Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 19924117

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
         (350 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]                     680   0.0  
gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]                     669   0.0  
gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]                     669   0.0  
gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]            119   5e-27
gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]                  115   4e-26
gi|153946430 X-ray repair cross complementing protein 3 [Homo sa...   101   1e-21
gi|153946427 X-ray repair cross complementing protein 3 [Homo sa...   101   1e-21
gi|4885659 X-ray repair cross complementing protein 3 [Homo sapi...   101   1e-21
gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]                    100   2e-21
gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]      97   2e-20
gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]                     86   5e-17
gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens]            58   1e-08
gi|4885657 X-ray repair cross complementing protein 2 [Homo sapi...    54   3e-07
gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]                    49   5e-06
gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens]                      42   8e-04
gi|11321607 thyroid hormone receptor interactor 13 [Homo sapiens]      35   0.10 
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]                   32   0.85 
gi|239749578 PREDICTED: ankyrin repeat domain 18A [Homo sapiens]       31   1.9  
gi|19718796 RAD17 homolog isoform 1 [Homo sapiens]                     31   1.9  
gi|19718794 RAD17 homolog isoform 1 [Homo sapiens]                     31   1.9  
gi|19718792 RAD17 homolog isoform 1 [Homo sapiens]                     31   1.9  
gi|19718790 RAD17 homolog isoform 4 [Homo sapiens]                     31   1.9  
gi|19718784 RAD17 homolog isoform 1 [Homo sapiens]                     31   1.9  
gi|4506383 RAD17 homolog isoform 1 [Homo sapiens]                      31   1.9  
gi|41322923 plectin 1 isoform 11 [Homo sapiens]                        31   1.9  
gi|41322914 plectin 1 isoform 10 [Homo sapiens]                        31   1.9  
gi|41322919 plectin 1 isoform 8 [Homo sapiens]                         31   1.9  
gi|41322910 plectin 1 isoform 7 [Homo sapiens]                         31   1.9  
gi|41322916 plectin 1 isoform 6 [Homo sapiens]                         31   1.9  
gi|41322908 plectin 1 isoform 3 [Homo sapiens]                         31   1.9  

>gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
          Length = 350

 Score =  680 bits (1754), Expect = 0.0
 Identities = 350/350 (100%), Positives = 350/350 (100%)

Query: 1   MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
           MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
Sbjct: 1   MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60

Query: 61  APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM 120
           APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
Sbjct: 61  APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM 120

Query: 121 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 180
           MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
Sbjct: 121 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 180

Query: 181 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240
           RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
Sbjct: 181 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240

Query: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300
           SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
Sbjct: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300

Query: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGQEKP 350
           SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGQEKP
Sbjct: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGQEKP 350


>gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]
          Length = 384

 Score =  669 bits (1726), Expect = 0.0
 Identities = 345/345 (100%), Positives = 345/345 (100%)

Query: 1   MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
           MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
Sbjct: 1   MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60

Query: 61  APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM 120
           APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
Sbjct: 61  APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM 120

Query: 121 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 180
           MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
Sbjct: 121 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 180

Query: 181 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240
           RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
Sbjct: 181 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240

Query: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300
           SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
Sbjct: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300

Query: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQ 345
           SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQ
Sbjct: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQ 345


>gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]
          Length = 350

 Score =  669 bits (1726), Expect = 0.0
 Identities = 345/345 (100%), Positives = 345/345 (100%)

Query: 1   MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
           MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
Sbjct: 1   MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60

Query: 61  APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM 120
           APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
Sbjct: 61  APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM 120

Query: 121 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 180
           MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
Sbjct: 121 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 180

Query: 181 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240
           RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
Sbjct: 181 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240

Query: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300
           SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
Sbjct: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300

Query: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQ 345
           SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQ
Sbjct: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQ 345


>gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]
          Length = 339

 Score =  119 bits (297), Expect = 5e-27
 Identities = 93/338 (27%), Positives = 146/338 (43%), Gaps = 30/338 (8%)

Query: 5   KLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKM 64
           +L++ G++     +L      T +        EL+ + G+S     ++L   ++      
Sbjct: 27  RLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGF 86

