               0.017   hypothetical protein LOC84226 
RTL1                  0.014   retrotransposon-like 1 
ASXL1                 0.012   additional sex combs like 1 
KIAA0746              0.012   hypothetical protein LOC23231 
LOC100133690          0.012   PREDICTED: hypothetical protein 
LOC100287987          0.012   PREDICTED: hypothetical protein XP_002342433 
C4orf14               0.011   hypothetical protein LOC84273 
PRPF40B               0.010   Huntingtin interacting protein C isoform 2 
PRPF40B               0.010   Huntingtin interacting protein C isoform 1 
ISX                   0.009   intestine-specific homeobox 
IRX1                  0.008   iroquois homeobox protein 1 
RGS12                 0.008   regulator of G-protein signalling 12 isoform 2 
RGS12                 0.008   regulator of G-protein signalling 12 isoform 1 [Homo...
RGS12                 0.008   regulator of G-protein signalling 12 isoform 3 [Homo...
PCLO                  0.007   piccolo isoform 2 
PCLO                  0.007   piccolo isoform 1 
RINL                  0.007   Ras and Rab interactor-like 
CNGB1                 0.007   cyclic nucleotide gated channel beta 1 isoform b [H...
CNGB1                 0.007   cyclic nucleotide gated channel beta 1 isoform a [H...
C2orf71               0.007   hypothetical protein LOC388939 
NFKBIE                0.006   nuclear factor of kappa light polypeptide gene enhan...
CASP9                 0.006   caspase 9 isoform beta preproprotein 
LOC100129129          0.006   PREDICTED: hypothetical protein 
C9orf79               0.006   chromosome 9 open reading frame 79 
EPS8L3                0.006   epidermal growth factor receptor pathway substrate 8...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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