Guide to the Human Genome
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Name: RAD51C Sequence: fasta or formatted (135aa) NCBI GI: 4506391
Description:

RAD51 homolog C isoform 2

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [376aa] RAD51 homolog C isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7          9           1
 C cysteine            3.0          4           1
 D aspartate           2.2          3           2
 E glutamate          10.4         14           2
 F phenylalanine       4.4          6           1
 G glycine             8.1         11           3
 H histidine           1.5          2           1
 I isoleucine          5.2          7           2
 K lysine              7.4         10           2
 L leucine            11.9         16           2
 M methionine          2.2          3           1
 N asparagine          0.7          1           1
 P proline             4.4          6           1
 Q glutamine           4.4          6           1
 R arginine            5.2          7           2
 S serine              6.7          9           1
 T threonine           8.1         11           2
 V valine              5.9          8           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD51 homolog C isoform 2 
RAD51C                0.980   RAD51 homolog C isoform 1 
RAD51L1               0.098   RAD51-like 1 isoform 3 
RAD51L1               0.098   RAD51-like 1 isoform 2 
RAD51L1               0.098   RAD51-like 1 isoform 1 
XRCC3                 0.069   X-ray repair cross complementing protein 3 
XRCC3                 0.069   X-ray repair cross complementing protein 3 
XRCC3                 0.069   X-ray repair cross complementing protein 3 
RAD51                 0.041   RAD51 homolog protein isoform 1 
DMC1                  0.037   DMC1 dosage suppressor of mck1 homolog 
RAD51L3               0.033   RAD51-like 3 isoform 1 
RAD51L3               0.029   RAD51-like 3 isoform 6 
TTC22                 0.024   tetratricopeptide repeat domain 22 isoform 1 
POLI                  0.020   DNA polymerase iota 
MTRR                  0.012   methionine synthase reductase isoform 1 
MTRR                  0.012   methionine synthase reductase isoform 2 
MBD4                  0.012   methyl-CpG binding domain protein 4 
CHTF18                0.008   CTF18, chromosome transmission fidelity factor 18 ho...
RAD51                 0.008   RAD51 homolog protein isoform 2 
C11orf63              0.008   hypothetical protein LOC79864 isoform 1 
THSD7B                0.004   thrombospondin, type I, domain containing 7B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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