Query: 65  QTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSIL 124
            TA     +RS       ++T    LD+ L GG+  GS+TE+ G    GKTQ C  +++ 
Sbjct: 87  TTATEFHQRRSEIIQ---ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 143

Query: 125 ATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELT 184
             LP + GG EG  +YIDTE  F  ERL+ +AE    RY  +   +L     V   R   
Sbjct: 144 CQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE----RYGLSGSDVL---DNVAYARAFN 196

Query: 185 CDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKY 244
            D   Q +      ++     L+I+DS  ++ R ++    +G L  R   LAR    L  
Sbjct: 197 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSG--RGELSARQMHLARFLRMLLR 254

Query: 245 LAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV 304
           LA+EF + V++TNQ+   + GA    AD   P                    GN  +H+ 
Sbjct: 255 LADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG------------------GNIIAHAS 296

Query: 305 NTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
            TRL L+    E R   I  SP  P    ++ I  +G+
Sbjct: 297 TTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGV 334


>gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
          Length = 376

 Score =  115 bits (289), Expect = 4e-26
 Identities = 91/340 (26%), Positives = 149/340 (43%), Gaps = 52/340 (15%)

Query: 26  TCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSA--------- 76
           T ++ L + P EL K  G+S     E L ++ R C        G                
Sbjct: 34  TAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQ 93

Query: 77  DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEG 136
           + +  F+ T  SALD+ L GGV     TEI G PG GKTQ C+ +++   +P   GG+ G
Sbjct: 94  EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAG 153

Query: 137 AVVYIDTESAFSAERLVEIAESRF-------PRYFNTEEKLLLTS-------SKVHLYRE 182
             V+IDTE +F  +R+V++A +          ++   E +  L         S ++ +R 
Sbjct: 154 EAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRC 213

Query: 183 LTCDEVLQRIESLEEEIISKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASS 241
               E+L ++  L + +     ++LVI+D +A   R + D     +L  R + L   A  
Sbjct: 214 RDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD-----DLSLRTRLLNGLAQQ 268

Query: 242 LKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWS 301
           +  LA    + VILTNQ+TT +                          + ++ ALG +W 
Sbjct: 269 MISLANNHRLAVILTNQMTTKID----------------------RNQALLVPALGESWG 306

Query: 302 HSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEG 341
           H+   RLI  + D ++R   + KSP     + ++ IK +G
Sbjct: 307 HAATIRLIFHW-DRKQRLATLYKSPSQKECTVLFQIKPQG 345


>gi|153946430 X-ray repair cross complementing protein 3 [Homo
           sapiens]
          Length = 346

 Score =  101 bits (251), Expect = 1e-21
 Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 42/357 (11%)

Query: 6   LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RACAPKM 64
           L  + L+  +   + + ++ + ++ L  S  +L ++T LS   V  LL   S       +
Sbjct: 3   LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62

Query: 65  QTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123
            TA  +  Q+         LS     LD  L GG+    +TE+ G    GKTQ  + + +
Sbjct: 63  LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122

Query: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLT----SSKVHL 179
               P   GGLE   VYI TE AF  +RL ++   + PR        LL      S++ +
Sbjct: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFGSQIFI 181

Query: 180 YRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNKFLARE 238
                 D +L+ +      ++S+G+ +LV++DSVA+  R EFD+Q       R + L   
Sbjct: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRARHLQSL 238

Query: 239 ASSLKYLAEEFSIPVILTNQITTHLS------GALASQADLVSPADDLSLSEGTSGSSCV 292
            ++L+ L+  F  PV+  NQ+T  +       G L    + VSP                
Sbjct: 239 GATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSP---------------- 282

Query: 293 IAALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGL 342
             ALG TW++ +  RL+   L  E        R + +  +P  P +S  YTI  EG+
Sbjct: 283 --ALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337


>gi|153946427 X-ray repair cross complementing protein 3 [Homo
           sapiens]
          Length = 346

 Score =  101 bits (251), Expect = 1e-21
 Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 42/357 (11%)

Query: 6   LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RACAPKM 64
           L  + L+  +   + + ++ + ++ L  S  +L ++T LS   V  LL   S       +
Sbjct: 3   LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62

