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Search of human proteins with 19924117
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
(350 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens] 680 0.0
gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens] 669 0.0
gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens] 669 0.0
gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens] 119 5e-27
gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens] 115 4e-26
gi|153946430 X-ray repair cross complementing protein 3 [Homo sa... 101 1e-21
gi|153946427 X-ray repair cross complementing protein 3 [Homo sa... 101 1e-21
gi|4885659 X-ray repair cross complementing protein 3 [Homo sapi... 101 1e-21
gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens] 100 2e-21
gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens] 97 2e-20
gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens] 86 5e-17
gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens] 58 1e-08
gi|4885657 X-ray repair cross complementing protein 2 [Homo sapi... 54 3e-07
gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens] 49 5e-06
gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens] 42 8e-04
gi|11321607 thyroid hormone receptor interactor 13 [Homo sapiens] 35 0.10
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 32 0.85
gi|239749578 PREDICTED: ankyrin repeat domain 18A [Homo sapiens] 31 1.9
gi|19718796 RAD17 homolog isoform 1 [Homo sapiens] 31 1.9
gi|19718794 RAD17 homolog isoform 1 [Homo sapiens] 31 1.9
gi|19718792 RAD17 homolog isoform 1 [Homo sapiens] 31 1.9
gi|19718790 RAD17 homolog isoform 4 [Homo sapiens] 31 1.9
gi|19718784 RAD17 homolog isoform 1 [Homo sapiens] 31 1.9
gi|4506383 RAD17 homolog isoform 1 [Homo sapiens] 31 1.9
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 31 1.9
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 31 1.9
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 31 1.9
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 31 1.9
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 31 1.9
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 31 1.9
>gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
Length = 350
Score = 680 bits (1754), Expect = 0.0
Identities = 350/350 (100%), Positives = 350/350 (100%)
Query: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM 120
APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
Sbjct: 61 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM 120
Query: 121 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 180
MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
Sbjct: 121 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 180
Query: 181 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240
RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
Sbjct: 181 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240
Query: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300
SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
Sbjct: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300
Query: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGQEKP 350
SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGQEKP
Sbjct: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGQEKP 350
>gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]
Length = 384
Score = 669 bits (1726), Expect = 0.0
Identities = 345/345 (100%), Positives = 345/345 (100%)
Query: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM 120
APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
Sbjct: 61 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM 120
Query: 121 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 180
MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
Sbjct: 121 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 180
Query: 181 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240
RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
Sbjct: 181 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240
Query: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300
SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
Sbjct: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300
Query: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQ 345
SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQ
Sbjct: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQ 345
>gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]
Length = 350
Score = 669 bits (1726), Expect = 0.0
Identities = 345/345 (100%), Positives = 345/345 (100%)
Query: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM 120
APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
Sbjct: 61 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM 120
Query: 121 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 180
MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
Sbjct: 121 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 180
