Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RAD51C Sequence: fasta or formatted (376aa) NCBI GI: 17402896
Description:

RAD51 homolog C isoform 1

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [135aa] RAD51 homolog C isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         27           2
 C cysteine            2.7         10           1
 D aspartate           5.1         19           2
 E glutamate           7.7         29           3
 F phenylalanine       4.5         17           1
 G glycine             5.9         22           3
 H histidine           2.9         11           1
 I isoleucine          5.6         21           2
 K lysine              5.3         20           2
 L leucine            12.8         48           2
 M methionine          1.9          7           1
 N asparagine          1.9          7           2
 P proline             3.5         13           1
 Q glutamine           5.3         20           2
 R arginine            6.4         24           2
 S serine              6.1         23           1
 T threonine           6.9         26           2
 V valine              6.4         24           2
 W tryptophan          0.5          2           1
 Y tyrosine            1.6          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD51 homolog C isoform 1 
RAD51C                0.333   RAD51 homolog C isoform 2 
RAD51L1               0.128   RAD51-like 1 isoform 3 
RAD51L1               0.125   RAD51-like 1 isoform 2 
RAD51L1               0.125   RAD51-like 1 isoform 1 
RAD51                 0.105   RAD51 homolog protein isoform 1 
DMC1                  0.096   DMC1 dosage suppressor of mck1 homolog 
XRCC3                 0.093   X-ray repair cross complementing protein 3 
XRCC3                 0.093   X-ray repair cross complementing protein 3 
XRCC3                 0.093   X-ray repair cross complementing protein 3 
RAD51L3               0.067   RAD51-like 3 isoform 1 
RAD51L3               0.064   RAD51-like 3 isoform 6 
XRCC2                 0.037   X-ray repair cross complementing protein 2 
RAD51                 0.035   RAD51 homolog protein isoform 2 
RAD51L3               0.021   RAD51-like 3 isoform 4 
TTC22                 0.008   tetratricopeptide repeat domain 22 isoform 1 
SPG7                  0.007   spastic paraplegia 7 isoform 2 
SPG7                  0.007   spastic paraplegia 7 isoform 1 
POLI                  0.007   DNA polymerase iota 
AFG3L2                0.007   AFG3 ATPase family gene 3-like 2 
ZZEF1                 0.006   zinc finger, ZZ type with EF hand domain 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press