Query: 65  QTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123
            TA  +  Q+         LS     LD  L GG+    +TE+ G    GKTQ  + + +
Sbjct: 63  LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122

Query: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLT----SSKVHL 179
               P   GGLE   VYI TE AF  +RL ++   + PR        LL      S++ +
Sbjct: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFGSQIFI 181

Query: 180 YRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNKFLARE 238
                 D +L+ +      ++S+G+ +LV++DSVA+  R EFD+Q       R + L   
Sbjct: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRARHLQSL 238

Query: 239 ASSLKYLAEEFSIPVILTNQITTHLS------GALASQADLVSPADDLSLSEGTSGSSCV 292
            ++L+ L+  F  PV+  NQ+T  +       G L    + VSP                
Sbjct: 239 GATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSP---------------- 282

Query: 293 IAALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGL 342
             ALG TW++ +  RL+   L  E        R + +  +P  P +S  YTI  EG+
Sbjct: 283 --ALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337


>gi|4885659 X-ray repair cross complementing protein 3 [Homo
           sapiens]
          Length = 346

 Score =  101 bits (251), Expect = 1e-21
 Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 42/357 (11%)

Query: 6   LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RACAPKM 64
           L  + L+  +   + + ++ + ++ L  S  +L ++T LS   V  LL   S       +
Sbjct: 3   LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62

Query: 65  QTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123
            TA  +  Q+         LS     LD  L GG+    +TE+ G    GKTQ  + + +
Sbjct: 63  LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122

Query: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLT----SSKVHL 179
               P   GGLE   VYI TE AF  +RL ++   + PR        LL      S++ +
Sbjct: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFGSQIFI 181

Query: 180 YRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNKFLARE 238
                 D +L+ +      ++S+G+ +LV++DSVA+  R EFD+Q       R + L   
Sbjct: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRARHLQSL 238

Query: 239 ASSLKYLAEEFSIPVILTNQITTHLS------GALASQADLVSPADDLSLSEGTSGSSCV 292
            ++L+ L+  F  PV+  NQ+T  +       G L    + VSP                
Sbjct: 239 GATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSP---------------- 282

Query: 293 IAALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGL 342
             ALG TW++ +  RL+   L  E        R + +  +P  P +S  YTI  EG+
Sbjct: 283 --ALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337


>gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
          Length = 328

 Score =  100 bits (249), Expect = 2e-21
 Identities = 94/356 (26%), Positives = 155/356 (43%), Gaps = 56/356 (15%)

Query: 10  GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVSRACAPKMQTA 67
           GL++E+   L  H+I T  D +     E+ +  GLSY+ +  L  + +   +  P     
Sbjct: 11  GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFP----V 66

Query: 68  YGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATL 127
            G         S A LST + +LD+ L  G+  G +TEI G PG GKTQ C+ M+     
Sbjct: 67  NGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA- 125

Query: 128 PTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDE 187
                GL+  V+Y+D+    +A RL+++ +++  +    + + L     VH +      +
Sbjct: 126 ----HGLQQNVLYVDSNGGLTASRLLQLLQAK-TQDEEEQAEALRRIQVVHAFDIFQMLD 180

Query: 188 VLQRIESLEEEII---SKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKY 244
           VLQ +     + +   S  +K+V++DSV +VV       L G  +E    + + A  LK 
Sbjct: 181 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLALMMQLARELKT 236

Query: 245 LAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV 304
           LA +  + V++TN IT                            S  +  ALG +WS   
Sbjct: 237 LARDLGMAVVVTNHITRDRD------------------------SGRLKPALGRSWSFVP 272

Query: 305 NTRLILQYLDSE-----RRQILIAKSPLAPFTSF-------VYTIKEEGLVLQGQE 348
           +TR++L  ++       RR   +AKS   P T F        +   E+   LQG +
Sbjct: 273 STRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQSATLQGDQ 327


>gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]
          Length = 340

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 87/339 (25%), Positives = 150/339 (44%), Gaps = 32/339 (9%)

Query: 6   LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQ 65
           L++ G++     +L    I T +     +   L  V GLS   V ++    ++   P   
Sbjct: 27  LQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPGFL 86