Query: 181 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240
RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
Sbjct: 181 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240
Query: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300
SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
Sbjct: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300
Query: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQ 345
SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQ
Sbjct: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQ 345
>gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]
Length = 339
Score = 119 bits (297), Expect = 5e-27
Identities = 93/338 (27%), Positives = 146/338 (43%), Gaps = 30/338 (8%)
Query: 5 KLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKM 64
+L++ G++ +L T + EL+ + G+S ++L ++
Sbjct: 27 RLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGF 86
Query: 65 QTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSIL 124
TA +RS ++T LD+ L GG+ GS+TE+ G GKTQ C +++
Sbjct: 87 TTATEFHQRRSEIIQ---ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 143
Query: 125 ATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELT 184
LP + GG EG +YIDTE F ERL+ +AE RY + +L V R
Sbjct: 144 CQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE----RYGLSGSDVL---DNVAYARAFN 196
Query: 185 CDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKY 244
D Q + ++ L+I+DS ++ R ++ +G L R LAR L
Sbjct: 197 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSG--RGELSARQMHLARFLRMLLR 254
Query: 245 LAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV 304
LA+EF + V++TNQ+ + GA AD P GN +H+
Sbjct: 255 LADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG------------------GNIIAHAS 296
Query: 305 NTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
TRL L+ E R I SP P ++ I +G+
Sbjct: 297 TTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGV 334
>gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
Length = 376
Score = 115 bits (289), Expect = 4e-26
Identities = 91/340 (26%), Positives = 149/340 (43%), Gaps = 52/340 (15%)
Query: 26 TCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSA--------- 76
T ++ L + P EL K G+S E L ++ R C G
Sbjct: 34 TAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQ 93
Query: 77 DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEG 136
+ + F+ T SALD+ L GGV TEI G PG GKTQ C+ +++ +P GG+ G
Sbjct: 94 EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAG 153
Query: 137 AVVYIDTESAFSAERLVEIAESRF-------PRYFNTEEKLLLTS-------SKVHLYRE 182
V+IDTE +F +R+V++A + ++ E + L S ++ +R
Sbjct: 154 EAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRC 213
Query: 183 LTCDEVLQRIESLEEEIISKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASS 241
E+L ++ L + + ++LVI+D +A R + D +L R + L A
Sbjct: 214 RDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD-----DLSLRTRLLNGLAQQ 268
Query: 242 LKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWS 301
+ LA + VILTNQ+TT + + ++ ALG +W
Sbjct: 269 MISLANNHRLAVILTNQMTTKID----------------------RNQALLVPALGESWG 306
Query: 302 HSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEG 341
H+ RLI + D ++R + KSP + ++ IK +G
Sbjct: 307 HAATIRLIFHW-DRKQRLATLYKSPSQKECTVLFQIKPQG 345
>gi|153946430 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 101 bits (251), Expect = 1e-21
Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 42/357 (11%)
Query: 6 LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RACAPKM 64
L + L+ + + + ++ + ++ L S +L ++T LS V LL S +
Sbjct: 3 LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
Query: 65 QTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123
TA + Q+ LS LD L GG+ +TE+ G GKTQ + + +
Sbjct: 63 LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
Query: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLT----SSKVHL 179
P GGLE VYI TE AF +RL ++ + PR LL S++ +
Sbjct: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFGSQIFI 181
Query: 180 YRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNKFLARE 238
D +L+ + ++S+G+ +LV++DSVA+ R EFD+Q R + L
Sbjct: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRARHLQSL 238
Query: 239 ASSLKYLAEEFSIPVILTNQITTHLS------GALASQADLVSPADDLSLSEGTSGSSCV 292
++L+ L+ F PV+ NQ+T + G L + VSP
Sbjct: 239 GATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSP---------------- 282
Query: 293 IAALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGL 342
ALG TW++ + RL+ L E R + + +P P +S YTI EG+
Sbjct: 283 --ALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|153946427 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 101 bits (251), Expect = 1e-21
Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 42/357 (11%)
Query: 6 LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RACAPKM 64
L + L+ + + + ++ + ++ L S +L ++T LS V LL S +
Sbjct: 3 LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
Query: 65 QTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123
