Guide to the Human Genome
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Name: RAD51L1 Sequence: fasta or formatted (350aa) NCBI GI: 19924117
Description:

RAD51-like 1 isoform 2

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [350aa] RAD51-like 1 isoform 1
alt prot [384aa] RAD51-like 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         27           2
 C cysteine            2.9         10           1
 D aspartate           3.4         12           2
 E glutamate           8.0         28           3
 F phenylalanine       3.4         12           1
 G glycine             6.3         22           2
 H histidine           1.7          6           1
 I isoleucine          5.7         20           2
 K lysine              5.1         18           2
 L leucine            14.0         49           3
 M methionine          2.0          7           2
 N asparagine          2.0          7           1
 P proline             3.4         12           2
 Q glutamine           4.3         15           1
 R arginine            4.9         17           2
 S serine             10.6         37           2
 T threonine           6.3         22           2
 V valine              5.7         20           2
 W tryptophan          0.3          1           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD51-like 1 isoform 2 
RAD51L1               0.983   RAD51-like 1 isoform 3 
RAD51L1               0.983   RAD51-like 1 isoform 1 
RAD51                 0.144   RAD51 homolog protein isoform 1 
RAD51C                0.137   RAD51 homolog C isoform 1 
XRCC3                 0.116   X-ray repair cross complementing protein 3 
XRCC3                 0.116   X-ray repair cross complementing protein 3 
XRCC3                 0.116   X-ray repair cross complementing protein 3 
RAD51L3               0.115   RAD51-like 3 isoform 1 
DMC1                  0.110   DMC1 dosage suppressor of mck1 homolog 
RAD51L3               0.093   RAD51-like 3 isoform 6 
RAD51                 0.050   RAD51 homolog protein isoform 2 
XRCC2                 0.044   X-ray repair cross complementing protein 2 
RAD51C                0.037   RAD51 homolog C isoform 2 
RAD51L3               0.026   RAD51-like 3 isoform 4 
TRIP13                0.015   thyroid hormone receptor interactor 13 
CCDC18                0.011   sarcoma antigen NY-SAR-41 
ANKRD18A              0.009   PREDICTED: ankyrin repeat domain 18A 
RAD17                 0.009   RAD17 homolog isoform 1 
RAD17                 0.009   RAD17 homolog isoform 1 
RAD17                 0.009   RAD17 homolog isoform 1 
RAD17                 0.009   RAD17 homolog isoform 4 
RAD17                 0.009   RAD17 homolog isoform 1 
RAD17                 0.009   RAD17 homolog isoform 1 
PLEC1                 0.009   plectin 1 isoform 11 
PLEC1                 0.009   plectin 1 isoform 10 
PLEC1                 0.009   plectin 1 isoform 8 
PLEC1                 0.009   plectin 1 isoform 7 
PLEC1                 0.009   plectin 1 isoform 6 
PLEC1                 0.009   plectin 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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