Query: 66  TAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILA 125
           TA+    +R   F    ++T     D+ L GG+   ++TE  G    GKTQ    + + A
Sbjct: 87  TAFEYSEKRKMVFH---ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 143

Query: 126 TLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTC 185
            LP   G   G +++IDTE+ F  +RL +IA+      FN +   +L    V   R  T 
Sbjct: 144 QLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR-----FNVDHDAVL--DNVLYARAYTS 196

Query: 186 DEVLQRIESLEEEIISKG--IKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLK 243
           +  ++ ++ +  +   +    KL+I+DS+ ++ R +F    +G L ER + LA+  S L+
Sbjct: 197 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSRLQ 254

Query: 244 YLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHS 303
            ++EE+++ V +TNQ+T      +  QAD   P                    G+  +H+
Sbjct: 255 KISEEYNVAVFVTNQMTADPGATMTFQADPKKPIG------------------GHILAHA 296

Query: 304 VNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
             TR+ L+    E R   I  SP  P     + I   G+
Sbjct: 297 STTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335


>gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
          Length = 348

 Score = 85.9 bits (211), Expect = 5e-17
 Identities = 94/372 (25%), Positives = 157/372 (42%), Gaps = 68/372 (18%)

Query: 10  GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRG--VHEL--LCMVSRACAPKMQ 65
           GL++E+   L  H+I T  D +     E+ +  GLSY+    H    L  +     P  +
Sbjct: 11  GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGGLQLPQVPAGR 70

Query: 66  TAYGIK-AQRSAD-------------FSPAFLSTTLSALDEALHGGVACGSLTEITGPPG 111
           +  G++ A + A              F     + + S LD+ L  G+  G +TEI G PG
Sbjct: 71  SWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTGEVTEIVGGPG 130

Query: 112 CGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLL 171
            GKTQ C+ M+          GL+  V+Y+D+    +A RL+++ +++  +    + + L
Sbjct: 131 SGKTQVCLCMAANVA-----HGLQQNVLYVDSNGGLTASRLLQLLQAK-TQDEEEQAEAL 184

Query: 172 LTSSKVHLYRELTCDEVLQRIESLEEEII---SKGIKLVILDSVASVVRKEFDAQLQGNL 228
                VH +      +VLQ +     + +   S  +K+V++DSV +VV       L G  
Sbjct: 185 RRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQ 240

Query: 229 KERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSG 288
           +E    + + A  LK LA +  + V++TN IT                            
Sbjct: 241 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRD------------------------ 276

Query: 289 SSCVIAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSF-------VYT 336
           S  +  ALG +WS   +TR++L  ++       RR   +AKS   P T F        + 
Sbjct: 277 SGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWG 335

Query: 337 IKEEGLVLQGQE 348
             E+   LQG +
Sbjct: 336 TSEQSATLQGDQ 347


>gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens]
          Length = 242

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 24/192 (12%)

Query: 155 IAESRFPRYFNTEEKLLLTSS----KVHLYRELTCDEVLQRIESLEEEIISKGIKLVILD 210
           I+E++  +     E+  L+ S     V   R    D   Q +      ++     L+I+D
Sbjct: 66  ISEAKADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVD 125

Query: 211 SVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQ 270
           S  ++ R ++  +  G L  R   LAR    L  LA+EF + V++TNQ+   + GA    
Sbjct: 126 SATALYRTDYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFA 183

Query: 271 ADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPF 330
           AD   P                    GN  +H+  TRL L+    E R   I  SP  P 
Sbjct: 184 ADPKKPIG------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPE 225

Query: 331 TSFVYTIKEEGL 342
              ++ I  +G+
Sbjct: 226 AEAMFAINADGV 237


>gi|4885657 X-ray repair cross complementing protein 2 [Homo
           sapiens]
          Length = 280

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 101 GSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRF 160
           G + E  GP G GKT+    ++    LP + GGLE  V++IDT+  F   RLV I E R 
Sbjct: 41  GDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL 100

Query: 161 PRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS-KGIKLVILDSVAS 214
            +  ++EE +     +  L    +   +L  + SLE    S   + L+ILDS+++
Sbjct: 101 SQ--SSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSA 153


>gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]
          Length = 135

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 26  TCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSA--------- 76
           T ++ L + P EL K  G+S     E L ++ R C        G                
Sbjct: 34  TAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQ 93

Query: 77  DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQ 116
           + +  F+ T  SALD+ L GGV     TEI G PG GKTQ
Sbjct: 94  EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQ 133


>gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens]
          Length = 216

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 44/187 (23%)

Query: 177 VHLYRELTCDEVLQRIESLEEEII---SKGIKLVILDSVASVVRKEFDAQLQGNLKERNK 233
           VH +      +VLQ +     + +   S  +K+V++DSV +VV       L G  +E   
Sbjct: 58  VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLA 113

Query: 234 FLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVI 293
            + + A  LK LA +  + V++TN IT                            S  + 
Sbjct: 114 LMMQLARELKTLARDLGMAVVVTNHITRDRD------------------------SGRLK 149

Query: 294 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSF-------VYTIKEEG 341
            ALG +WS   +TR++L  ++       RR   +AKS   P T F        +   E+ 
Sbjct: 150 PALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQS 208

Query: 342 LVLQGQE 348
             LQG +
Sbjct: 209 ATLQGDQ 215


>gi|11321607 thyroid hormone receptor interactor 13 [Homo sapiens]
          Length = 432

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 34/193 (17%), Positives = 79/193 (40%), Gaps = 30/193 (15%)

Query: 82  FLSTTLSALDEALHGG-VACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVY 140
           ++ TTL   D+ ++   +    +  + GPPG GKT  C  ++   T+  +     G ++ 
Sbjct: 152 YVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIE 211

Query: 141 IDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEII 200
           I++ S FS             ++F+   KL+               ++ Q+I+ L ++  
Sbjct: 212 INSHSLFS-------------KWFSESGKLV--------------TKMFQKIQDLIDD-- 242

Query: 201 SKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQIT 260
              +  V++D V S+       +      +  + +    + +  +    ++ ++ T+ IT
Sbjct: 243 KDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNIT 302

Query: 261 THLSGALASQADL 273
             +  A   +AD+
Sbjct: 303 EKIDVAFVDRADI 315


>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
          Length = 1417

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 171 LLTSSKVHLYRE-LTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDA---QLQG 226
           LLT SK  + +E +  DE L+   +L+ ++  + IK+  LDS   + ++E      QL+G
Sbjct: 811 LLTESKGEMKKENMKKDEALK---ALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEG 867

Query: 227 NLKERNKFLAREASSLKYLAEEFSI 251
           N ++  K L +++  +  L +E  I
Sbjct: 868 NKEKFEKQLKKKSEEVYCLQKELKI 892


>gi|239749578 PREDICTED: ankyrin repeat domain 18A [Homo sapiens]
          Length = 1002

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 27/162 (16%)

Query: 168 EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
           EK ++   K+  Y+    +  +Q IE LEE  + K              + E++ QL+  
Sbjct: 810 EKDMVELGKLQEYKSELDERAVQEIEKLEEIHLQK--------------QAEYEKQLEQL 855

Query: 228 LKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTS 287
            K+    L ++  +LK +  +FS       ++TT L     + A  V   + +S     S
Sbjct: 856 NKDNTASLKKKELTLKDVECKFSKMKTAYEEVTTELEEFKEAFAGAVKANNSMSKKLMKS 915

Query: 288 GSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAP 329
                +          ++T+L   +++ ER +  ++  P+ P
Sbjct: 916 DKKIAV----------ISTKL---FMEKERMEYFLSTLPMRP 944


>gi|19718796 RAD17 homolog isoform 1 [Homo sapiens]
          Length = 670

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 12/15 (80%), Positives = 13/15 (86%)

Query: 101 GSLTEITGPPGCGKT 115
           GS+  ITGPPGCGKT
Sbjct: 119 GSILLITGPPGCGKT 133


>gi|19718794 RAD17 homolog isoform 1 [Homo sapiens]
          Length = 670

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 12/15 (80%), Positives = 13/15 (86%)

Query: 101 GSLTEITGPPGCGKT 115
           GS+  ITGPPGCGKT
Sbjct: 119 GSILLITGPPGCGKT 133


>gi|19718792 RAD17 homolog isoform 1 [Homo sapiens]
          Length = 670

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 12/15 (80%), Positives = 13/15 (86%)