TA + Q+ LS LD L GG+ +TE+ G GKTQ + + +
Sbjct: 63 LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
Query: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLT----SSKVHL 179
P GGLE VYI TE AF +RL ++ + PR LL S++ +
Sbjct: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFGSQIFI 181
Query: 180 YRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNKFLARE 238
D +L+ + ++S+G+ +LV++DSVA+ R EFD+Q R + L
Sbjct: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRARHLQSL 238
Query: 239 ASSLKYLAEEFSIPVILTNQITTHLS------GALASQADLVSPADDLSLSEGTSGSSCV 292
++L+ L+ F PV+ NQ+T + G L + VSP
Sbjct: 239 GATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSP---------------- 282
Query: 293 IAALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGL 342
ALG TW++ + RL+ L E R + + +P P +S YTI EG+
Sbjct: 283 --ALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|4885659 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 101 bits (251), Expect = 1e-21
Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 42/357 (11%)
Query: 6 LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RACAPKM 64
L + L+ + + + ++ + ++ L S +L ++T LS V LL S +
Sbjct: 3 LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
Query: 65 QTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123
TA + Q+ LS LD L GG+ +TE+ G GKTQ + + +
Sbjct: 63 LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
Query: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLT----SSKVHL 179
P GGLE VYI TE AF +RL ++ + PR LL S++ +
Sbjct: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFGSQIFI 181
Query: 180 YRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNKFLARE 238
D +L+ + ++S+G+ +LV++DSVA+ R EFD+Q R + L
Sbjct: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRARHLQSL 238
Query: 239 ASSLKYLAEEFSIPVILTNQITTHLS------GALASQADLVSPADDLSLSEGTSGSSCV 292
++L+ L+ F PV+ NQ+T + G L + VSP
Sbjct: 239 GATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSP---------------- 282
Query: 293 IAALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGL 342
ALG TW++ + RL+ L E R + + +P P +S YTI EG+
Sbjct: 283 --ALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
Length = 328
Score = 100 bits (249), Expect = 2e-21
Identities = 94/356 (26%), Positives = 155/356 (43%), Gaps = 56/356 (15%)
Query: 10 GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVSRACAPKMQTA 67
GL++E+ L H+I T D + E+ + GLSY+ + L + + + P
Sbjct: 11 GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFP----V 66
Query: 68 YGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATL 127
G S A LST + +LD+ L G+ G +TEI G PG GKTQ C+ M+
Sbjct: 67 NGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA- 125
Query: 128 PTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDE 187
GL+ V+Y+D+ +A RL+++ +++ + + + L VH + +
Sbjct: 126 ----HGLQQNVLYVDSNGGLTASRLLQLLQAK-TQDEEEQAEALRRIQVVHAFDIFQMLD 180
Query: 188 VLQRIESLEEEII---SKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKY 244
VLQ + + + S +K+V++DSV +VV L G +E + + A LK
Sbjct: 181 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLALMMQLARELKT 236
Query: 245 LAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV 304
LA + + V++TN IT S + ALG +WS
Sbjct: 237 LARDLGMAVVVTNHITRDRD------------------------SGRLKPALGRSWSFVP 272
Query: 305 NTRLILQYLDSE-----RRQILIAKSPLAPFTSF-------VYTIKEEGLVLQGQE 348
+TR++L ++ RR +AKS P T F + E+ LQG +
Sbjct: 273 STRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQSATLQGDQ 327
>gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]
Length = 340
Score = 97.4 bits (241), Expect = 2e-20
Identities = 87/339 (25%), Positives = 150/339 (44%), Gaps = 32/339 (9%)
Query: 6 LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQ 65
L++ G++ +L I T + + L V GLS V ++ ++ P
Sbjct: 27 LQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPGFL 86
Query: 66 TAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILA 125
TA+ +R F ++T D+ L GG+ ++TE G GKTQ + + A
Sbjct: 87 TAFEYSEKRKMVFH---ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 143
Query: 126 TLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTC 185
LP G G +++IDTE+ F +RL +IA+ FN + +L V R T
Sbjct: 144 QLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR-----FNVDHDAVL--DNVLYARAYTS 196
Query: 186 DEVLQRIESLEEEIISKG--IKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLK 243
+ ++ ++ + + + KL+I+DS+ ++ R +F +G L ER + LA+ S L+
Sbjct: 197 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSRLQ 254
Query: 244 YLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHS 303
++EE+++ V +TNQ+T + QAD P G+ +H+
Sbjct: 255 KISEEYNVAVFVTNQMTADPGATMTFQADPKKPIG------------------GHILAHA 296
Query: 304 VNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
TR+ L+ E R I SP P + I G+
Sbjct: 297 STTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335
>gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
Length = 348
Score = 85.9 bits (211), Expect = 5e-17
Identities = 94/372 (25%), Positives = 157/372 (42%), Gaps = 68/372 (18%)
