Guide to the Human Genome
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Name: LOC100129323 Sequence: fasta or formatted (310aa) NCBI GI: 169217000
Description:

PREDICTED: similar to pro-pol protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {310aa} PREDICTED: similar to pro-pol protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         21           1
 C cysteine            1.3          4           1
 D aspartate           5.2         16           1
 E glutamate           1.0          3           1
 F phenylalanine       5.8         18           2
 G glycine             3.9         12           1
 H histidine           4.5         14           1
 I isoleucine          4.8         15           2
 K lysine              3.9         12           2
 L leucine            14.5         45           3
 M methionine          0.6          2           1
 N asparagine          1.9          6           1
 P proline             8.4         26           1
 Q glutamine           6.5         20           2
 R arginine            2.3          7           1
 S serine             12.9         40           3
 T threonine           7.4         23           2
 V valine              4.5         14           2
 W tryptophan          1.3          4           1
 Y tyrosine            2.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to pro-pol protein 
LOC100129323          1.000   PREDICTED: similar to pro-pol protein 
RTL1                  0.032   retrotransposon-like 1 
KIAA1305              0.023   hypothetical protein LOC57523 
SORBS1                0.015   sorbin and SH3 domain containing 1 isoform 3 
SH3TC2                0.012   SH3 domain and tetratricopeptide repeats 2 
WWP2                  0.007   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP2                  0.007   WW domain containing E3 ubiquitin protein ligase 2 i...
SESTD1                0.007   SEC14 and spectrin domains 1 
MUC17                 0.007   mucin 17 
KRTCAP3               0.007   keratinocyte associated protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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