Query: 101 GSLTEITGPPGCGKT 115
           GS+  ITGPPGCGKT
Sbjct: 119 GSILLITGPPGCGKT 133


>gi|19718790 RAD17 homolog isoform 4 [Homo sapiens]
          Length = 584

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 12/15 (80%), Positives = 13/15 (86%)

Query: 101 GSLTEITGPPGCGKT 115
           GS+  ITGPPGCGKT
Sbjct: 33  GSILLITGPPGCGKT 47


>gi|19718784 RAD17 homolog isoform 1 [Homo sapiens]
          Length = 670

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 12/15 (80%), Positives = 13/15 (86%)

Query: 101 GSLTEITGPPGCGKT 115
           GS+  ITGPPGCGKT
Sbjct: 119 GSILLITGPPGCGKT 133


>gi|4506383 RAD17 homolog isoform 1 [Homo sapiens]
          Length = 670

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 12/15 (80%), Positives = 13/15 (86%)

Query: 101 GSLTEITGPPGCGKT 115
           GS+  ITGPPGCGKT
Sbjct: 119 GSILLITGPPGCGKT 133


>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
          Length = 4547

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 168  EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
            +K LL      L  E T  E  ++   +EEE+ S  +++  L  + + +  E  A +  +
Sbjct: 2201 QKNLLDEELQRLKAEAT--EAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2258

Query: 228  LKERNKFLAREASSLKYLAEE 248
                 +FL  EA  +K +AEE
Sbjct: 2259 KDNTQRFLQEEAEKMKQVAEE 2279


>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
          Length = 4551

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 168  EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
            +K LL      L  E T  E  ++   +EEE+ S  +++  L  + + +  E  A +  +
Sbjct: 2205 QKNLLDEELQRLKAEAT--EAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2262

Query: 228  LKERNKFLAREASSLKYLAEE 248
                 +FL  EA  +K +AEE
Sbjct: 2263 KDNTQRFLQEEAEKMKQVAEE 2283


>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
          Length = 4547

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 168  EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
            +K LL      L  E T  E  ++   +EEE+ S  +++  L  + + +  E  A +  +
Sbjct: 2201 QKNLLDEELQRLKAEAT--EAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2258

Query: 228  LKERNKFLAREASSLKYLAEE 248
                 +FL  EA  +K +AEE
Sbjct: 2259 KDNTQRFLQEEAEKMKQVAEE 2279


>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
          Length = 4515

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 168  EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
            +K LL      L  E T  E  ++   +EEE+ S  +++  L  + + +  E  A +  +
Sbjct: 2169 QKNLLDEELQRLKAEAT--EAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2226

Query: 228  LKERNKFLAREASSLKYLAEE 248
                 +FL  EA  +K +AEE
Sbjct: 2227 KDNTQRFLQEEAEKMKQVAEE 2247


>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
          Length = 4684

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 168  EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
            +K LL      L  E T  E  ++   +EEE+ S  +++  L  + + +  E  A +  +
Sbjct: 2338 QKNLLDEELQRLKAEAT--EAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2395

Query: 228  LKERNKFLAREASSLKYLAEE 248
                 +FL  EA  +K +AEE
Sbjct: 2396 KDNTQRFLQEEAEKMKQVAEE 2416


>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
          Length = 4525

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 168  EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGN 227
            +K LL      L  E T  E  ++   +EEE+ S  +++  L  + + +  E  A +  +
Sbjct: 2179 QKNLLDEELQRLKAEAT--EAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2236

Query: 228  LKERNKFLAREASSLKYLAEE 248
                 +FL  EA  +K +AEE
Sbjct: 2237 KDNTQRFLQEEAEKMKQVAEE 2257


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,144,180
Number of Sequences: 37866
Number of extensions: 498878
Number of successful extensions: 1482
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1385
Number of HSP's gapped (non-prelim): 94
length of query: 350
length of database: 18,247,518
effective HSP length: 103
effective length of query: 247
effective length of database: 14,347,320
effective search space: 3543788040
effective search space used: 3543788040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press