Query: 10 GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRG--VHEL--LCMVSRACAPKMQ 65
GL++E+ L H+I T D + E+ + GLSY+ H L + P +
Sbjct: 11 GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGGLQLPQVPAGR 70
Query: 66 TAYGIK-AQRSAD-------------FSPAFLSTTLSALDEALHGGVACGSLTEITGPPG 111
+ G++ A + A F + + S LD+ L G+ G +TEI G PG
Sbjct: 71 SWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTGEVTEIVGGPG 130
Query: 112 CGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLL 171
GKTQ C+ M+ GL+ V+Y+D+ +A RL+++ +++ + + + L
Sbjct: 131 SGKTQVCLCMAANVA-----HGLQQNVLYVDSNGGLTASRLLQLLQAK-TQDEEEQAEAL 184
Query: 172 LTSSKVHLYRELTCDEVLQRIESLEEEII---SKGIKLVILDSVASVVRKEFDAQLQGNL 228
VH + +VLQ + + + S +K+V++DSV +VV L G
Sbjct: 185 RRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQ 240
Query: 229 KERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSG 288
+E + + A LK LA + + V++TN IT
Sbjct: 241 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRD------------------------ 276
Query: 289 SSCVIAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSF-------VYT 336
S + ALG +WS +TR++L ++ RR +AKS P T F +
Sbjct: 277 SGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWG 335
Query: 337 IKEEGLVLQGQE 348
E+ LQG +
Sbjct: 336 TSEQSATLQGDQ 347
>gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens]
Length = 242
Score = 57.8 bits (138), Expect = 1e-08
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 24/192 (12%)
Query: 155 IAESRFPRYFNTEEKLLLTSS----KVHLYRELTCDEVLQRIESLEEEIISKGIKLVILD 210
I+E++ + E+ L+ S V R D Q + ++ L+I+D
Sbjct: 66 ISEAKADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVD 125
Query: 211 SVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQ 270
S ++ R ++ + G L R LAR L LA+EF + V++TNQ+ + GA
Sbjct: 126 SATALYRTDYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFA 183
Query: 271 ADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPF 330
AD P GN +H+ TRL L+ E R I SP P
Sbjct: 184 ADPKKPIG------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPE 225
Query: 331 TSFVYTIKEEGL 342
++ I +G+
Sbjct: 226 AEAMFAINADGV 237
>gi|4885657 X-ray repair cross complementing protein 2 [Homo
sapiens]
Length = 280
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 101 GSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRF 160
G + E GP G GKT+ ++ LP + GGLE V++IDT+ F RLV I E R
Sbjct: 41 GDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL 100
Query: 161 PRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS-KGIKLVILDSVAS 214
+ ++EE + + L + +L + SLE S + L+ILDS+++
Sbjct: 101 SQ--SSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSA 153
>gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]
Length = 135
Score = 49.3 bits (116), Expect = 5e-06
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 26 TCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSA--------- 76
T ++ L + P EL K G+S E L ++ R C G
Sbjct: 34 TAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQ 93
Query: 77 DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQ 116
+ + F+ T SALD+ L GGV TEI G PG GKTQ
Sbjct: 94 EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQ 133
>gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens]
Length = 216
Score = 42.0 bits (97), Expect = 8e-04
Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 177 VHLYRELTCDEVLQRIESLEEEII---SKGIKLVILDSVASVVRKEFDAQLQGNLKERNK 233
VH + +VLQ + + + S +K+V++DSV +VV L G +E
Sbjct: 58 VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLA 113
Query: 234 FLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVI 293
+ + A LK LA + + V++TN IT S +
Sbjct: 114 LMMQLARELKTLARDLGMAVVVTNHITRDRD------------------------SGRLK 149
Query: 294 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSF-------VYTIKEEG 341
ALG +WS +TR++L ++ RR +AKS P T F + E+
Sbjct: 150 PALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQS 208
Query: 342 LVLQGQE 348
LQG +
Sbjct: 209 ATLQGDQ 215
>gi|11321607 thyroid hormone receptor interactor 13 [Homo sapiens]
Length = 432
Score = 35.0 bits (79), Expect = 0.10
Identities = 34/193 (17%), Positives = 79/193 (40%), Gaps = 30/193 (15%)
Query: 82 FLSTTLSALDEALHGG-VACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVY 140
++ TTL D+ ++ + + + GPPG GKT C ++ T+ + G ++
Sbjct: 152 YVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIE 211
Query: 141 IDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEII 200
I++ S FS ++F+ KL+ ++ Q+I+ L ++
Sbjct: 212 INSHSLFS-------------KWFSESGKLV--------------TKMFQKIQDLIDD-- 242
Query: 201 SKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQIT 260
+ V++D V S+ + + + + + + + ++ ++ T+ IT
Sbjct: 243 KDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNIT 302
Query: 261 THLSGALASQADL 273
+ A +AD+
Sbjct: 303 EKIDVAFVDRADI 315
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 32.0 bits (71), Expect = 0.85
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 171 LLTSSKVHLYRE-LTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDA---QLQG 226
LLT SK + +E + DE L+ +L+ ++ + IK+ LDS + ++E QL+G
Sbjct: 811 LLTESKGEMKKENMKKDEALK---ALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEG 867
Query: 227 NLKERNKFLAREASSLKYLAEEFSI 251
N ++ K L +++ + L +E I
Sbjct: 868 NKEKFEKQLKKKSEEVYCLQKELKI 892
>gi|239749578 PREDICTED: ankyrin repeat domain 18A [Homo sapiens]
Length = 1002
Score = 30.8 bits (68), Expect = 1.9
Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 27/162 (16%)
Query: 168 EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
EK ++ K+ Y+ + +Q IE LEE + K + E++ QL+
Sbjct: 810 EKDMVELGKLQEYKSELDERAVQEIEKLEEIHLQK--------------QAEYEKQLEQL 855
Query: 228 LKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTS 287
K+ L ++ +LK + +FS ++TT L + A V + +S S
Sbjct: 856 NKDNTASLKKKELTLKDVECKFSKMKTAYEEVTTELEEFKEAFAGAVKANNSMSKKLMKS 915
Query: 288 GSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAP 329
+ ++T+L +++ ER + ++ P+ P
Sbjct: 916 DKKIAV----------ISTKL---FMEKERMEYFLSTLPMRP 944
>gi|19718796 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 30.8 bits (68), Expect = 1.9
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 101 GSLTEITGPPGCGKT 115
GS+ ITGPPGCGKT
Sbjct: 119 GSILLITGPPGCGKT 133
>gi|19718794 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 30.8 bits (68), Expect = 1.9
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 101 GSLTEITGPPGCGKT 115
GS+ ITGPPGCGKT
Sbjct: 119 GSILLITGPPGCGKT 133
>gi|19718792 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 30.8 bits (68), Expect = 1.9
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 101 GSLTEITGPPGCGKT 115
GS+ ITGPPGCGKT
Sbjct: 119 GSILLITGPPGCGKT 133
>gi|19718790 RAD17 homolog isoform 4 [Homo sapiens]
Length = 584
Score = 30.8 bits (68), Expect = 1.9
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 101 GSLTEITGPPGCGKT 115
GS+ ITGPPGCGKT
Sbjct: 33 GSILLITGPPGCGKT 47
>gi|19718784 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 30.8 bits (68), Expect = 1.9
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 101 GSLTEITGPPGCGKT 115
GS+ ITGPPGCGKT
Sbjct: 119 GSILLITGPPGCGKT 133
>gi|4506383 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 30.8 bits (68), Expect = 1.9
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 101 GSLTEITGPPGCGKT 115
GS+ ITGPPGCGKT
Sbjct: 119 GSILLITGPPGCGKT 133
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 168 EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
+K LL L E T E ++ +EEE+ S +++ L + + + E A + +
Sbjct: 2201 QKNLLDEELQRLKAEAT--EAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2258
Query: 228 LKERNKFLAREASSLKYLAEE 248
+FL EA +K +AEE
Sbjct: 2259 KDNTQRFLQEEAEKMKQVAEE 2279
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 168 EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
+K LL L E T E ++ +EEE+ S +++ L + + + E A + +
Sbjct: 2205 QKNLLDEELQRLKAEAT--EAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2262
Query: 228 LKERNKFLAREASSLKYLAEE 248
+FL EA +K +AEE
Sbjct: 2263 KDNTQRFLQEEAEKMKQVAEE 2283
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 168 EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
+K LL L E T E ++ +EEE+ S +++ L + + + E A + +
Sbjct: 2201 QKNLLDEELQRLKAEAT--EAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2258
Query: 228 LKERNKFLAREASSLKYLAEE 248
+FL EA +K +AEE
Sbjct: 2259 KDNTQRFLQEEAEKMKQVAEE 2279
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 168 EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
+K LL L E T E ++ +EEE+ S +++ L + + + E A + +
Sbjct: 2169 QKNLLDEELQRLKAEAT--EAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2226
Query: 228 LKERNKFLAREASSLKYLAEE 248
+FL EA +K +AEE
Sbjct: 2227 KDNTQRFLQEEAEKMKQVAEE 2247
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 168 EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
+K LL L E T E ++ +EEE+ S +++ L + + + E A + +
Sbjct: 2338 QKNLLDEELQRLKAEAT--EAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2395
Query: 228 LKERNKFLAREASSLKYLAEE 248
+FL EA +K +AEE
Sbjct: 2396 KDNTQRFLQEEAEKMKQVAEE 2416
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 168 EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
+K LL L E T E ++ +EEE+ S +++ L + + + E A + +
Sbjct: 2179 QKNLLDEELQRLKAEAT--EAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2236
Query: 228 LKERNKFLAREASSLKYLAEE 248
+FL EA +K +AEE
Sbjct: 2237 KDNTQRFLQEEAEKMKQVAEE 2257
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,144,180
Number of Sequences: 37866
Number of extensions: 498878
Number of successful extensions: 1482
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1385
Number of HSP's gapped (non-prelim): 94
length of query: 350
length of database: 18,247,518
effective HSP length: 103
effective length of query: 247
effective length of database: 14,347,320
effective search space: 3543788040
effective search space used: 3543788040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.